Os05g0503000
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Secretory carrier membrane protein.
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Os05g0503000 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Secretory carrier membrane protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 63.98 | 0.376 | 11.3 | -2.23 | 0.101 | 1.38 | 0.932 | -4.6 | -0.62 | 3.28 | 25.09 | 1145 | -- | -- |
| 70.83 | 0.392 | 11.2 | -1.12 | 0.169 | 0.841 | 0.536 | -- | -0.342 | 2.2 | 25.87 | 1170 | -- | -- |
| 65.79 | 0.378 | 11.3 | -2.2 | 0.139 | 1.28 | -- | -4.26 | -0.591 | 23.7 | 25.85 | 1244 | -- | -- |
| 71.35 | 0.393 | 11.2 | -1.14 | 0.165 | 0.836 | -- | -- | -0.311 | 0.187 | 26 | 1221 | -- | -- |
| 67.01 | 0.381 | 11.3 | -2.18 | -- | 1.37 | -- | -4.32 | -0.563 | -- | 25.64 | 1176 | -- | -- |
| 97.81 | 0.464 | 11.2 | -0.863 | 0.322 | -- | 0.609 | -- | -0.256 | 1.31 | -- | -- | -- | -- |
| 99.16 | 0.466 | 11.2 | -0.883 | 0.323 | -- | -- | -- | -0.258 | 0.635 | -- | -- | -- | -- |
| 72.74 | 0.397 | 11.2 | -1.15 | -- | 0.946 | -- | -- | -0.329 | -- | 25.53 | 1151 | -- | -- |
| 103.06 | 0.473 | 11.1 | -- | 0.208 | 0.606 | -- | -- | -0.109 | 0.103 | 28.01 | 1199 | -- | -- |
| 105.69 | 0.48 | 11.2 | -0.872 | -- | -- | -- | -- | -0.252 | -- | -- | -- | -- | -- |
| 119.72 | 0.512 | 11.1 | -- | 0.309 | -- | -- | -- | -0.16 | 0.498 | -- | -- | -- | -- |
| 105.4 | 0.478 | 11.1 | -- | -- | 0.682 | -- | -- | -0.119 | -- | 27.4 | 1153 | -- | -- |
| 125.74 | 0.523 | 11.1 | -- | -- | -- | -- | -- | -0.156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 62.82 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 11 |
| 3 | 62.96 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 9 |
| 6 | 63.16 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 5 |
| 8 | 63.20 | radiation | 30 | 14400 | < th | dose independent | rect. | 16 | 7 |
| 16 | 65.85 | radiation | 10 | 14400 | > th | dose independent | rect. | 5 | 1 |
| 28 | 65.88 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 6 |
| 29 | 65.94 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 4 |
| 30 | 65.99 | wind | 5 | 43200 | > th | dose dependent | rect. | 10 | 19 |
| 32 | 66.04 | temperature | 25 | 1440 | > th | dose dependent | rect. | 15 | 2 |
| 35 | 66.11 | wind | 7 | 43200 | < th | dose independent | rect. | 8 | 21 |
| 41 | 66.15 | wind | 3 | 43200 | > th | dose dependent | rect. | 10 | 4 |
| 45 | 66.16 | radiation | 40 | 14400 | > th | dose dependent | rect. | 15 | 18 |
| 48 | 66.18 | wind | 7 | 43200 | > th | dose independent | rect. | 8 | 21 |
| 55 | 66.21 | wind | 7 | 43200 | < th | dose independent | rect. | 19 | 23 |
| 57 | 66.22 | wind | 5 | 43200 | < th | dose independent | rect. | 3 | 13 |
| 61 | 66.22 | wind | 7 | 43200 | < th | dose independent | rect. | 15 | 23 |
| 66 | 66.23 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 21 |
| 68 | 66.23 | wind | 7 | 43200 | < th | dose independent | rect. | 1 | 22 |
| 69 | 66.23 | wind | 7 | 43200 | < th | dose independent | rect. | 21 | 23 |
| 70 | 66.24 | wind | 5 | 43200 | > th | dose independent | rect. | 3 | 13 |
| 83 | 66.26 | wind | 7 | 43200 | < th | dose independent | rect. | 17 | 23 |
