BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0444300 Os05g0444300|AK066046
(354 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0444300 Protein of unknown function DUF914, eukaryotic... 662 0.0
Os05g0299500 Protein of unknown function DUF914, eukaryotic... 284 6e-77
Os08g0540000 Protein of unknown function DUF914, eukaryotic... 281 7e-76
Os09g0513200 Protein of unknown function DUF914, eukaryotic... 249 2e-66
Os05g0444400 239 2e-63
Os05g0299650 127 2e-29
>Os05g0444300 Protein of unknown function DUF914, eukaryotic family protein
Length = 354
Score = 662 bits (1709), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 329/354 (92%), Positives = 329/354 (92%)
Query: 1 MVLTIMEAKGKDAWXXXXXXXXXXXXAFSMAVSSFTSSLIATLGVDAPLTQSFFAXXXXX 60
MVLTIMEAKGKDAW AFSMAVSSFTSSLIATLGVDAPLTQSFFA
Sbjct: 1 MVLTIMEAKGKDAWGLLLVLLLGQLVAFSMAVSSFTSSLIATLGVDAPLTQSFFAYLLLT 60
Query: 61 XXXXXXXXKRRQKLQIPWYWYLALAFIDVQGNYLVVKAYQYSYITSVTLLDCWTVVWVVI 120
KRRQKLQIPWYWYLALAFIDVQGNYLVVKAYQYSYITSVTLLDCWTVVWVVI
Sbjct: 61 LVYVPILLKRRQKLQIPWYWYLALAFIDVQGNYLVVKAYQYSYITSVTLLDCWTVVWVVI 120
Query: 121 LTWYALGTRYSFWQIVGAGTCVAGLALVLLSDSKSADAQDPSKIPLLGDALVIAGTIFFA 180
LTWYALGTRYSFWQIVGAGTCVAGLALVLLSDSKSADAQDPSKIPLLGDALVIAGTIFFA
Sbjct: 121 LTWYALGTRYSFWQIVGAGTCVAGLALVLLSDSKSADAQDPSKIPLLGDALVIAGTIFFA 180
Query: 181 FSNVGEEYCVKKKDRVEFVAMFALFGLLVSIIQILIFEKKNLVAIAWSPTMLCLFAGFAV 240
FSNVGEEYCVKKKDRVEFVAMFALFGLLVSIIQILIFEKKNLVAIAWSPTMLCLFAGFAV
Sbjct: 181 FSNVGEEYCVKKKDRVEFVAMFALFGLLVSIIQILIFEKKNLVAIAWSPTMLCLFAGFAV 240
Query: 241 ALFMFYSITPFVLKMSGSTLFNLSLLTSDMWAVAIRVLFYHQQINWLYYIAFAVVAIGLI 300
ALFMFYSITPFVLKMSGSTLFNLSLLTSDMWAVAIRVLFYHQQINWLYYIAFAVVAIGLI
Sbjct: 241 ALFMFYSITPFVLKMSGSTLFNLSLLTSDMWAVAIRVLFYHQQINWLYYIAFAVVAIGLI 300
Query: 301 IYSLNDHSSDSGTRTTANTEAAAQYQQLPGENNSTGIGSNDSQERKQEEEVHIC 354
IYSLNDHSSDSGTRTTANTEAAAQYQQLPGENNSTGIGSNDSQERKQEEEVHIC
Sbjct: 301 IYSLNDHSSDSGTRTTANTEAAAQYQQLPGENNSTGIGSNDSQERKQEEEVHIC 354
>Os05g0299500 Protein of unknown function DUF914, eukaryotic family protein
Length = 365
Score = 284 bits (727), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 144/302 (47%), Positives = 191/302 (63%), Gaps = 3/302 (0%)
Query: 33 SSFTSSLIATLGVDAPLTQSFFAXXXXXXXXXXXXXKRRQKLQIPWYWYLALAFIDVQGN 92
+ F SS ++ G++ P +QS RR+ LQ+ WY+YL LA +DV+ N
Sbjct: 32 TGFASSELSRRGINVPTSQSLLNYVLLGVVYGSILLYRRKSLQMKWYYYLVLALVDVEAN 91
Query: 93 YLVVKAYQYSYITSVTLLDCWTVVWVVILTWYALGTRYSFWQIVGAGTCVAGLALVLLSD 152
YLVVKAYQY+ +TSV LLDCW + V+ LTW L T Y F + G CV+GL LV+ SD
Sbjct: 92 YLVVKAYQYTSLTSVMLLDCWAIPAVIFLTWMFLKTNYRFRKYSGVAICVSGLVLVVFSD 151
