BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0503000 Os05g0503000|AK068335
(282 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61250.1 | chr1:22586035-22588664 FORWARD LENGTH=290 357 4e-99
AT1G11180.2 | chr1:3745829-3748307 FORWARD LENGTH=305 350 6e-97
AT2G20840.1 | chr2:8971925-8974400 REVERSE LENGTH=283 329 1e-90
AT1G03550.1 | chr1:885851-887778 REVERSE LENGTH=284 312 2e-85
AT1G32050.1 | chr1:11528616-11530974 FORWARD LENGTH=265 264 4e-71
>AT1G61250.1 | chr1:22586035-22588664 FORWARD LENGTH=290
Length = 289
Score = 357 bits (916), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 182/288 (63%), Positives = 211/288 (73%), Gaps = 7/288 (2%)
Query: 1 MAGKHGRNGF-EDDDVNPFAGGS-VPPANNSRLPPLSHEPADF---YNVDIPXXX--XXX 53
MA ++ N F E+++VNPFA VPPA+NSRL PL EP F VDIP
Sbjct: 1 MANRYDPNPFAEEEEVNPFANARGVPPASNSRLSPLPPEPVGFDYGRTVDIPLDRAGTQD 60
Query: 54 XXXXXXXXQAMXXXXXXXXXXXXXXXXXXXQAGIVIEDKNWPPFFPLIHHNISNEIPIHL 113
QA +AGIVIE KNWPPFFPLIHH+I+NEIP+HL
Sbjct: 61 LKKKEKELQAKEAELKRREQDLKRKEDAAARAGIVIEVKNWPPFFPLIHHDIANEIPVHL 120
Query: 114 QRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPL 173
QR+QY+ F+++LGL CLFWNIIA TTAW+KGEGV IWLLA+IYFI+GVPG YVLWYRPL
Sbjct: 121 QRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGVTIWLLALIYFIAGVPGGYVLWYRPL 180
Query: 174 YNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGI 233
Y A RT+SAL FGWFFLFY++HI FCV+AAVAPP FKGKSLAGILPAIDV+ AIVGI
Sbjct: 181 YRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPVVFKGKSLAGILPAIDVLSGQAIVGI 240
Query: 234 FYFVGFGLFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSA 281
FYF+GF FCLES++SI VIQQVYMYFRGSGK +M+REAARGAL +A
Sbjct: 241 FYFIGFAFFCLESVVSIWVIQQVYMYFRGSGKQDQMRREAARGALRAA 288
>AT1G11180.2 | chr1:3745829-3748307 FORWARD LENGTH=305
Length = 304
Score = 350 bits (897), Expect = 6e-97, Method: Compositional matrix adjust.
Identities = 181/303 (59%), Positives = 213/303 (70%), Gaps = 22/303 (7%)
Query: 1 MAGKHGRNGF-EDDDVNPFAG-GSVPPANNSRLPPLSHEPADF---YNVDIPXXX----- 50
M G++ RN F E D+VNPFA GSVP A+NSRL PL EPA F VDIP
Sbjct: 1 MGGRYDRNTFDEQDEVNPFANPGSVPAASNSRLSPLPPEPAGFGYGRTVDIPLDRPGSGA 60
Query: 51 ------------XXXXXXXXXXXQAMXXXXXXXXXXXXXXXXXXXQAGIVIEDKNWPPFF 98
QA +AGIVIE KNWP FF
Sbjct: 61 QNNSCLNVTLLGIQDLKKKEKELQAKEADLRRREQDLKRKQDAAARAGIVIEAKNWPTFF 120
Query: 99 PLIHHNISNEIPIHLQRMQYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYF 158
PLIHH+I+NEI + LQR+QY+AF+++LGL LFWNIIA TTAW+KGEGV IWLLA+IYF
Sbjct: 121 PLIHHDIANEILVRLQRLQYIAFATYLGLVLALFWNIIAVTTAWIKGEGVTIWLLAVIYF 180
Query: 159 ISGVPGAYVLWYRPLYNAMRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGI 218
ISGVPG YVLWYRPLY A R++SA FGWFFLFY++HI+FC++AAVAPP FKGKSLAGI
Sbjct: 181 ISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYMLHILFCLFAAVAPPIVFKGKSLAGI 240
Query: 219 LPAIDVIGRSAIVGIFYFVGFGLFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGAL 278
LPAIDV+ A+VGIFYF+GFGLFCLES++SI VIQQVYMYFRGSGKA +M+R+AARGA+
Sbjct: 241 LPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVIQQVYMYFRGSGKADDMRRDAARGAM 300
Query: 279 SSA 281
+A
Sbjct: 301 RAA 303
>AT2G20840.1 | chr2:8971925-8974400 REVERSE LENGTH=283
Length = 282
Score = 329 bits (843), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 174/281 (61%), Positives = 202/281 (71%), Gaps = 1/281 (0%)
Query: 3 GKHGRNGFEDDDVNPFAGGSVPPANNSRLPPLSHEPADF-YNVDIPXXXXXXXXXXXXXX 61
++ + F+D ++NPFA + PA S+L PL EP D +DIP
Sbjct: 2 SRYQSHSFDDGEINPFANPTSVPAATSKLSPLPPEPYDRGATMDIPLDSGKDLKAKEKEL 61
Query: 62 QAMXXXXXXXXXXXXXXXXXXXQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLAF 121
