Os01g0754100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0754100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 53.4 | 0.343 | 10.1 | 0.335 | 1.41 | 0.537 | 1.18 | -1.3 | -0.109 | 20.4 | 16.58 | 19 | -- | -- |
| 58.2 | 0.355 | 10.1 | 0.319 | 1.41 | 0.51 | 0.0437 | -- | -0.113 | 20.4 | 12.7 | 14 | -- | -- |
| 55.79 | 0.348 | 10.1 | 0.314 | 1.44 | 0.503 | -- | -0.737 | -0.113 | 20.5 | 20.35 | 18 | -- | -- |
| 58.14 | 0.355 | 10.1 | 0.321 | 1.41 | 0.499 | -- | -- | -0.123 | 20.5 | 12.41 | 10 | -- | -- |
| 119.51 | 0.509 | 10.1 | 0.3 | -- | 1.16 | -- | -0.633 | -0.0833 | -- | 7.05 | 8 | -- | -- |
| 61.95 | 0.369 | 10.2 | 0.31 | 1.81 | -- | -0.197 | -- | -0.138 | 21.4 | -- | -- | -- | -- |
| 62.09 | 0.369 | 10.1 | 0.318 | 1.81 | -- | -- | -- | -0.137 | 21.4 | -- | -- | -- | -- |
| 120.22 | 0.511 | 10.1 | 0.304 | -- | 1.15 | -- | -- | -0.106 | -- | 6.66 | 6 | -- | -- |
| 60.83 | 0.363 | 10.1 | -- | 1.4 | 0.499 | -- | -- | -0.157 | 20.5 | 11.55 | 10 | -- | -- |
| 253.72 | 0.744 | 10.1 | 0.328 | -- | -- | -- | -- | -0.144 | -- | -- | -- | -- | -- |
| 64.75 | 0.376 | 10.2 | -- | 1.81 | -- | -- | -- | -0.173 | 21.4 | -- | -- | -- | -- |
| 121.83 | 0.514 | 10.1 | -- | -- | 1.16 | -- | -- | -0.145 | -- | 6.42 | 4 | -- | -- |
| 256.56 | 0.748 | 10.1 | -- | -- | -- | -- | -- | -0.18 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 52.17 | radiation | 10 | 90 | < th | dose dependent | rect. | 5 | 23 |
| 2 | 52.36 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 7 |
| 8 | 52.47 | humidity | 80 | 1440 | < th | dose independent | rect. | 6 | 4 |
| 16 | 52.76 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 8 |
| 23 | 52.87 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 2 |
| 29 | 52.95 | humidity | 70 | 1440 | > th | dose independent | rect. | 19 | 17 |
| 31 | 52.99 | temperature | 25 | 720 | > th | dose dependent | rect. | 20 | 1 |
| 33 | 53.00 | humidity | 80 | 1440 | < th | dose dependent | rect. | 6 | 4 |
| 43 | 53.09 | humidity | 70 | 1440 | < th | dose independent | rect. | 18 | 18 |
| 52 | 53.18 | humidity | 80 | 1440 | > th | dose independent | rect. | 6 | 4 |
| 61 | 53.22 | humidity | 70 | 1440 | > th | dose independent | sin | 8 | NA |
| 89 | 53.37 | humidity | 70 | 1440 | < th | dose independent | sin | 9 | NA |
| 95 | 53.39 | humidity | 80 | 1440 | < th | dose dependent | rect. | 20 | 16 |
| 97 | 53.40 | radiation | 20 | 10 | < th | dose dependent | rect. | 12 | 23 |
| 98 | 53.41 | radiation | 20 | 90 | < th | dose dependent | rect. | 11 | 23 |
| 142 | 53.58 | humidity | 80 | 1440 | < th | dose dependent | sin | 7 | NA |
| 144 | 53.59 | wind | 1 | 270 | < th | dose independent | rect. | 3 | 2 |
| 174 | 53.63 | radiation | 10 | 90 | < th | dose dependent | rect. | 19 | 23 |
| 185 | 53.65 | humidity | 90 | 720 | < th | dose dependent | rect. | 20 | 1 |
| 187 | 53.65 | radiation | 20 | 30 | < th | dose dependent | rect. | 1 | 23 |
| 193 | 53.69 | radiation | 30 | 30 | < th | dose dependent | sin | 5 | NA |
| 200 | 53.72 | humidity | 80 | 1440 | < th | dose independent | sin | 5 | NA |
| 208 | 53.75 | radiation | 20 | 10 | < th | dose dependent | no | NA | NA |
| 225 | 53.79 | radiation | 20 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 236 | 53.83 | humidity | 60 | 1440 | > th | dose dependent | rect. | 5 | 8 |
| 261 | 53.89 | humidity | 70 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 280 | 53.92 | radiation | 20 | 4320 | > th | dose dependent | rect. | 7 | 1 |
| 312 | 53.95 | radiation | 20 | 30 | < th | dose dependent | rect. | 9 | 23 |
