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Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os08g0540000

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Protein of unknown function DUF914, eukaryotic family protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12 (0.0301) R2 : 0.793
β1 : -- (--) R2dD : -- R2D : --
β2 : 3.21 (0.0774) R2dC : 0.785 R2C : 0.78
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.293 (0.0632) R2dN8 : 0.0126 R2N8 : 0.00763
σ : 0.566
deviance : 146.57
__
_____
C
peak time of C : 19.6
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
134.62 0.545 12 0.431 3.21 -0.712 -0.122 -0.142 -0.263 20.5 8.37 256 -- --
134.65 0.54 12 0.434 3.22 -0.714 -0.19 -- -0.259 20.5 8.35 248 -- --
134.62 0.54 12 0.433 3.21 -0.698 -- -0.167 -0.261 20.4 8.37 249 -- --
134.77 0.541 12 0.437 3.22 -0.707 -- -- -0.26 20.4 8.35 248 -- --
215.88 0.684 12 0.11 -- -4.2 -- 2.44 -0.671 -- 2.037 869 -- --
142.06 0.559 11.9 0.411 3.21 -- -0.0775 -- -0.247 19.6 -- -- -- --
142.08 0.558 11.9 0.413 3.21 -- -- -- -0.247 19.6 -- -- -- --
199.21 0.657 11.9 0.0901 -- -4.31 -- -- -0.459 -- 1.55 904 -- --
138.44 0.548 12 -- 3.2 -0.64 -- -- -0.33 20.3 10.3 250 -- --
694.45 1.23 11.9 0.367 -- -- -- -- -0.296 -- -- -- -- --
146.57 0.566 12 -- 3.21 -- -- -- -0.293 19.6 -- -- -- --
199.4 0.658 11.9 -- -- -4.36 -- -- -0.473 -- 1.55 909 -- --
698 1.23 11.9 -- -- -- -- -- -0.337 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 121.23 radiation 40.0 10 < th dose independent rect. 4 20
3 122.26 temperature 15.0 10 > th dose dependent rect. 4 5
4 122.46 temperature 15.0 10 > th dose independent rect. 4 20
6 122.58 wind 7.0 10 < th dose dependent rect. 4 5
11 123.25 temperature 20.0 10 > th dose independent rect. 4 5
12 123.26 atmosphere 995.0 10 > th dose dependent rect. 24 4
13 123.27 radiation 40.0 10 < th dose dependent rect. 4 20
14 123.28 atmosphere 1015.0 10 < th dose independent rect. 4 20
19 123.61 wind 5.0 10 < th dose independent rect. 4 5
24 123.99 wind 9.0 10 < th dose independent rect. 9 19
26 124.01 atmosphere 995.0 270 > th dose dependent rect. 23 2
33 124.27 temperature 20.0 270 > th dose dependent rect. 3 3
34 124.29 precipitation 0.1 10 < th dose independent rect. 4 5
36 124.29 precipitation 0.1 10 < th dose dependent rect. 4 5
39 124.33 atmosphere 1000.0 10 > th dose independent rect. 24 4
41 124.39 humidity 50.0 10 > th dose dependent rect. 4 9
42 124.43 radiation 30.0 10 < th dose independent rect. 4 5
44 124.45 precipitation 0.1 10 < th dose independent rect. 4 20
46 124.45 precipitation 0.1 10 < th dose dependent rect. 4 20
50 124.49 temperature 10.0 10 > th dose independent rect. 4 5
52 124.49 temperature 30.0 10 < th dose independent rect. 4 5
53 124.49 humidity 50.0 10 > th dose independent rect. 4 5
55 124.49 atmosphere 995.0 10 > th dose independent rect. 4 5
56 124.49 atmosphere 1015.0 10 < th dose independent rect. 4 5
57 124.49 temperature 10.0 10 > th dose independent rect. 9 19
59 124.52 wind 9.0 10 < th dose independent rect. 24 4
60 124.52 temperature 10.0 10 > th dose independent rect. 24 4
61 124.52 temperature 30.0 10 < th dose independent rect. 24 4
62 124.52 humidity 50.0 10 > th dose independent rect. 24 4
