BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0244600 Os05g0244600|AK073979
(175 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0244600 Nucleic acid-binding, OB-fold domain containin... 264 2e-71
Os01g0238600 Nucleic acid-binding, OB-fold domain containin... 198 2e-51
Os01g0754100 Nucleic acid-binding, OB-fold domain containin... 178 1e-45
Os05g0100800 Nucleic acid-binding, OB-fold domain containin... 151 2e-37
Os06g0103400 Nucleic acid-binding, OB-fold domain containin... 140 5e-34
>Os05g0244600 Nucleic acid-binding, OB-fold domain containing protein
Length = 175
Score = 264 bits (675), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/175 (78%), Positives = 137/175 (78%)
Query: 1 PPAKSPVLGFXXXXXXXXXXXXXXXXXGAAMATAAKGGEKPALRKPVFVKVDQLKPGTCG 60
PPAKSPVLGF GAAMATAAKGGEKPALRKPVFVKVDQLKPGTCG
Sbjct: 1 PPAKSPVLGFPQPPPLLPTQPALRQRRGAAMATAAKGGEKPALRKPVFVKVDQLKPGTCG 60
Query: 61 HTLTVKVVSANXXXXXXXXXXXXXXXXXXXXXIAECLVGDETGVIVFTARNEQVDMLMPG 120
HTLTVKVVSAN IAECLVGDETGVIVFTARNEQVDMLMPG
Sbjct: 61 HTLTVKVVSANPVPARGRAGGGGPAVGSRPARIAECLVGDETGVIVFTARNEQVDMLMPG 120
Query: 121 NTAILRNARIDMFKGSMRLAVDKWGRVEVTEPASFAVKEDNNLSLVEYELVNVPE 175
NTAILRNARIDMFKGSMRLAVDKWGRVEVTEPASFAVKEDNNLSLVEYELVNVPE
Sbjct: 121 NTAILRNARIDMFKGSMRLAVDKWGRVEVTEPASFAVKEDNNLSLVEYELVNVPE 175
>Os01g0238600 Nucleic acid-binding, OB-fold domain containing protein
Length = 141
Score = 198 bits (503), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/145 (71%), Positives = 110/145 (75%), Gaps = 4/145 (2%)
Query: 31 MATAAKGGEKPALRKPVFVKVDQLKPGTCGHTLTVKVVSANXXXXXXXXXXXXXXXXXXX 90
M+T A GEKPALRKPVF KVDQLKP T GHTLTVKVVSA
Sbjct: 1 MSTPA-AGEKPALRKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAPSRPPR- 58
Query: 91 XXIAECLVGDETGVIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVT 150
IAECL+GDETG IVFTARNEQVD+L PG T I+RNA+IDMFKGSMRLAVDKWGR+E T
Sbjct: 59 --IAECLIGDETGAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEAT 116
Query: 151 EPASFAVKEDNNLSLVEYELVNVPE 175
EPASF VKEDNNLSLVEYELVNV E
Sbjct: 117 EPASFTVKEDNNLSLVEYELVNVTE 141
>Os01g0754100 Nucleic acid-binding, OB-fold domain containing protein
Length = 140
Score = 178 bits (452), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 89/130 (68%), Positives = 99/130 (76%), Gaps = 1/130 (0%)
Query: 44 RKPVFVKVDQLKPGTCGHTLTVKVVSANXXXXXXXXXXXXXXXXXXXXXIAECLVGDETG 103
RKPVFVKVDQLKPGT GHTL KV+S+ IAECL+GDETG
Sbjct: 10 RKPVFVKVDQLKPGTGGHTLVAKVLSSKTVVQKGRAAAGAGPAARPTR-IAECLIGDETG 68
Query: 104 VIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVTEPASFAVKEDNNL 163
I+FTARNEQVD++ +T I+RNA+IDMFKGSMRLAVDKWGR+EVTEPASF VKEDNNL
Sbjct: 69 CILFTARNEQVDLMKADSTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFNVKEDNNL 128
Query: 164 SLVEYELVNV 173
SLVEYELVNV
Sbjct: 129 SLVEYELVNV 138
>Os05g0100800 Nucleic acid-binding, OB-fold domain containing protein
Length = 134
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 79/135 (58%), Positives = 93/135 (68%), Gaps = 7/135 (5%)
Query: 42 ALRKPVFVKVDQLKPGTCGHTLTVKVVSANXXXXXXXXXXXXXXXXXXXXXIAECLVGDE 101
A R+P F KVDQL+PGT GH L +KVV + IAECLVGDE
Sbjct: 6 ARRQPSFTKVDQLRPGTHGHNLLLKVVDSKMVLQRGGGPQGRHMR------IAECLVGDE 59
Query: 102 TGVIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVTE-PASFAVKED 160
TG+IVFTARN+QVD++ G + LRNA+IDMFKGSMRLAVDKWG V+ E PA F VKED
Sbjct: 60 TGIIVFTARNDQVDVMKAGASVDLRNAKIDMFKGSMRLAVDKWGIVKAAESPADFTVKED 119
Query: 161 NNLSLVEYELVNVPE 175
NN+SL+E+ELV V E
Sbjct: 120 NNMSLIEFELVTVVE 134
>Os06g0103400 Nucleic acid-binding, OB-fold domain containing protein
Length = 111
Score = 140 bits (353), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 69/113 (61%), Positives = 83/113 (73%), Gaps = 10/113 (8%)
Query: 61 HTLTVKVVSANXXXXXXXXXXXXXXXXXXXXXIAECLVGDETGVIVFTARNEQVDMLMPG 120
HTLT +V+SA +AECLVGD TG ++FTARN+QVD++ PG
Sbjct: 5 HTLTARVLSARIILDNPPPRAR----------LAECLVGDNTGTVLFTARNQQVDLVKPG 54
Query: 121 NTAILRNARIDMFKGSMRLAVDKWGRVEVTEPASFAVKEDNNLSLVEYELVNV 173
T I RNA+IDMFKG+MRLAVDKWGR+EVT+PASF VKEDNN+SLVEYELV+V
Sbjct: 55 TTVIFRNAKIDMFKGTMRLAVDKWGRIEVTDPASFQVKEDNNVSLVEYELVDV 107
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,296,793
Number of extensions: 122379
Number of successful extensions: 266
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 260
Number of HSP's successfully gapped: 5
Length of query: 175
Length of database: 17,035,801
Length adjustment: 94
Effective length of query: 81
Effective length of database: 12,127,685
Effective search space: 982342485
Effective search space used: 982342485
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 152 (63.2 bits)