Query: 153 SKSADAQDPSKIPLLGDALVIAGTIFFAFSNVGEEYCVKKKDRVEFVAMFALFGLLVSII 212
+ D + P+ GD LVIAG +A SNV EE+ VK DRVE + M LFG ++S
Sbjct: 152 VHAGDRAGGTS-PVKGDILVIAGATLYAISNVSEEFLVKVGDRVELMGMLGLFGAIISAC 210
Query: 213 QILIFEKKNLVAIAWSPTMLCLFAGFAVALFMFYSITPFVLKMSGSTLFNLSLLTSDMWA 272
QI IFE+ + +I WS + F GFAVA+FMFYS+ P +LK+SGST+ NLSLLTSDMWA
Sbjct: 211 QISIFERNEIKSIQWSVGAVVPFIGFAVAMFMFYSLVPILLKISGSTMLNLSLLTSDMWA 270
Query: 273 VAIRVLFYHQQINWLYYIAFAVVAIGLIIYSLNDHSSDSGTRTTANTEAAAQYQQLPGEN 332
+ IR+ YH++++W+YY+AF VAIGL+IYS D +SD G R EA +LP E
Sbjct: 271 ILIRLFAYHEKVDWMYYVAFGAVAIGLVIYS-GDSNSDDGRRGQV-AEATDVEGKLPDEE 328
Query: 333 NS 334
+
Sbjct: 329 EA 330
>Os08g0540000 Protein of unknown function DUF914, eukaryotic family protein
Length = 344
Score = 281 bits (718), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 143/303 (47%), Positives = 197/303 (65%), Gaps = 6/303 (1%)
Query: 33 SSFTSSLIATLGVDAPLTQSFFAXXXXXXXXXXXXXKRRQKLQIPWYWYLALAFIDVQGN 92
+ F+SS +A G++AP +QS RRQ L I WY+YL L IDV+ N
Sbjct: 41 TGFSSSELARRGINAPTSQSLLNYILLSLIYGGILIYRRQPLTIKWYYYLILGIIDVEAN 100
Query: 93 YLVVKAYQYSYITSVTLLDCWTVVWVVILTWYALGTRYSFWQIVGAGTCVAGLALVLLSD 152
Y+VVK+YQY+ +TSV LLDCW++ V+ILTW L T+Y + +G G CVAGL LV+ SD
Sbjct: 101 YIVVKSYQYTSLTSVMLLDCWSIPCVIILTWIFLKTKYGLRKFIGVGVCVAGLILVVFSD 160
Query: 153 SKSAD-AQDPSKIPLLGDALVIAGTIFFAFSNVGEEYCVKKKDRVEFVAMFALFGLLVSI 211
++D A+ P+ PL GD LVI G++ +A SNV EEY VKK +R+E +AM LFG ++S
Sbjct: 161 VHASDRAKGPN--PLKGDLLVIFGSMLYACSNVTEEYLVKKSNRIELMAMLGLFGAIISG 218
Query: 212 IQILIFEKKNLVAIAWSPTMLCLFAGFAVALFMFYSITPFVLKMSGSTLFNLSLLTSDMW 271
IQI I E+K L +I W+ + F GFA+A+F+FYS P VLK+ G+T+ NLSLLTSDMW
Sbjct: 219 IQISILERKELHSIKWNAGAVLPFLGFALAMFLFYSTVPTVLKICGATMLNLSLLTSDMW 278
Query: 272 AVAIRVLFYHQQINWLYYIAFAVVAIGLIIYSLNDHSSDSGTRTTANTEAAAQYQQLPGE 331
AV IR+ YH++++W+Y++AFA A GL+IYS + S TA A+ Q G+
Sbjct: 279 AVLIRIFAYHEKVDWIYFVAFAGTAAGLLIYS---YKSSKEAEETAQVAGASDKQGKAGD 335
Query: 332 NNS 334
+
Sbjct: 336 EEA 338
>Os09g0513200 Protein of unknown function DUF914, eukaryotic family protein
Length = 367
Score = 249 bits (636), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/322 (42%), Positives = 192/322 (59%), Gaps = 20/322 (6%)
Query: 33 SSFTSSLIATLGVDAPLTQSFFAXXXXXXXXXXXXXKRRQKLQIPWYWYLALAFIDVQGN 92
+ F+SS +A GV+AP +QS RRQ L I WY++L L +DV+ N
Sbjct: 30 TGFSSSELARRGVNAPTSQSLLNYVLLALVYGGILIYRRQHLTIKWYYFLILGIVDVEAN 89
Query: 93 YLVVKAYQYSYITSVTLLDCWTVVWVVILTWYALGTRYSFWQIVGAGTCVAGLALVLLSD 152
Y+VVKAYQY+ +TSV L+DCW + V++LTW L T+Y + +G CVAG+ LV+ SD
Sbjct: 90 YIVVKAYQYTSLTSVMLIDCWAIPCVILLTWVFLKTKYGLRKFIGVVICVAGIILVVFSD 149