66 124.52 radiation 1.0 10 < th dose independent rect. 24 4
72 124.52 radiation 1.0 10 < th dose dependent rect. 24 4
78 124.57 atmosphere 1015.0 10 < th dose dependent rect. 4 5
88 124.80 atmosphere 995.0 270 > th dose dependent rect. 22 4
90 124.84 atmosphere 1015.0 10 < th dose independent rect. 24 4
94 124.92 temperature 15.0 270 > th dose independent rect. 1 22
96 124.93 temperature 15.0 270 > th dose dependent rect. 4 1
99 124.97 humidity 50.0 10 > th dose dependent rect. 4 20
110 125.00 humidity 50.0 10 > th dose dependent rect. 24 4
117 125.08 wind 9.0 10 < th dose dependent rect. 24 4
124 125.14 wind 5.0 30 < th dose dependent rect. 4 7
133 125.22 precipitation 0.1 10 < th dose independent rect. 24 4
134 125.22 radiation 20.0 30 < th dose independent rect. 4 8
135 125.22 precipitation 0.1 10 < th dose dependent rect. 24 4
139 125.26 radiation 40.0 30 < th dose independent rect. 4 7
141 125.29 wind 9.0 270 < th dose independent rect. 23 2
142 125.29 temperature 10.0 270 > th dose independent rect. 23 2
143 125.29 temperature 30.0 270 < th dose independent rect. 23 2
144 125.29 humidity 50.0 270 > th dose independent rect. 23 2
147 125.29 atmosphere 995.0 270 > th dose independent rect. 23 2
148 125.29 radiation 1.0 270 < th dose independent rect. 23 2
156 125.29 radiation 1.0 270 < th dose dependent rect. 23 2
172 125.38 radiation 40.0 10 < th dose dependent rect. 4 8
175 125.40 precipitation 0.1 270 < th dose independent rect. 23 2
176 125.40 precipitation 0.1 270 < th dose dependent rect. 23 2
177 125.44 wind 9.0 10 < th dose independent rect. 4 20
179 125.46 temperature 10.0 10 > th dose dependent rect. 24 4
180 125.47 wind 5.0 270 < th dose independent rect. 4 1
203 125.74 precipitation 0.1 270 < th dose independent rect. 1 22
204 125.74 precipitation 0.1 270 < th dose dependent rect. 1 22
205 125.75 precipitation 0.1 30 < th dose independent rect. 9 19
208 125.75 precipitation 0.1 30 < th dose dependent rect. 9 19
211 125.80 atmosphere 995.0 10 > th dose independent rect. 4 20
221 125.90 atmosphere 995.0 10 > th dose independent rect. 9 19
227 125.97 wind 7.0 270 < th dose dependent rect. 4 1
233 126.05 wind 1.0 270 > th dose independent rect. 23 2
234 126.06 temperature 15.0 270 > th dose independent rect. 2 20
260 126.19 atmosphere 1015.0 270 < th dose independent rect. 2 20
262 126.19 radiation 40.0 270 < th dose dependent rect. 2 9
280 126.35 temperature 15.0 270 > th dose independent rect. 17 14
313 126.47 temperature 30.0 10 < th dose independent rect. 4 7
336 126.50 radiation 10.0 270 < th dose dependent rect. 2 20
337 126.51 humidity 50.0 10 > th dose dependent rect. 4 5
340 126.52 humidity 60.0 10 > th dose independent rect. 4 20
342 126.53 humidity 50.0 270 > th dose dependent rect. 23 2
347 126.57 radiation 40.0 10 < th dose dependent rect. 4 5
349 126.59 precipitation 0.1 270 < th dose independent rect. 2 20
350 126.59 precipitation 0.1 270 < th dose dependent rect. 2 20
353 126.62 wind 5.0 270 < th dose independent rect. 3 3
361 126.67 precipitation 0.1 270 < th dose independent rect. 4 1
362 126.67 precipitation 0.1 270 < th dose dependent rect. 4 1
366 126.70 temperature 10.0 270 > th dose independent rect. 22 4
367 126.70 temperature 30.0 270 < th dose independent rect. 22 4
