BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0465100 Os05g0465100|AK065821
(830 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0465100 RabGAP/TBC domain containing protein 1643 0.0
Os03g0283800 RabGAP/TBC domain containing protein 231 1e-60
Os08g0337700 RabGAP/TBC domain containing protein 153 4e-37
Os08g0412600 RabGAP/TBC domain containing protein 92 2e-18
>Os05g0465100 RabGAP/TBC domain containing protein
Length = 830
Score = 1643 bits (4254), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 802/830 (96%), Positives = 802/830 (96%)
Query: 1 MKPKSLPFIAFEHKRDAYGFAVRPQHLQRYKEYAGIYKXXXXXRSDRWKNFLERQSEPSG 60
MKPKSLPFIAFEHKRDAYGFAVRPQHLQRYKEYAGIYK RSDRWKNFLERQSEPSG
Sbjct: 1 MKPKSLPFIAFEHKRDAYGFAVRPQHLQRYKEYAGIYKEEEEERSDRWKNFLERQSEPSG 60
Query: 61 QEEKGEAAGRVVDSSGIGGSSLLQEKIVQGPHKIEIWKPIRPSLGNIEQIMSVRVEEKQS 120
QEEKGEAAGRVVDSSGIGGSSLLQEKIVQGPHKIEIWKPIRPSLGNIEQIMSVRVEEKQS
Sbjct: 61 QEEKGEAAGRVVDSSGIGGSSLLQEKIVQGPHKIEIWKPIRPSLGNIEQIMSVRVEEKQS 120
Query: 121 PASGNQDTKDVIHPVKVQEGKLSEDSDDEFYDVDKVETSQEMHSSDSANTGIDNRGQEEN 180
PASGNQDTKDVIHPVKVQEGKLSEDSDDEFYDVDKVETSQEMHSSDSANTGIDNRGQEEN
Sbjct: 121 PASGNQDTKDVIHPVKVQEGKLSEDSDDEFYDVDKVETSQEMHSSDSANTGIDNRGQEEN 180
Query: 181 FPSMEELECLVHGGLPMALRGELWQAFVGIGVRRVKGYYDSLLVAEGELEDTSGSRSSTS 240
FPSMEELECLVHGGLPMALRGELWQAFVGIGVRRVKGYYDSLLVAEGELEDTSGSRSSTS
Sbjct: 181 FPSMEELECLVHGGLPMALRGELWQAFVGIGVRRVKGYYDSLLVAEGELEDTSGSRSSTS 240
Query: 241 DVAGENTEVSSEKWKGQIEKDLPRTFPGHPALDEDGXXXXXXXXXXXXXHNPAVGYCQAM 300
DVAGENTEVSSEKWKGQIEKDLPRTFPGHPALDEDG HNPAVGYCQAM
Sbjct: 241 DVAGENTEVSSEKWKGQIEKDLPRTFPGHPALDEDGRNALRRLLLAYARHNPAVGYCQAM 300
Query: 301 NFFAGLLLLLMPEENAFWTLVGIIDDYFDGYFSEEMIESQVDQLVLEELVREKFPKLANH 360
NFFAGLLLLLMPEENAFWTLVGIIDDYFDGYFSEEMIESQVDQLVLEELVREKFPKLANH
Sbjct: 301 NFFAGLLLLLMPEENAFWTLVGIIDDYFDGYFSEEMIESQVDQLVLEELVREKFPKLANH 360
