BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0540000 Os08g0540000|AK070813
(344 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G59340.1 | chr3:21928971-21931030 REVERSE LENGTH=334 370 e-103
AT3G59310.2 | chr3:21922316-21924313 REVERSE LENGTH=364 361 e-100
AT3G59320.1 | chr3:21924705-21926840 REVERSE LENGTH=340 324 4e-89
AT3G59330.1 | chr3:21926984-21928332 REVERSE LENGTH=249 209 2e-54
AT3G07080.1 | chr3:2241360-2242934 FORWARD LENGTH=439 49 3e-06
>AT3G59340.1 | chr3:21928971-21931030 REVERSE LENGTH=334
Length = 333
Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust.
Identities = 174/289 (60%), Positives = 221/289 (76%)
Query: 22 RDVLLGLALGQFVSLLITSTGFSSSELARRGINAPTSQXXXXXXXXXXXXXXXXXXRRQP 81
+ L+GL LGQ +SLL TS F+SSELAR+GINAPTSQ RR
Sbjct: 14 KKTLIGLGLGQILSLLCTSNAFTSSELARKGINAPTSQTFLSYTLLAVVYGGIMLYRRPT 73
Query: 82 LTIKWYYYLILGIIDVEANYIVVKSYQYTSLTSVMLLDCWSIPCVIILTWIFLKTKYGLR 141
+ KWY+Y +L ++DVE N++VVK+ QYTS+TS+MLLDCW+IPCV++LTW+FLKTKY L
Sbjct: 74 IKGKWYHYFLLALVDVEGNFLVVKANQYTSITSIMLLDCWAIPCVLVLTWMFLKTKYRLM 133
Query: 142 KFIGVGVCVAGLILVVFSDVHASDRAKGPNPLKGDLLVIFGSMLYACSNVTEEYLVKKSN 201
K GV +C+AG+++V+FSDVHA RA G NP+KGD LV+ G+ LYA SN TEE+LVK ++
Sbjct: 134 KISGVFICIAGVVMVLFSDVHAGSRAGGSNPVKGDFLVLAGATLYAVSNTTEEFLVKNAD 193
Query: 202 RIELMAMLGLFGAIISGIQISILERKELHSIKWNAGAVLPFLGFALAMFLFYSTVPTVLK 261
+ELM +GLFGAIIS IQ++I E+ EL +I W+A AV PFL FA+ MFLFYS +P +L+
Sbjct: 194 TVELMTFMGLFGAIISAIQVAIFEQGELKAIHWSADAVFPFLRFAITMFLFYSLLPILLR 253
Query: 262 ICGATMLNLSLLTSDMWAVLIRIFAYHEKVDWIYFVAFAGTAAGLLIYS 310
G+TM LSLLTSDMWAVLIRIFAYHEKVDW+Y++AFA TA GL+IYS
Sbjct: 254 TNGSTMFTLSLLTSDMWAVLIRIFAYHEKVDWLYYLAFATTAIGLIIYS 302
>AT3G59310.2 | chr3:21922316-21924313 REVERSE LENGTH=364
Length = 363
Score = 361 bits (926), Expect = e-100, Method: Compositional matrix adjust.
Identities = 181/335 (54%), Positives = 217/335 (64%), Gaps = 34/335 (10%)
Query: 39 TSTGFSSSELARRGINAPTSQXXXXXXXXXXXXXXXXXXRRQPLTIKWYYYLILGIIDVE 98
TS GF+SSELAR+GIN PTSQ RR + KWYYY +L +DVE
Sbjct: 28 TSNGFTSSELARKGINVPTSQCFLNYVLLAIVYGSIMLYRRSDIKAKWYYYFLLAFVDVE 87
Query: 99 ANYIVVKSYQYTSLTSVMLLDCWSIPCVIILTWIFLKTKYGLRKFIGVGVCVAGLILVVF 158
AN++VVK+YQYTSLTSVMLLDCW+IPCV++LTW +LKTKY L K GV +C+ G+ +VVF
Sbjct: 88 ANFLVVKAYQYTSLTSVMLLDCWAIPCVLVLTWFYLKTKYRLMKISGVFICIVGVFMVVF 147
Query: 159 SDVHASDRAKGPNPLKGDLLVIFGSMLYACSNVTEEYLVKKSNRIELMAMLGLFGAIISG 218
SDVHA DRA G NP+KGD LV+ G+ LYA SN +EE+LVK ++ +ELM LG FGAIIS
Sbjct: 148 SDVHAGDRAGGSNPVKGDFLVLAGATLYAVSNTSEEFLVKNADTVELMTFLGFFGAIISA 207
Query: 219 IQISILERKELHSIKWNAGAV-------------------------------LPFLGFAL 247
IQ+SILER EL +I W+ GAV PFL F L
Sbjct: 208 IQVSILERDELKAIHWSTGAVGFLAMAISILTSANQRRHILVYLLHFSRFQVFPFLRFTL 267
Query: 248 AMFLFYSTVPTVLKICGATMLNLSLLTSDMWAVLIRIFAYHEKVDWIYFVAFAGTAAGLL 307
MFLFY VP +LK GATM NLSLLTSDMWAVLIR F YHEKVDW+YF+AFA TA GL+
Sbjct: 268 TMFLFYPLVPVLLKTNGATMFNLSLLTSDMWAVLIRTFGYHEKVDWLYFLAFATTATGLI 327
Query: 308 IYSYKSSKEAEETAQVAG---ASDKQGKAGDEEAG 339
IYS K + E + G A ++ D+E G
Sbjct: 328 IYSMKEKDQEEHRFEEVGDEAAMQRKLLGEDDEPG 362
>AT3G59320.1 | chr3:21924705-21926840 REVERSE LENGTH=340
Length = 339
Score = 324 bits (831), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 174/318 (54%), Positives = 230/318 (72%), Gaps = 2/318 (0%)