368 126.70 humidity 50.0 270 > th dose independent rect. 22 4
371 126.70 atmosphere 995.0 270 > th dose independent rect. 22 4
372 126.70 radiation 1.0 270 < th dose independent rect. 22 4
378 126.70 wind 9.0 270 < th dose independent rect. 5 23
379 126.70 radiation 1.0 270 < th dose dependent rect. 22 4
385 126.71 wind 9.0 270 < th dose independent rect. 22 4
418 126.82 precipitation 0.1 270 < th dose independent rect. 17 14
419 126.82 atmosphere 1015.0 270 < th dose independent rect. 1 22
420 126.82 precipitation 0.1 270 < th dose dependent rect. 17 14
424 126.83 precipitation 0.1 270 < th dose independent rect. 22 4
425 126.83 precipitation 0.1 270 < th dose dependent rect. 22 4
427 126.84 wind 9.0 270 < th dose independent rect. 7 10
428 126.84 wind 9.0 270 < th dose independent rect. 1 22
501 126.98 radiation 40.0 270 < th dose dependent rect. 17 14
502 126.99 wind 9.0 270 < th dose dependent rect. 23 2
504 127.00 radiation 1.0 270 < th dose dependent rect. 4 1
505 127.00 wind 7.0 270 < th dose dependent rect. 3 3
511 127.02 temperature 15.0 270 > th dose independent rect. 5 23
514 127.04 radiation 20.0 270 < th dose independent rect. 2 7
530 127.10 atmosphere 1015.0 270 < th dose dependent rect. 4 1
541 127.14 radiation 10.0 270 < th dose independent rect. 2 20
542 127.14 radiation 20.0 270 < th dose dependent rect. 3 6
584 127.23 radiation 20.0 270 < th dose independent rect. 17 14
587 127.24 atmosphere 1015.0 270 < th dose independent rect. 23 2
594 127.26 radiation 1.0 270 < th dose independent rect. 4 1
605 127.28 temperature 10.0 270 > th dose independent rect. 4 1
607 127.28 temperature 30.0 270 < th dose independent rect. 4 1
608 127.28 humidity 50.0 270 > th dose independent rect. 4 1
611 127.28 atmosphere 995.0 270 > th dose independent rect. 4 1
612 127.28 atmosphere 1010.0 270 < th dose independent rect. 4 1
617 127.28 precipitation 0.1 270 < th dose independent rect. 7 10
619 127.28 precipitation 0.1 270 < th dose dependent rect. 7 10
638 127.30 temperature 10.0 270 > th dose independent rect. 7 10
639 127.30 atmosphere 1015.0 270 < th dose independent rect. 7 10
663 127.34 wind 9.0 270 < th dose independent rect. 17 14
698 127.43 wind 3.0 30 < th dose independent rect. 4 7
707 127.47 temperature 30.0 10 < th dose dependent rect. 24 4
713 127.51 wind 9.0 270 < th dose independent rect. 2 20
718 127.54 humidity 50.0 270 > th dose independent rect. 17 14
724 127.57 precipitation 0.1 270 < th dose independent rect. 3 3
725 127.57 precipitation 0.1 270 < th dose dependent rect. 3 3
768 127.68 wind 1.0 270 > th dose independent rect. 22 4
799 127.78 wind 9.0 10 < th dose dependent rect. 9 19
805 127.80 temperature 10.0 720 > th dose dependent rect. 19 3
810 127.81 humidity 50.0 270 > th dose dependent rect. 4 1
827 127.87 atmosphere 1015.0 10 < th dose independent rect. 9 19
898 128.04 atmosphere 995.0 270 > th dose independent rect. 17 14
928 128.10 radiation 10.0 270 < th dose independent rect. 3 4
951 128.16 temperature 30.0 270 < th dose dependent rect. 23 2
978 128.22 temperature 10.0 10 > th dose dependent rect. 9 19
979 128.22 wind 9.0 10 < th dose dependent rect. 4 20
980 128.23 radiation 1.0 90 > th dose independent rect. 4 3