| 320 | 53.98 | humidity | 70 | 1440 | > th | dose independent | rect. | 9 | 1 |
| 361 | 54.09 | radiation | 10 | 90 | < th | dose dependent | rect. | 21 | 23 |
| 362 | 54.10 | temperature | 20 | 720 | < th | dose independent | rect. | 5 | 2 |
| 364 | 54.11 | humidity | 80 | 1440 | > th | dose independent | sin | 4 | NA |
| 398 | 54.20 | radiation | 20 | 4320 | > th | dose independent | rect. | 7 | 1 |
| 417 | 54.21 | radiation | 20 | 30 | < th | dose dependent | rect. | 23 | 23 |
| 435 | 54.26 | wind | 7 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 438 | 54.27 | wind | 1 | 43200 | > th | dose dependent | rect. | 24 | 4 |
| 441 | 54.27 | radiation | 30 | 30 | < th | dose dependent | rect. | 1 | 13 |
| 463 | 54.30 | humidity | 90 | 720 | < th | dose independent | rect. | 20 | 3 |
| 467 | 54.30 | humidity | 60 | 10 | > th | dose dependent | rect. | 12 | 23 |
| 473 | 54.31 | humidity | 50 | 90 | > th | dose dependent | rect. | 12 | 23 |
| 578 | 54.49 | wind | 5 | 43200 | < th | dose dependent | rect. | 2 | 1 |
| 592 | 54.51 | wind | 5 | 43200 | < th | dose dependent | rect. | 23 | 6 |
| 597 | 54.51 | radiation | 20 | 90 | < th | dose dependent | rect. | 7 | 23 |
| 602 | 54.52 | radiation | 30 | 10 | < th | dose dependent | rect. | 1 | 10 |
| 612 | 54.53 | radiation | 10 | 270 | < th | dose dependent | rect. | 21 | 21 |
| 613 | 54.54 | humidity | 60 | 14400 | > th | dose independent | rect. | 21 | 11 |
| 616 | 54.54 | wind | 1 | 43200 | > th | dose dependent | rect. | 23 | 6 |
| 620 | 54.55 | radiation | 10 | 90 | > th | dose independent | rect. | 17 | 23 |
| 628 | 54.56 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 10 |
| 644 | 54.58 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 18 |
| 684 | 54.64 | radiation | 20 | 10 | < th | dose independent | rect. | 1 | 14 |
| 694 | 54.64 | radiation | 20 | 30 | < th | dose dependent | rect. | 17 | 23 |
| 714 | 54.68 | humidity | 70 | 10 | > th | dose independent | sin | 6 | NA |
| 719 | 54.69 | radiation | 10 | 90 | > th | dose independent | rect. | 6 | 10 |
| 740 | 54.70 | radiation | 10 | 90 | > th | dose independent | rect. | 13 | 23 |
| 757 | 54.71 | radiation | 10 | 30 | > th | dose independent | rect. | 9 | 23 |
| 770 | 54.73 | radiation | 10 | 90 | > th | dose independent | sin | 2 | NA |
| 771 | 54.73 | temperature | 20 | 720 | < th | dose independent | rect. | 3 | 4 |
| 772 | 54.73 | humidity | 70 | 30 | > th | dose independent | rect. | 1 | 13 |
| 779 | 54.73 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 16 |
| 813 | 54.77 | humidity | 90 | 10 | < th | dose dependent | rect. | 7 | 14 |
| 816 | 54.78 | radiation | 20 | 10 | < th | dose independent | sin | 6 | NA |
| 819 | 54.78 | humidity | 90 | 30 | < th | dose dependent | rect. | 7 | 12 |
| 827 | 54.79 | radiation | 20 | 10 | < th | dose dependent | rect. | 7 | 23 |
| 897 | 54.89 | humidity | 70 | 30 | > th | dose independent | rect. | 1 | 16 |
| 927 | 54.92 | radiation | 30 | 4320 | < th | dose independent | rect. | 7 | 1 |
| 929 | 54.92 | humidity | 50 | 10 | > th | dose dependent | sin | 5 | NA |
| 931 | 54.92 | wind | 1 | 43200 | > th | dose dependent | rect. | 2 | 1 |
| 936 | 54.92 | radiation | 1 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 940 | 54.93 | temperature | 25 | 720 | > th | dose independent | rect. | 20 | 1 |
| 966 | 54.95 | radiation | 20 | 90 | < th | dose dependent | rect. | 1 | 16 |
| 991 | 54.98 | temperature | 15 | 720 | > th | dose dependent | rect. | 20 | 1 |