Query: 22 RDVLLGLALGQFVSLLITSTGFSSSELARRGINAPTSQXXXXXXXXXXXXXXXXXXRRQP 81
+ L+GL LGQ +SLL T +SE+AR+GI+APTSQ RR
Sbjct: 12 KKTLIGLGLGQIISLLSTLIASIASEIARKGISAPTSQTFLGYVSLAIVYGGIMLYRRSA 71
Query: 82 LTIKWYYYLILGIIDVEANYIVVKSYQYTSLTSVMLLDCWSIPCVIILTWIFLKTKYGLR 141
+ +KWY+Y +L ++DVEAN++VVK++Q TS+TS+MLLDCW+IPCV++LTW+FLKT+Y L
Sbjct: 72 IKVKWYHYFLLAVVDVEANFLVVKAFQNTSMTSIMLLDCWAIPCVLVLTWVFLKTRYRLM 131
Query: 142 KFIGVGVCVAGLILVVFSDVHASDRAKGPNPLKGDLLVIFGSMLYACSNVTEEYLVKKSN 201
K GV +C+ G+++VVFSDVHA DRA G NP+KGD LVI G+ LYA SNVTEE+LVK ++
Sbjct: 132 KISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATLYAVSNVTEEFLVKNAD 191
Query: 202 RIELMAMLGLFGAIISGIQISILERKELHSIKWNAGAVLPFLGFALAMFLFYSTVPTVLK 261
ELMA LGLFGAII+ IQISI ER + +I+W+ A+L ++G AL +FLFY+ + ++K
Sbjct: 192 VTELMAFLGLFGAIIAAIQISIFERGAVRAIQWSTEAILLYIGGALGLFLFYTLITILIK 251
Query: 262 ICGATMLNLSLLTSDMWAVLIRIFAYHEKVDWIYFVAFAGTAAGLLIYSYKSSKEAEETA 321
G+TM NLSLLTSDMWA+LIR F YHEKVDW+YF+AFA TA GL+IYS K E E+ +
Sbjct: 252 NNGSTMFNLSLLTSDMWAILIRTFGYHEKVDWLYFLAFATTATGLIIYSMKEKDEEEQRS 311
Query: 322 QVAGASDKQGKAGDEEAG 339
++ K DEE G
Sbjct: 312 --GEVVSERRKLFDEEDG 327
>AT3G59330.1 | chr3:21926984-21928332 REVERSE LENGTH=249
Length = 248
Score = 209 bits (532), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 117/233 (50%), Positives = 149/233 (63%), Gaps = 37/233 (15%)
Query: 18 RWMRRDVLLGLALGQFVSLLITSTGFSSSELARR-------------------------- 51
R + L+G LGQ +SLL TS F+SSE+AR+
Sbjct: 8 RIKTKKTLIGFGLGQILSLLSTSLSFTSSEIARKDFSFFFFSNHPIFKHSHELTKFEIFI 67
Query: 52 GINAPTSQXXXXXXXXXXXXXXXXXXRRQPLTIKWYYYLILGIIDVEANYIVVKSYQYTS 111
GINAPTSQ KWY+YL+L +DVEAN++VVK+YQ TS
Sbjct: 68 GINAPTSQSFLGYVLLAIVYGA-----------KWYHYLLLAFVDVEANFLVVKAYQNTS 116
Query: 112 LTSVMLLDCWSIPCVIILTWIFLKTKYGLRKFIGVGVCVAGLILVVFSDVHASDRAKGPN 171
+TSVMLLDCW+IPCV++ TW+FLKTKY L K GV +C G+++VVFSDVHA DRA G N
Sbjct: 117 MTSVMLLDCWAIPCVLVFTWVFLKTKYRLMKISGVVICNVGVVMVVFSDVHAGDRAGGSN 176
Query: 172 PLKGDLLVIFGSMLYACSNVTEEYLVKKSNRIELMAMLGLFGAIISGIQISIL 224
P+KGD LVI G+ LYA SNV++E+LVK ++R++LM++LGLFGAII IQISI
Sbjct: 177 PIKGDFLVIAGATLYAVSNVSQEFLVKNADRVQLMSLLGLFGAIIGAIQISIF 229
>AT3G07080.1 | chr3:2241360-2242934 FORWARD LENGTH=439
Length = 438
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 106 SYQYTSLTSVMLLDCWSIPCVIILTWIFLKTKYGLRKFIGVGVCVAGLILVVFSDVHASD 165
S +YT++TS +L S +++ IFL K+ K V +C++G I+V D +
Sbjct: 184 SLKYTTVTSNTILSSASSLFTFLVSLIFLGEKFTWLKLFSVLLCMSGTIIVSMGDSESKS 243
Query: 166 RAKGPNPLKGDLLVIFGSMLYACS-NVTEEYLV---KKSNRIELMAMLGLFG 213
A NPL GD+L + + LYA + + L +++ R+ + LG G
Sbjct: 244 NAVAKNPLLGDILSLVSAALYAVYITLIRKKLPDDDERNGRVSMAQFLGFLG 295
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.324 0.138 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 6,677,339
Number of extensions: 245351
Number of successful extensions: 749
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 744
Number of HSP's successfully gapped: 5
Length of query: 344
Length of database: 11,106,569
Length adjustment: 99
Effective length of query: 245
Effective length of database: 8,392,385
Effective search space: 2056134325
Effective search space used: 2056134325
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 112 (47.8 bits)