Os05g0444300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Protein of unknown function DUF914, eukaryotic family protein.
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Os05g0444300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Protein of unknown function DUF914, eukaryotic family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = wind,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 130.14 | 0.536 | 6.81 | -0.406 | 0.87 | -0.544 | -0.621 | 1.88 | -0.365 | 9.03 | 6.799 | 4516 | -- | -- |
| 132.55 | 0.536 | 6.85 | -0.356 | 0.867 | -0.728 | -0.328 | -- | -0.371 | 8.92 | 6.798 | 4425 | -- | -- |
| 131.41 | 0.534 | 6.81 | -0.424 | 0.875 | -0.559 | -- | 1.85 | -0.366 | 8.88 | 6.758 | 4516 | -- | -- |
| 133.21 | 0.538 | 6.84 | -0.365 | 0.855 | -0.855 | -- | -- | -0.37 | 8.84 | 6.796 | 4425 | -- | -- |
| 173.75 | 0.614 | 6.84 | -0.341 | -- | -0.811 | -- | 1.17 | -0.357 | -- | 7 | 4425 | -- | -- |
| 145.2 | 0.565 | 6.86 | -0.671 | 0.903 | -- | -0.682 | -- | -0.446 | 9.18 | -- | -- | -- | -- |
| 146.77 | 0.567 | 6.86 | -0.696 | 0.91 | -- | -- | -- | -0.447 | 9.04 | -- | -- | -- | -- |
| 174.43 | 0.615 | 6.86 | -0.3 | -- | -1.01 | -- | -- | -0.347 | -- | 6.9 | 4411 | -- | -- |
| 136.52 | 0.544 | 6.84 | -- | 0.869 | -0.976 | -- | -- | -0.33 | 8.83 | 6.781 | 4425 | -- | -- |
| 194.38 | 0.651 | 6.89 | -0.698 | -- | -- | -- | -- | -0.442 | -- | -- | -- | -- | -- |
| 159.56 | 0.591 | 6.85 | -- | 0.909 | -- | -- | -- | -0.37 | 9.09 | -- | -- | -- | -- |
| 176.66 | 0.619 | 6.86 | -- | -- | -1.14 | -- | -- | -0.348 | -- | 6.911 | 4417 | -- | -- |
| 207.22 | 0.672 | 6.87 | -- | -- | -- | -- | -- | -0.365 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 125.16 | temperature | 15 | 30 | > th | dose independent | rect. | 3 | 23 |
| 3 | 127.26 | wind | 5 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 4 | 127.53 | wind | 7 | 4320 | > th | dose dependent | rect. | 15 | 1 |
| 5 | 127.55 | temperature | 15 | 270 | > th | dose independent | rect. | 19 | 13 |
| 6 | 127.86 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 14 | 6 |
| 7 | 127.95 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 4 | 1 |
| 14 | 128.04 | wind | 7 | 4320 | > th | dose independent | rect. | 15 | 1 |
| 16 | 128.06 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 18 | 128.08 | atmosphere | 1015 | 43200 | > th | dose dependent | rect. | 3 | 6 |
| 35 | 128.15 | humidity | 80 | 14400 | > th | dose dependent | rect. | 4 | 2 |
| 57 | 128.25 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 58 | 128.25 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 8 | 3 |
| 59 | 128.26 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 4 | 1 |
| 61 | 128.26 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 2 |
| 63 | 128.27 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 4 | 1 |
| 66 | 128.28 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 8 | 3 |
| 72 | 128.29 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 5 | 6 |
| 75 | 128.29 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 7 |
| 78 | 128.30 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 91 | 128.31 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 4 | 7 |
| 130 | 128.35 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 15 | 5 |
| 193 | 128.43 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 13 | 1 |
| 225 | 128.48 | temperature | 15 | 10 | > th | dose independent | rect. | 20 | 15 |
| 239 | 128.50 | wind | 9 | 30 | < th | dose independent | rect. | 3 | 23 |
| 281 | 128.56 | atmosphere | 1015 | 43200 | > th | dose independent | sin | 3 | NA |
| 284 | 128.56 | atmosphere | 1015 | 4320 | < th | dose independent | rect. | 13 | 1 |
| 289 | 128.57 | atmosphere | 1015 | 43200 | < th | dose independent | sin | 3 | NA |
| 291 | 128.57 | atmosphere | 1015 | 4320 | > th | dose independent | rect. | 12 | 1 |
| 330 | 128.60 | atmosphere | 1015 | 43200 | > th | dose dependent | sin | 4 | NA |
| 332 | 128.60 | humidity | 80 | 14400 | > th | dose dependent | rect. | 2 | 5 |
| 334 | 128.61 | wind | 5 | 4320 | > th | dose independent | rect. | 24 | 2 |
| 393 | 128.67 | humidity | 50 | 14400 | > th | dose dependent | rect. | 3 | 3 |
| 403 | 128.70 | wind | 7 | 4320 | < th | dose independent | rect. | 15 | 1 |
| 452 | 128.76 | wind | 5 | 4320 | < th | dose independent | rect. | 24 | 2 |
| 489 | 128.81 | wind | 5 | 4320 | < th | dose independent | rect. | 23 | 16 |
| 524 | 128.85 | wind | 5 | 4320 | > th | dose independent | rect. | 23 | 16 |
| 542 | 128.88 | temperature | 15 | 720 | > th | dose independent | rect. | 19 | 5 |
| 561 | 128.89 | atmosphere | 1015 | 4320 | > th | dose dependent | rect. | 11 | 6 |
| 661 | 129.00 | temperature | 30 | 10 | < th | dose independent | rect. | 20 | 15 |
| 758 | 129.08 | atmosphere | 1015 | 43200 | < th | dose independent | no | NA | NA |
| 779 | 129.10 | atmosphere | 1015 | 43200 | > th | dose independent | no | NA | NA |
| 789 | 129.10 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 13 | 23 |
| 800 | 129.11 | atmosphere | 1015 | 43200 | < th | dose independent | rect. | 7 | 23 |
| 818 | 129.13 | humidity | 60 | 43200 | < th | dose independent | rect. | 23 | 10 |
| 840 | 129.14 | atmosphere | 1015 | 43200 | > th | dose independent | rect. | 7 | 23 |
| 884 | 129.18 | wind | 9 | 43200 | > th | dose independent | rect. | 15 | 1 |
| 887 | 129.18 | wind | 5 | 4320 | > th | dose independent | rect. | 23 | 14 |
| 932 | 129.22 | wind | 5 | 4320 | < th | dose independent | rect. | 19 | 20 |
| 956 | 129.24 | temperature | 30 | 30 | < th | dose independent | rect. | 3 | 23 |
| 974 | 129.26 | temperature | 20 | 4320 | < th | dose dependent | rect. | 6 | 1 |