Query: 153 SKSAD-AQDPSKIPLLGDALVIAGTIFFAFSNVGEEYCVKKKDRVEFVAMFALFGLLVSI 211
++D A+ P+ PL GD VIAG + +A SNV EEY VKK R+E +AM +FG ++
Sbjct: 150 VHASDRAKGPN--PLKGDLFVIAGAMLYAVSNVTEEYFVKKSSRIEVMAMLGVFG---AV 204
Query: 212 IQILIFEKKNLVAIAWSPTMLCL-FAGFAVALFMFYSITPFVLKMSGSTLFNLSLLTSDM 270
I KN ML L F GFAVA+F+FYS P +LK+ G+T+ NLSLLTSDM
Sbjct: 205 ISEAYLNDKNF---GQPNGMLILPFIGFAVAMFLFYSTVPIILKICGATMLNLSLLTSDM 261
Query: 271 WAVAIRVLFYHQQINWLYYIAFAVVAIGLIIYSLNDHSSDSGTRTTANTEAAAQYQQLPG 330
WAV IR+ YH++++W+Y++AFA A GL+IYS G++ E AQ
Sbjct: 262 WAVLIRIFAYHEKVDWMYFVAFAGTAAGLVIYSYK------GSKV---AEETAQVAGATD 312
Query: 331 ENNSTGI-GSNDSQERKQEEEV 351
E +T + G+ D + +EV
Sbjct: 313 EEAATRVAGAGDDEPASTNKEV 334
>Os05g0444400
Length = 182
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 113/176 (64%), Positives = 132/176 (75%)
Query: 44 GVDAPLTQSFFAXXXXXXXXXXXXXKRRQKLQIPWYWYLALAFIDVQGNYLVVKAYQYSY 103
G DAP TQSF + R++K +PWYWYLALAFIDVQGN L +KAY YSY
Sbjct: 4 GADAPFTQSFLSYLLLALVYGPVLLHRQRKFLMPWYWYLALAFIDVQGNCLAIKAYHYSY 63
Query: 104 ITSVTLLDCWTVVWVVILTWYALGTRYSFWQIVGAGTCVAGLALVLLSDSKSADAQDPSK 163
ITSV LL+CWT+ WV+ILT +ALGTRYS WQ VGAGTC+ GLALVLLSDS +D QD SK
Sbjct: 64 ITSVNLLNCWTITWVMILTRFALGTRYSLWQFVGAGTCMTGLALVLLSDSNYSDVQDESK 123
Query: 164 IPLLGDALVIAGTIFFAFSNVGEEYCVKKKDRVEFVAMFALFGLLVSIIQILIFEK 219
PLLGDAL+I T FAFSNVGEEYCVK KDR+EFVAM +FG+LV+ IQ+ ++
Sbjct: 124 RPLLGDALIIVATFCFAFSNVGEEYCVKNKDRIEFVAMLGIFGMLVTGIQLYPYQN 179
>Os05g0299650
Length = 256
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 63/119 (52%), Positives = 82/119 (68%), Gaps = 2/119 (1%)
Query: 216 IFEKKNLVAIAWSPTMLCLFAGFAVALFMFYSITPFVLKMSGSTLFNLSLLTSDMWAVAI 275
IFE +I WS + F GFAVA+FMFYS+ P +LK+SGST+ NLSLL SDMWA+ I
Sbjct: 125 IFEHNEKKSIQWSVGAVVPFIGFAVAMFMFYSLVPILLKISGSTMLNLSLLASDMWAILI 184
Query: 276 RVLFYHQQINWLYYIAFAVVAIGLIIYSLNDHSSDSGTRTTANTEAAAQYQQLPGENNS 334
RV YH++++W+YY+AF VVAIGL+IYS D +SD G R+ EA +LP E +
Sbjct: 185 RVFAYHEKVDWMYYVAFGVVAIGLVIYS-GDSNSDDG-RSGQVAEATDVEGKLPDEEEA 241
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.325 0.136 0.416
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,683,412
Number of extensions: 348825
Number of successful extensions: 1328
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 1319
Number of HSP's successfully gapped: 6
Length of query: 354
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 252
Effective length of database: 11,709,973
Effective search space: 2950913196
Effective search space used: 2950913196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 156 (64.7 bits)