BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0307400 Os05g0307400|AK072444
(437 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0307400 Similar to Regulatory associated protein of mT... 841 0.0
Os12g0109900 Double-stranded RNA binding domain containing ... 645 0.0
Os11g0109900 Double-stranded RNA binding domain containing ... 634 0.0
Os12g0110000 Regulatory associated protein of TOR family pr... 135 4e-32
Os05g0150400 Double-stranded RNA binding domain containing ... 105 8e-23
Os08g0384100 Double-stranded RNA binding domain containing ... 94 2e-19
Os10g0480500 Double-stranded RNA binding domain containing ... 89 6e-18
>Os05g0307400 Similar to Regulatory associated protein of mTOR (Raptor) (P150
target of rapamycin (TOR)-scaffold protein)
Length = 437
Score = 841 bits (2172), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/437 (94%), Positives = 415/437 (94%)
Query: 1 MKKKSAPTPLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEG 60
MKKKSAPTPLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEG
Sbjct: 1 MKKKSAPTPLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEG 60
Query: 61 PSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGL 120
PSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGL
Sbjct: 61 PSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGL 120
Query: 121 CKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAART 180
CKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAART
Sbjct: 121 CKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAART 180
Query: 181 ALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETPXXXXXXXXXXXXXXXXXXXXX 240
ALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETP
Sbjct: 181 ALLAIQGQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKAKKGGFKKKWNKRKFMK 240
Query: 241 XDGQAVDVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEDEPPRDIE 300
DGQAVDVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEDEPPRDIE
Sbjct: 241 KDGQAVDVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEDEPPRDIE 300
Query: 301 MVQPDKENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISAKQEPSIDAATLQPKEE 360
MVQPDKENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISAKQEPSIDAATLQPKEE
Sbjct: 301 MVQPDKENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISAKQEPSIDAATLQPKEE 360
Query: 361 AMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHSQYERW 420
AMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHSQYERW
Sbjct: 361 AMKTGCVALVLCLNISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHSQYERW 420
Query: 421 QPKARYKLQLDPTLEEV 437
QPKARYKLQLDPTLEEV
Sbjct: 421 QPKARYKLQLDPTLEEV 437
>Os12g0109900 Double-stranded RNA binding domain containing protein
Length = 424
Score = 645 bits (1663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 323/355 (90%), Positives = 324/355 (91%)
Query: 7 PTPLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPV 66
PTPLPPETANTSPAP GATAGIRVENCYVFKSRLQEYAQK GLQTPEYHT KEGPSHEPV
Sbjct: 5 PTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPV 64
Query: 67 FKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ 126
FKSTVVINNTSY SLPGF NRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ
Sbjct: 65 FKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ 124
Query: 127 EYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
EYAQKMNYAIPSYICTK ASGLAPF+CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ
Sbjct: 125 EYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
Query: 187 GQSEGSANGATKYIVVPGKRVGKEVEKRPIETPXXXXXXXXXXXXXXXXXXXXXXDGQAV 246
GQSEGSANGATKYIVVPGKRVGKEVEKRPIETP DGQAV
Sbjct: 185 GQSEGSANGATKYIVVPGKRVGKEVEKRPIETPKPLKVKKGGFKKKWNKRKFMKKDGQAV 244
Query: 247 DVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEDEPPRDIEMVQPDK 306
DVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVE EPPRDIEMVQPDK
Sbjct: 245 DVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMVQPDK 304
Query: 307 ENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISAKQEPSIDAATLQPKEEA 361
ENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAIS KQEPSIDAA LQPKEEA
Sbjct: 305 ENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISGKQEPSIDAAILQPKEEA 359
>Os11g0109900 Double-stranded RNA binding domain containing protein
Length = 473
Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 321/355 (90%), Positives = 322/355 (90%), Gaps = 1/355 (0%)
Query: 7 PTPLPPETANTSPAPIGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPV 66
PTPLPPETANTSPAP GATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHT KEGPSHEPV