Query: 361 LDYLGLQVAWVTGPWFLSIFTNVLPWESVLRVWDVLLFDGNRVMLFRTALALLEFYGPAL 420
LDYLGLQVAWVTGPWFLSIFTNVLPWESVLRVWDVLLFDGNRVMLFRTALALLEFYGPAL
Sbjct: 361 LDYLGLQVAWVTGPWFLSIFTNVLPWESVLRVWDVLLFDGNRVMLFRTALALLEFYGPAL 420
Query: 421 VTTKDAGDAVTLLQSLAGSTFDSSQLVLTARMGYQSVDETGLQELRNKHRPSVLSSMEER 480
VTTKDAGDAVTLLQSLAGSTFDSSQLVLTARMGYQSVDETGLQELRNKHRPSVLSSMEER
Sbjct: 421 VTTKDAGDAVTLLQSLAGSTFDSSQLVLTARMGYQSVDETGLQELRNKHRPSVLSSMEER 480
Query: 481 AKGLGALDTNGLASKLYNFKHDPEPLVSISDSQDQMSDVGDGNANQSDSGNMDDMYGGLT 540
AKGLGALDTNGLASKLYNFKHDPEPLVSISDSQDQMSDVGDGNANQSDSGNMDDMYGGLT
Sbjct: 481 AKGLGALDTNGLASKLYNFKHDPEPLVSISDSQDQMSDVGDGNANQSDSGNMDDMYGGLT 540
Query: 541 VSSEIEALPDPKDQISWLKFELCRLLEERRSAVLRADELETALMEMVKQDNRRQLSAKVX 600
VSSEIEALPDPKDQISWLKFELCRLLEERRSAVLRADELETALMEMVKQDNRRQLSAKV
Sbjct: 541 VSSEIEALPDPKDQISWLKFELCRLLEERRSAVLRADELETALMEMVKQDNRRQLSAKVE 600
Query: 601 XXXXXXXXXRQTLLDKQEQEQAMCQVLLRVEQELKIAEEARISAEQDAAAQRYAVNVLQE 660
RQTLLDKQEQEQAMCQVLLRVEQELKIAEEARISAEQDAAAQRYAVNVLQE
Sbjct: 601 QSEQELSELRQTLLDKQEQEQAMCQVLLRVEQELKIAEEARISAEQDAAAQRYAVNVLQE 660
Query: 661 KYEEAMASLAKMENRAVMAETMLEATLQYQTSQQKALLSPLPSPRTSMIDASPGRANHDS 720
KYEEAMASLAKMENRAVMAETMLEATLQYQTSQQKALLSPLPSPRTSMIDASPGRANHDS
Sbjct: 661 KYEEAMASLAKMENRAVMAETMLEATLQYQTSQQKALLSPLPSPRTSMIDASPGRANHDS 720
Query: 721 SQEFQPKKINLLSPFSLSWRDKNKGKQNNVDDSAKLTDAHDQREEITNNNDEKQVETPKL 780
SQEFQPKKINLLSPFSLSWRDKNKGKQNNVDDSAKLTDAHDQREEITNNNDEKQVETPKL
Sbjct: 721 SQEFQPKKINLLSPFSLSWRDKNKGKQNNVDDSAKLTDAHDQREEITNNNDEKQVETPKL 780
Query: 781 DVLEESMGSPKEDNKSRVEVPKEDSDLASVQVVANDMNGQHEQLQEIKLD 830
DVLEESMGSPKEDNKSRVEVPKEDSDLASVQVVANDMNGQHEQLQEIKLD
Sbjct: 781 DVLEESMGSPKEDNKSRVEVPKEDSDLASVQVVANDMNGQHEQLQEIKLD 830
>Os03g0283800 RabGAP/TBC domain containing protein
Length = 157
Score = 231 bits (590), Expect = 1e-60, Method: Composition-based stats.
