BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os03g0582200 Os03g0582200|AK058432
(313 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G61250.1 | chr1:22586035-22588664 FORWARD LENGTH=290 318 3e-87
AT2G20840.1 | chr2:8971925-8974400 REVERSE LENGTH=283 303 8e-83
AT1G11180.2 | chr1:3745829-3748307 FORWARD LENGTH=305 292 1e-79
AT1G03550.1 | chr1:885851-887778 REVERSE LENGTH=284 278 3e-75
AT1G32050.1 | chr1:11528616-11530974 FORWARD LENGTH=265 265 2e-71
>AT1G61250.1 | chr1:22586035-22588664 FORWARD LENGTH=290
Length = 289
Score = 318 bits (814), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 165/297 (55%), Positives = 196/297 (65%), Gaps = 32/297 (10%)
Query: 5 SRYD-NPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSRPSAPPATH--LSPLP 61
+RYD NPF E +EVNPFA+ PPA++ LSPLP
Sbjct: 3 NRYDPNPFAEE--EEVNPFANAR-----------------------GVPPASNSRLSPLP 37
Query: 62 PEPADFYNDFSTPVDIPMDT--SKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIV 119
PEP F D+ VDIP+D ++D+K GIV
Sbjct: 38 PEPVGF--DYGRTVDIPLDRAGTQDLKKKEKELQAKEAELKRREQDLKRKEDAAARAGIV 95
Query: 120 LEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGP 179
+E KNWPPFFP+IH+DI NEIPVHLQR QYV FA+ LGLVLCLFWNII VT AWIKGEG
Sbjct: 96 IEVKNWPPFFPLIHHDIANEIPVHLQRLQYVTFATYLGLVLCLFWNIIAVTTAWIKGEGV 155
Query: 180 KIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSI 239
IW LA+IYFI G PG Y LWYRPLYRA R +SAL FGWFFLFY++HIAFCV+AAV+P +
Sbjct: 156 TIWLLALIYFIAGVPGGYVLWYRPLYRAFRTDSALSFGWFFLFYMLHIAFCVFAAVAPPV 215
Query: 240 LFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK 296
+F GKSL GI PAI ++ IVG+FYF+GFA FCLES++S+WVIQ+VY+YFRGSGK
Sbjct: 216 VFKGKSLAGILPAIDVLSGQAIVGIFYFIGFAFFCLESVVSIWVIQQVYMYFRGSGK 272
>AT2G20840.1 | chr2:8971925-8974400 REVERSE LENGTH=283
Length = 282
Score = 303 bits (776), Expect = 8e-83, Method: Compositional matrix adjust.
Identities = 162/295 (54%), Positives = 198/295 (67%), Gaps = 34/295 (11%)
Query: 5 SRYD-NPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSRPSAPPA--THLSPLP 61
SRY + F++G E+NPFA+ P++ PA + LSPLP
Sbjct: 2 SRYQSHSFDDG---EINPFAN------------------------PTSVPAATSKLSPLP 34
Query: 62 PEPADFYNDFSTPVDIPMDTSKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVLE 121
PEP D +DIP+D+ KD+K GIV+E
Sbjct: 35 PEP----YDRGATMDIPLDSGKDLKAKEKELREKEAELKRREQEIKRKEDAIAQAGIVIE 90
Query: 122 DKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKI 181
+KNWPPFFP+IH+DI NEIP+HLQR QYVAF S+LGLV+CL WNI+ VT AWIKGEGP I
Sbjct: 91 EKNWPPFFPLIHHDISNEIPIHLQRIQYVAFTSMLGLVVCLLWNIVAVTTAWIKGEGPTI 150
Query: 182 WFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILF 241
WFLA+IYFI G PGAY +WYRPLYRAMR +SALKFGWFF YL HIAFCV+AAV+P I+F
Sbjct: 151 WFLAIIYFISGVPGAYVMWYRPLYRAMRTDSALKFGWFFFTYLFHIAFCVFAAVAPPIIF 210
Query: 242 VGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK 296
GKSLTGI PAI ++ ++VG+FYF+GF FCLESL+S+WVIQ+VY+YFRGSGK
Sbjct: 211 KGKSLTGILPAIDVLSGNILVGIFYFIGFGFFCLESLVSIWVIQQVYMYFRGSGK 265
>AT1G11180.2 | chr1:3745829-3748307 FORWARD LENGTH=305
Length = 304
Score = 292 bits (748), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 158/312 (50%), Positives = 190/312 (60%), Gaps = 49/312 (15%)
Query: 6 RYD-NPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSRPSAPPA---THLSPLP 61
RYD N F+E DEVNPFA+ P + PA + LSPLP
Sbjct: 4 RYDRNTFDEQ--DEVNPFAN------------------------PGSVPAASNSRLSPLP 37
Query: 62 PEPADFYNDFSTPVDIPMDTS-----------------KDMKTXXXXXXXXXXXXXXXXX 104
PEPA F + VDIP+D +D+K
Sbjct: 38 PEPAGF--GYGRTVDIPLDRPGSGAQNNSCLNVTLLGIQDLKKKEKELQAKEADLRRREQ 95
