Os01g0238600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os01g0238600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 8.55 | 0.137 | 12.9 | 0.293 | 0.37 | 0.583 | -0.405 | 0.0106 | 0.0342 | 19.4 | 18.9 | 7248 | -- | -- |
| 8.55 | 0.136 | 12.9 | 0.292 | 0.37 | 0.58 | -0.405 | -- | 0.0342 | 19.4 | 18.9 | 7248 | -- | -- |
| 8.99 | 0.14 | 12.9 | 0.303 | 0.368 | 0.586 | -- | 0.0255 | 0.0346 | 19.4 | 18.98 | 7295 | -- | -- |
| 8.98 | 0.14 | 12.9 | 0.315 | 0.368 | 0.58 | -- | -- | 0.0387 | 19.3 | 18.7 | 6830 | -- | -- |
| 16.06 | 0.187 | 12.8 | 0.297 | -- | 0.571 | -- | -0.0252 | 0.028 | -- | 18.8 | 7890 | -- | -- |
| 12.71 | 0.167 | 12.8 | 0.67 | 0.368 | -- | -0.378 | -- | 0.173 | 19.5 | -- | -- | -- | -- |
| 13.1 | 0.17 | 12.8 | 0.679 | 0.368 | -- | -- | -- | 0.172 | 19.4 | -- | -- | -- | -- |
| 16.04 | 0.187 | 12.8 | 0.304 | -- | 0.585 | -- | -- | 0.0311 | -- | 19 | 6568 | -- | -- |
| 9.69 | 0.145 | 12.9 | -- | 0.348 | 0.707 | -- | -- | 0.00415 | 19.3 | 17.8 | 36329 | -- | -- |
| 20.34 | 0.211 | 12.8 | 0.673 | -- | -- | -- | -- | 0.166 | -- | -- | -- | -- | -- |
| 25.24 | 0.235 | 12.8 | -- | 0.362 | -- | -- | -- | 0.0967 | 19.6 | -- | -- | -- | -- |
| 16.55 | 0.19 | 12.9 | -- | -- | 0.703 | -- | -- | -0.0444 | -- | 17.21 | 41077 | -- | -- |
| 32.28 | 0.265 | 12.8 | -- | -- | -- | -- | -- | 0.0917 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 8.74 | temperature | 15 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 4 | 8.76 | temperature | 25 | 4320 | < th | dose dependent | rect. | 18 | 1 |
| 13 | 8.76 | temperature | 25 | 4320 | < th | dose dependent | rect. | 17 | 5 |
| 59 | 8.78 | temperature | 25 | 4320 | < th | dose dependent | rect. | 16 | 9 |
| 67 | 8.79 | temperature | 15 | 43200 | > th | dose dependent | sin | 0 | NA |
| 74 | 8.79 | temperature | 30 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 116 | 8.79 | temperature | 25 | 4320 | < th | dose dependent | rect. | 15 | 14 |
| 128 | 8.80 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 12 |
| 129 | 8.80 | temperature | 15 | 43200 | > th | dose dependent | sin | 21 | NA |
| 134 | 8.80 | temperature | 25 | 4320 | < th | dose dependent | sin | 14 | NA |
| 308 | 8.81 | wind | 5 | 43200 | > th | dose independent | rect. | 14 | 12 |
| 314 | 8.81 | temperature | 15 | 43200 | > th | dose dependent | sin | 18 | NA |
| 317 | 8.81 | temperature | 15 | 43200 | > th | dose dependent | no | NA | NA |
| 323 | 8.81 | temperature | 15 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 398 | 8.81 | temperature | 15 | 43200 | > th | dose dependent | rect. | 19 | 15 |
| 429 | 8.81 | temperature | 15 | 43200 | > th | dose dependent | rect. | 13 | 20 |
| 474 | 8.82 | wind | 5 | 43200 | < th | dose independent | rect. | 14 | 10 |
| 480 | 8.82 | temperature | 15 | 43200 | > th | dose dependent | sin | 14 | NA |
| 496 | 8.82 | temperature | 25 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 665 | 8.83 | wind | 5 | 43200 | < th | dose independent | sin | 16 | NA |
| 700 | 8.83 | temperature | 30 | 43200 | < th | dose dependent | rect. | 23 | 1 |
| 994 | 8.84 | wind | 5 | 43200 | > th | dose independent | sin | 16 | NA |