Identities = 98/128 (76%), Positives = 110/128 (85%)
Query: 261 DLPRTFPGHPALDEDGXXXXXXXXXXXXXHNPAVGYCQAMNFFAGLLLLLMPEENAFWTL 320
DLPRTFPGHPALDEDG HNP+VGYCQAMNFFAGL LL MPEE+AFW L
Sbjct: 1 DLPRTFPGHPALDEDGRNALRRLLTAYARHNPSVGYCQAMNFFAGLFLLFMPEEHAFWAL 60
Query: 321 VGIIDDYFDGYFSEEMIESQVDQLVLEELVREKFPKLANHLDYLGLQVAWVTGPWFLSIF 380
VG+ID+YFDGY++EEMIESQVDQLVLEE+VRE+FPKLA H+D+LG+QVAWVTGPWFLSIF
Sbjct: 61 VGVIDEYFDGYYTEEMIESQVDQLVLEEVVRERFPKLAKHMDFLGVQVAWVTGPWFLSIF 120
Query: 381 TNVLPWES 388
N+LPWES
Sbjct: 121 INMLPWES 128
>Os08g0337700 RabGAP/TBC domain containing protein
Length = 419
Score = 153 bits (387), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 97/311 (31%), Positives = 159/311 (51%), Gaps = 28/311 (9%)
Query: 187 LECLVHGGLPMALRGELWQAFVGIGVRRV---KGYYDSLLVAEGELEDTSGSRSSTSDVA 243
L L+ G+P LR ++W + G +R + YYD L+ A
Sbjct: 131 LRRLIRKGVPPVLRPKVWLSVSGAAKKRSTVPETYYDELIRA------------------ 172
Query: 244 GENTEVSSEKWKGQIEKDLPRTFPGHPALD-EDGXXXXXXXXXXXXXHNPAVGYCQAMNF 302
TE + QI+ DLPRTFP H L+ E+G + VGYCQ +N+
Sbjct: 173 ---TEGKTTPATLQIDHDLPRTFPCHSWLNSEEGQASLRRVLVGYSFRDSEVGYCQGLNY 229
Query: 303 FAGLLLLLM-PEENAFWTLVGIIDDYF-DGYFSEEMIESQVDQLVLEELVREKFPKLANH 360
A LLLL+M EE+AFW L ++++ + +++ + V+Q V ++L+ +K P++A H
Sbjct: 230 VAALLLLVMKTEEDAFWMLAVLLENVLVNDCYTDNLSGCHVEQRVFKDLLAKKCPRIAAH 289
Query: 361 LDYLGLQVAWVTGPWFLSIFTNVLPWESVLRVWDVLLFDGNRVMLFRTALALLEFYGPAL 420
L+ +G V+ V WFL +F+ LP E+ LRVWDVL +G +V LF ALA+ + L
Sbjct: 290 LEAMGFDVSLVATEWFLCLFSKTLPSETTLRVWDVLFNEGAKV-LFHVALAIFKMREDDL 348
Query: 421 VTTKDAGDAVTLLQSLAGSTFDSSQLVLTARMGYQSVDETGLQELRNKHRPSVLSSMEER 480
+ + GD + +LQ+ A +D +L+ A S+ + + R K V++ +++R
Sbjct: 349 LRIQHIGDVIDILQTTAHHLYDPDELLTFAFDKIGSMTTNTITKERKKQETVVMAELDQR 408
Query: 481 AKGLGALDTNG 491
+ L +L +G
Sbjct: 409 IRRLSSLKMDG 419
>Os08g0412600 RabGAP/TBC domain containing protein
Length = 284
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 95/216 (43%), Gaps = 29/216 (13%)
Query: 191 VHGGLPMALRGELWQAFVGIGVRRVKGYYDSLLVAEGELEDTSGSRSSTSDVAGENTEVS 250
+ G+P LRG +WQ + G D LL+ G E +S S++
Sbjct: 84 IRKGIPDCLRGLVWQL--------ISGSRDLLLMNPGVYETLVIYETSASEL-------- 127
Query: 251 SEKWKGQIEKDLPRTFPGHPALDE---DGXXXXXXXXXXXXXHNPAVGYCQAMNFFAGLL 307
+I +D+ RTFP H + G ++ VGY Q M F AGLL
Sbjct: 128 ------EIIRDISRTFPSHIFFQQRHGPGQRSLYNVLKAYSVYDRDVGYVQGMGFLAGLL 181
Query: 308 LLLMPEENAFWTLV----GIIDDYFDGYFSEEMIESQVDQLVLEELVREKFPKLANHLDY 363
LL M EE+AFW LV G + +G + + Q E+LV E+ P+L H
Sbjct: 182 LLYMSEEDAFWLLVALLKGAVHAPMEGLYQAGLPLVQQYLYQFEKLVLEQMPQLGQHFIE 241
Query: 364 LGLQVAWVTGPWFLSIFTNVLPWESVLRVWDVLLFD 399
+ + WF+++F+ P+ LRVWDV L++
Sbjct: 242 EMINPSMYASQWFITVFSYSFPFHLTLRVWDVFLYE 277
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.312 0.130 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 26,929,827
Number of extensions: 1137889
Number of successful extensions: 3180
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 3172
Number of HSP's successfully gapped: 4
Length of query: 830
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 721
Effective length of database: 11,344,475
Effective search space: 8179366475
Effective search space used: 8179366475
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 160 (66.2 bits)