Os05g0465100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RabGAP/TBC domain containing protein.
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Os05g0465100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : RabGAP/TBC domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = humidity,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 23.99 | 0.23 | 9.48 | -0.374 | 0.672 | 0.398 | -0.285 | 0.673 | 0.0516 | 20.7 | 63.45 | 2627 | -- | -- |
| 24.35 | 0.23 | 9.48 | -0.422 | 0.656 | 0.597 | -0.23 | -- | 0.0551 | 20.7 | 58.26 | 2617 | -- | -- |
| 24.22 | 0.229 | 9.48 | -0.366 | 0.674 | 0.397 | -- | 0.65 | 0.0486 | 20.8 | 63 | 2654 | -- | -- |
| 24.55 | 0.231 | 9.49 | -0.408 | 0.661 | 0.595 | -- | -- | 0.0449 | 20.8 | 58.16 | 2628 | -- | -- |
| 38.85 | 0.29 | 9.47 | -0.421 | -- | 0.79 | -- | 0.103 | -0.0577 | -- | 86.65 | 788 | -- | -- |
| 29.84 | 0.256 | 9.51 | -0.299 | 0.698 | -- | -0.14 | -- | -0.0464 | 21 | -- | -- | -- | -- |
| 29.9 | 0.256 | 9.51 | -0.294 | 0.698 | -- | -- | -- | -0.0465 | 21.1 | -- | -- | -- | -- |
| 38.41 | 0.289 | 9.49 | -0.358 | -- | 0.832 | -- | -- | -0.0419 | -- | 89.34 | 789 | -- | -- |
| 28.65 | 0.249 | 9.5 | -- | 0.657 | 0.411 | -- | -- | 0.012 | 21.2 | 77.11 | 3409 | -- | -- |
| 58 | 0.356 | 9.49 | -0.293 | -- | -- | -- | -- | -0.0506 | -- | -- | -- | -- | -- |
| 32.18 | 0.265 | 9.5 | -- | 0.699 | -- | -- | -- | -0.0138 | 21 | -- | -- | -- | -- |
| 41.62 | 0.3 | 9.49 | -- | -- | 0.864 | -- | -- | -0.0266 | -- | 136.2 | 780 | -- | -- |
| 60.26 | 0.362 | 9.48 | -- | -- | -- | -- | -- | -0.0181 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.96 | humidity | 60 | 4320 | < th | dose dependent | rect. | 15 | 4 |
| 17 | 24.12 | humidity | 50 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 18 | 24.14 | humidity | 60 | 4320 | < th | dose dependent | sin | 12 | NA |
| 21 | 24.22 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 22 | 24.22 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 8 |
| 25 | 24.22 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 17 |
| 32 | 24.23 | humidity | 50 | 4320 | > th | dose independent | rect. | 14 | 18 |
| 39 | 24.25 | humidity | 70 | 4320 | < th | dose dependent | rect. | 17 | 3 |
| 51 | 24.26 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 17 |
| 82 | 24.31 | humidity | 50 | 4320 | > th | dose independent | sin | 14 | NA |
| 87 | 24.33 | humidity | 50 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 95 | 24.43 | humidity | 70 | 720 | > th | dose independent | sin | 11 | NA |
| 112 | 24.47 | humidity | 70 | 720 | > th | dose independent | rect. | 17 | 14 |
| 123 | 24.52 | humidity | 50 | 4320 | < th | dose independent | sin | 12 | NA |
| 127 | 24.55 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 20 |
| 129 | 24.56 | humidity | 50 | 4320 | < th | dose independent | rect. | 15 | 2 |
| 131 | 24.57 | humidity | 60 | 1440 | < th | dose independent | rect. | 15 | 22 |
| 133 | 24.58 | humidity | 50 | 4320 | < th | dose independent | rect. | 14 | 4 |
| 171 | 24.60 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 17 |
| 205 | 24.63 | humidity | 60 | 14400 | < th | dose independent | rect. | 17 | 17 |
| 209 | 24.64 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 1 |
| 245 | 24.69 | humidity | 60 | 1440 | > th | dose independent | rect. | 9 | 10 |
| 247 | 24.69 | humidity | 70 | 1440 | < th | dose independent | rect. | 17 | 14 |
| 248 | 24.69 | humidity | 60 | 1440 | > th | dose independent | rect. | 9 | 15 |
| 259 | 24.70 | humidity | 60 | 1440 | < th | dose independent | rect. | 10 | 9 |
| 278 | 24.71 | humidity | 70 | 1440 | < th | dose independent | sin | 11 | NA |
| 328 | 24.73 | humidity | 60 | 1440 | < th | dose independent | sin | 18 | NA |
| 339 | 24.73 | humidity | 60 | 1440 | > th | dose independent | rect. | 7 | 17 |
| 350 | 24.74 | humidity | 60 | 1440 | > th | dose independent | no | NA | NA |
| 450 | 24.76 | humidity | 60 | 1440 | < th | dose independent | no | NA | NA |
| 543 | 24.78 | humidity | 70 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 759 | 24.90 | humidity | 60 | 14400 | > th | dose independent | rect. | 17 | 1 |
| 808 | 24.92 | humidity | 60 | 1440 | < th | dose dependent | rect. | 12 | 7 |
| 998 | 24.98 | humidity | 70 | 1440 | < th | dose dependent | rect. | 9 | 11 |