+ QAGIVIE+KNWPPFFPLIHH+ISNEIPIHLQR+QY+AF
Sbjct: 62 REKEAELKRREQEIKRKEDAIAQAGIVIEEKNWPPFFPLIHHDISNEIPIHLQRIQYVAF 121
Query: 122 SSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTES 181
+S LGL CL WNI+A TTAW+KGEG IW LAIIYFISGVPGAYV+WYRPLY AMRT+S
Sbjct: 122 TSMLGLVVCLLWNIVAVTTAWIKGEGPTIWFLAIIYFISGVPGAYVMWYRPLYRAMRTDS 181
Query: 182 ALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFGL 241
ALKFGWFF YL HI FCV+AAVAPP FKGKSL GILPAIDV+ + +VGIFYF+GFG
Sbjct: 182 ALKFGWFFFTYLFHIAFCVFAAVAPPIIFKGKSLTGILPAIDVLSGNILVGIFYFIGFGF 241
Query: 242 FCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSAF 282
FCLESL+SI VIQQVYMYFRGSGKAAEMK+EA R A+ +A
Sbjct: 242 FCLESLVSIWVIQQVYMYFRGSGKAAEMKQEATRRAMMAAL 282
>AT1G03550.1 | chr1:885851-887778 REVERSE LENGTH=284
Length = 283
Score = 312 bits (799), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 163/282 (57%), Positives = 195/282 (69%), Gaps = 2/282 (0%)
Query: 3 GKHGRNGFEDDDVNPFAG-GSVPPANNSRLPPLSHEPADF-YNVDIPXXXXXXXXXXXXX 60
+H N F D+++NPFA SVPPA+NS L PL EP D VDIP
Sbjct: 2 ARHDPNPFADEEINPFANHTSVPPASNSYLKPLPPEPYDRGATVDIPLDSGNDLRAKEME 61
Query: 61 XQAMXXXXXXXXXXXXXXXXXXXQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRMQYLA 120
QA + G+VIE+KNWP FFPLIHH+I NEIPIHLQ++QY+A
Sbjct: 62 LQAKENELKRKEQELKRREDAIARTGVVIEEKNWPEFFPLIHHDIPNEIPIHLQKIQYVA 121
Query: 121 FSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNAMRTE 180
F++ LGL CL WNI+A T AW+KGEG IWLL+IIYF++GVPGAYVLWYRPLY A RT+
Sbjct: 122 FTTLLGLVGCLLWNIVAVTVAWIKGEGPTIWLLSIIYFLAGVPGAYVLWYRPLYRATRTD 181
Query: 181 SALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYFVGFG 240
SALKFG FF FY+ HI FC +AAVAPP F+GKSL G LPAI+++ +A VGI YF+G G
Sbjct: 182 SALKFGAFFFFYVFHIAFCGFAAVAPPVIFQGKSLTGFLPAIELLTTNAAVGIMYFIGAG 241
Query: 241 LFCLESLLSIGVIQQVYMYFRGSGKAAEMKREAARGALSSAF 282
FC+E+LL+I VIQQVY YFRGSGKAAEMKREA + L A
Sbjct: 242 FFCIETLLNIWVIQQVYAYFRGSGKAAEMKREATKSTLMRAL 283
>AT1G32050.1 | chr1:11528616-11530974 FORWARD LENGTH=265
Length = 264
Score = 264 bits (674), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 136/267 (50%), Positives = 174/267 (65%), Gaps = 8/267 (2%)
Query: 1 MAGKHGRNGFEDDD--VNPFA--GGSVPPANNSRLPPLSHEPADFYNVDIPXXXXXXXXX 56
M H N F++D+ VNPF+ GG VP A+ P+ + + VDIP
Sbjct: 1 MNRHHDPNPFDEDEEIVNPFSKGGGRVPAASR----PVEYGQSLDATVDIPLDNMNDSSQ 56
Query: 57 XXXXXQAMXXXXXXXXXXXXXXXXXXXQAGIVIEDKNWPPFFPLIHHNISNEIPIHLQRM 116
+ G+ I+DKNWPPFFP+IHH+I+ EIP+H Q++
Sbjct: 57 KQRKLADWEAELRKKEMDIKRREEAIAKFGVQIDDKNWPPFFPIIHHDIAKEIPVHAQKL 116
Query: 117 QYLAFSSFLGLAACLFWNIIATTTAWVKGEGVIIWLLAIIYFISGVPGAYVLWYRPLYNA 176
QYLAF+S+LG+ CL +N+IAT W+KG GV I+ LA IY + G P +YVLWYRPLY A
Sbjct: 117 QYLAFASWLGIVLCLVFNVIATMVCWIKGGGVKIFFLATIYALIGCPLSYVLWYRPLYRA 176
Query: 177 MRTESALKFGWFFLFYLIHIIFCVWAAVAPPFPFKGKSLAGILPAIDVIGRSAIVGIFYF 236
MRT+SALKFGWFF YLIHI FC+ AA+APP F GKSL G+L AIDVI S + GIFYF
Sbjct: 177 MRTDSALKFGWFFFTYLIHIGFCIVAAIAPPIFFHGKSLTGVLAAIDVISDSLLAGIFYF 236
Query: 237 VGFGLFCLESLLSIGVIQQVYMYFRGS 263
+GFGLFCLESLLS+ V+Q++Y+YFRG+
Sbjct: 237 IGFGLFCLESLLSLWVLQKIYLYFRGN 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.144 0.471
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 5,895,086
Number of extensions: 229072
Number of successful extensions: 626
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 621
Number of HSP's successfully gapped: 6
Length of query: 282
Length of database: 11,106,569
Length adjustment: 97
Effective length of query: 185
Effective length of database: 8,447,217
Effective search space: 1562735145
Effective search space used: 1562735145
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)