| 96 | 66.29 | wind | 7 | 43200 | < th | dose independent | rect. | 3 | 23 |
| 103 | 66.30 | wind | 7 | 43200 | > th | dose independent | rect. | 19 | 23 |
| 107 | 66.31 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 21 |
| 109 | 66.31 | wind | 7 | 43200 | > th | dose independent | rect. | 1 | 22 |
| 111 | 66.31 | wind | 7 | 43200 | > th | dose independent | rect. | 15 | 23 |
| 112 | 66.31 | wind | 7 | 43200 | > th | dose independent | rect. | 21 | 23 |
| 117 | 66.32 | wind | 7 | 43200 | < th | dose independent | no | NA | NA |
| 123 | 66.32 | wind | 7 | 43200 | > th | dose independent | rect. | 17 | 23 |
| 138 | 66.34 | wind | 5 | 43200 | > th | dose dependent | rect. | 9 | 14 |
| 151 | 66.36 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 12 |
| 156 | 66.37 | wind | 7 | 43200 | > th | dose independent | rect. | 3 | 23 |
| 178 | 66.40 | wind | 7 | 43200 | > th | dose independent | no | NA | NA |
| 187 | 66.41 | wind | 5 | 43200 | > th | dose independent | rect. | 24 | 17 |
| 191 | 66.41 | temperature | 25 | 1440 | > th | dose dependent | sin | 21 | NA |
| 226 | 66.46 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 12 |
| 239 | 66.49 | wind | 5 | 43200 | > th | dose independent | rect. | 8 | 7 |
| 259 | 66.51 | wind | 5 | 43200 | < th | dose independent | rect. | 8 | 7 |
| 270 | 66.52 | wind | 5 | 43200 | > th | dose independent | sin | 2 | NA |
| 271 | 66.52 | wind | 5 | 43200 | < th | dose independent | sin | 2 | NA |
| 272 | 66.52 | wind | 5 | 43200 | > th | dose independent | rect. | 7 | 9 |
| 287 | 66.53 | wind | 9 | 43200 | < th | dose dependent | rect. | 10 | 3 |
| 322 | 66.56 | wind | 5 | 43200 | > th | dose dependent | rect. | 24 | 17 |
| 331 | 66.57 | radiation | 40 | 14400 | > th | dose dependent | rect. | 8 | 1 |
| 344 | 66.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 13 |
| 347 | 66.59 | temperature | 25 | 1440 | > th | dose dependent | rect. | 6 | 17 |
| 348 | 66.59 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 410 | 66.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 1 | 21 |
| 411 | 66.63 | wind | 5 | 43200 | > th | dose dependent | rect. | 19 | 22 |
| 433 | 66.64 | wind | 5 | 43200 | > th | dose dependent | rect. | 21 | 20 |
| 450 | 66.66 | wind | 5 | 43200 | > th | dose dependent | rect. | 8 | 8 |
| 468 | 66.67 | wind | 5 | 43200 | > th | dose dependent | sin | 0 | NA |
| 486 | 66.68 | temperature | 25 | 1440 | > th | dose dependent | rect. | 21 | 21 |
| 566 | 66.75 | wind | 5 | 43200 | > th | dose dependent | rect. | 3 | 23 |
| 590 | 66.78 | wind | 7 | 43200 | < th | dose dependent | rect. | 11 | 1 |
| 597 | 66.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 10 |
| 604 | 66.79 | temperature | 25 | 1440 | > th | dose dependent | rect. | 11 | 22 |
| 645 | 66.83 | wind | 5 | 43200 | > th | dose dependent | no | NA | NA |
| 741 | 66.90 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 23 |
| 753 | 66.92 | wind | 9 | 14400 | > th | dose independent | rect. | 16 | 1 |
| 763 | 66.92 | temperature | 25 | 1440 | > th | dose dependent | rect. | 13 | 21 |
| 839 | 67.00 | temperature | 25 | 1440 | > th | dose dependent | no | NA | NA |
| 997 | 67.21 | wind | 7 | 43200 | < th | dose independent | sin | 17 | NA |