Sbjct: 5 PTPLPPETANTSPAPNGATAGIRVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPV 64
Query: 67 FKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ 126
FKSTVVINNTSY SLPGF NRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ
Sbjct: 65 FKSTVVINNTSYDSLPGFFNRKAAEQSAAEVALMEIVKSIPANANIPAVQETGLCKNLLQ 124
Query: 127 EYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
EYAQKMNYAIPSYICTK ASGLAPF+CTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ
Sbjct: 125 EYAQKMNYAIPSYICTKSASGLAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 184
Query: 187 GQSEGSANGATKYIVVPGKRVGKEVEKRPIETPXXXXXXXXXXXXXXXXXXXXXXDGQAV 246
GQSEGSANGATKYIVVPGKRVGKEVEK PIETP DGQAV
Sbjct: 185 GQSEGSANGATKYIVVPGKRVGKEVEKMPIETPKPLKIKKGGFKKKWNKRKFMKKDGQAV 244
Query: 247 DVEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEDEPPRDIEMVQPDK 306
VEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVE EPPRDIEMVQPDK
Sbjct: 245 -VEKDEARVAGDAHDSDVLMQPTVITQEASCGTLFLQPCEEAKRVEAEPPRDIEMVQPDK 303
Query: 307 ENQHSDAALVQPDDEARVEQEPSRDISVVQPNEEAISAKQEPSIDAATLQPKEEA 361
ENQHSDAALVQPDDEARVEQEPSRDISVV PNEEAIS KQEPSIDAA LQPKEEA
Sbjct: 304 ENQHSDAALVQPDDEARVEQEPSRDISVVPPNEEAISVKQEPSIDAAILQPKEEA 358
>Os12g0110000 Regulatory associated protein of TOR family protein
Length = 1242
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 61/63 (96%), Positives = 61/63 (96%)
Query: 375 ISVDPPDVIKISPCVRKECWIDPFSMAAPKALETIGKTLHSQYERWQPKARYKLQLDPTL 434
ISVDPPDVIKISPC RKECWIDPFSMA PKALETIGKTLHSQYERWQPKARYKLQLDPTL
Sbjct: 1 ISVDPPDVIKISPCARKECWIDPFSMAPPKALETIGKTLHSQYERWQPKARYKLQLDPTL 60
Query: 435 EEV 437
EEV
Sbjct: 61 EEV 63
>Os05g0150400 Double-stranded RNA binding domain containing protein
Length = 593
Score = 105 bits (261), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 62/150 (41%), Positives = 87/150 (58%), Gaps = 4/150 (2%)
Query: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGF-SNRKAAEQS 93
++K++LQE AQ++ P Y +EGP H P FK+TV N ++ S P F S + AE +
Sbjct: 1 MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFES-PAFCSTLRLAEHA 59
Query: 94 AAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP-F 151
AAEVAL E+ K P+++ V ETG+ KNLLQE A + +P Y + G P F
Sbjct: 60 AAEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVF 119
Query: 152 LCTVEIGGIQYIGAAARTKKDAEIKAARTA 181
CTVE+ G+ + G +TKK A+ AA A
Sbjct: 120 TCTVELAGMTFTGNPGKTKKQAQKNAAMAA 149
>Os08g0384100 Double-stranded RNA binding domain containing protein
Length = 312
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 58/155 (37%), Positives = 85/155 (54%), Gaps = 5/155 (3%)
Query: 36 FKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAA 95
+KS+LQEY Q+A Q P Y T +G H+ FKSTV+++ + S K AEQ AA
Sbjct: 39 YKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSSTFCHRRVKDAEQDAA 98
Query: 96 EVA---LMEIVKSIPANANIPAV--QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP 150
+VA L+E ++ + ++ + Q+ K++L EY K P Y TK + P
Sbjct: 99 KVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTEGSVTP 158
Query: 151 FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAI 185
++ +V G Y G AAR KKDAE KAAR A+ ++
Sbjct: 159 YVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSL 193
>Os10g0480500 Double-stranded RNA binding domain containing protein
Length = 514
Score = 89.0 bits (219), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/156 (39%), Positives = 89/156 (57%), Gaps = 6/156 (3%)
Query: 35 VFKSRLQEYAQKAGLQTPEYHTSKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSA 94
++K++LQE AQ++ P Y +EGP H P FK+ V N + S F+ + AE +A
Sbjct: 1 MYKNQLQELAQRSCFNLPAYTCLREGPDHAPRFKAAVNFNGEQFESPGFFTTLRQAEHAA 60
Query: 95 AEVALMEIVKSIPAN---ANIPAVQETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAP- 150
AEVAL + + P+ A I + ETG+ KNLLQE AQ++ +PSY + G P
Sbjct: 61 AEVALAALARRGPSYSLAARI--LDETGVYKNLLQEVAQRVGAPLPSYTTERSGLGHLPV 118
Query: 151 FLCTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQ 186
F CTVE+ GI + G A+ KK AE AA A +++
Sbjct: 119 FTCTVELAGITFTGDPAKNKKQAEKNAASAAWSSLR 154
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.311 0.128 0.367
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 14,565,521
Number of extensions: 594041
Number of successful extensions: 1872
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1837
Number of HSP's successfully gapped: 7
Length of query: 437
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 333
Effective length of database: 11,605,545
Effective search space: 3864646485
Effective search space used: 3864646485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 157 (65.1 bits)