Query: 105 XXXXXXXXXXXXGIVLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFW 164
GIV+E KNWP FFP+IH+DI NEI V LQR QY+AFA+ LGLVL LFW
Sbjct: 96 DLKRKQDAAARAGIVIEAKNWPTFFPLIHHDIANEILVRLQRLQYIAFATYLGLVLALFW 155
Query: 165 NIICVTAAWIKGEGPKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYL 224
NII VT AWIKGEG IW LAVIYFI G PG Y LWYRPLYRA R++SA FGWFFLFY+
Sbjct: 156 NIIAVTTAWIKGEGVTIWLLAVIYFISGVPGGYVLWYRPLYRAFRSDSAFNFGWFFLFYM 215
Query: 225 VHIAFCVYAAVSPSILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVI 284
+HI FC++AAV+P I+F GKSL GI PAI ++ +VG+FYF+GF +FCLES++S+WVI
Sbjct: 216 LHILFCLFAAVAPPIVFKGKSLAGILPAIDVLSAQALVGIFYFIGFGLFCLESVVSIWVI 275
Query: 285 QRVYLYFRGSGK 296
Q+VY+YFRGSGK
Sbjct: 276 QQVYMYFRGSGK 287
>AT1G03550.1 | chr1:885851-887778 REVERSE LENGTH=284
Length = 283
Score = 278 bits (711), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/295 (50%), Positives = 186/295 (63%), Gaps = 33/295 (11%)
Query: 5 SRYD-NPFEEGGGDEVNPFADKXXXXXXXXXXXXXXXXFYTTQSRPSAPPATH--LSPLP 61
+R+D NPF + +E+NPFA+ S PPA++ L PLP
Sbjct: 2 ARHDPNPFAD---EEINPFANHT-----------------------SVPPASNSYLKPLP 35
Query: 62 PEPADFYNDFSTPVDIPMDTSKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGIVLE 121
PEP D VDIP+D+ D++ G+V+E
Sbjct: 36 PEPYDR----GATVDIPLDSGNDLRAKEMELQAKENELKRKEQELKRREDAIARTGVVIE 91
Query: 122 DKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEGPKI 181
+KNWP FFP+IH+DI NEIP+HLQ+ QYVAF +LLGLV CL WNI+ VT AWIKGEGP I
Sbjct: 92 EKNWPEFFPLIHHDIPNEIPIHLQKIQYVAFTTLLGLVGCLLWNIVAVTVAWIKGEGPTI 151
Query: 182 WFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPSILF 241
W L++IYF+ G PGAY LWYRPLYRA R +SALKFG FF FY+ HIAFC +AAV+P ++F
Sbjct: 152 WLLSIIYFLAGVPGAYVLWYRPLYRATRTDSALKFGAFFFFYVFHIAFCGFAAVAPPVIF 211
Query: 242 VGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGSGK 296
GKSLTG PAI L+ VG+ YF+G FC+E+LL++WVIQ+VY YFRGSGK
Sbjct: 212 QGKSLTGFLPAIELLTTNAAVGIMYFIGAGFFCIETLLNIWVIQQVYAYFRGSGK 266
>AT1G32050.1 | chr1:11528616-11530974 FORWARD LENGTH=265
Length = 264
Score = 265 bits (678), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 157/236 (66%)
Query: 59 PLPPEPADFYNDFSTPVDIPMDTSKDMKTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGI 118
P P ++ VDIP+D D G+
Sbjct: 28 PAASRPVEYGQSLDATVDIPLDNMNDSSQKQRKLADWEAELRKKEMDIKRREEAIAKFGV 87
Query: 119 VLEDKNWPPFFPIIHNDIGNEIPVHLQRTQYVAFASLLGLVLCLFWNIICVTAAWIKGEG 178
++DKNWPPFFPIIH+DI EIPVH Q+ QY+AFAS LG+VLCL +N+I WIKG G
Sbjct: 88 QIDDKNWPPFFPIIHHDIAKEIPVHAQKLQYLAFASWLGIVLCLVFNVIATMVCWIKGGG 147
Query: 179 PKIWFLAVIYFILGCPGAYYLWYRPLYRAMRNESALKFGWFFLFYLVHIAFCVYAAVSPS 238
KI+FLA IY ++GCP +Y LWYRPLYRAMR +SALKFGWFF YL+HI FC+ AA++P
Sbjct: 148 VKIFFLATIYALIGCPLSYVLWYRPLYRAMRTDSALKFGWFFFTYLIHIGFCIVAAIAPP 207
Query: 239 ILFVGKSLTGIFPAISLIGNTVIVGVFYFLGFAMFCLESLLSMWVIQRVYLYFRGS 294
I F GKSLTG+ AI +I ++++ G+FYF+GF +FCLESLLS+WV+Q++YLYFRG+
Sbjct: 208 IFFHGKSLTGVLAAIDVISDSLLAGIFYFIGFGLFCLESLLSLWVLQKIYLYFRGN 263
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.328 0.145 0.485
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,174,373
Number of extensions: 235033
Number of successful extensions: 1034
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1026
Number of HSP's successfully gapped: 5
Length of query: 313
Length of database: 11,106,569
Length adjustment: 98
Effective length of query: 215
Effective length of database: 8,419,801
Effective search space: 1810257215
Effective search space used: 1810257215
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 111 (47.4 bits)