BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0238600 Os01g0238600|AK073776
         (141 letters)

Database: rap3 
           52,214 sequences; 17,035,801 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Os01g0238600  Nucleic acid-binding, OB-fold domain containin...   286   4e-78
Os05g0244600  Nucleic acid-binding, OB-fold domain containin...   213   4e-56
Os01g0754100  Nucleic acid-binding, OB-fold domain containin...   189   7e-49
Os05g0100800  Nucleic acid-binding, OB-fold domain containin...   173   4e-44
Os06g0103400  Nucleic acid-binding, OB-fold domain containin...   154   2e-38

>Os01g0238600 Nucleic acid-binding, OB-fold domain containing protein
          Length = 141

 Score =  286 bits (731), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MSTPAAGEKPALRKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAPSRPPRIA 60
           MSTPAAGEKPALRKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAPSRPPRIA
Sbjct: 1   MSTPAAGEKPALRKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAPSRPPRIA 60

Query: 61  ECLIGDETGAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATEPAS 120
           ECLIGDETGAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATEPAS
Sbjct: 61  ECLIGDETGAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATEPAS 120

Query: 121 FTVKEDNNLSLVEYELVNVTE 141
           FTVKEDNNLSLVEYELVNVTE
Sbjct: 121 FTVKEDNNLSLVEYELVNVTE 141



>Os05g0244600 Nucleic acid-binding, OB-fold domain containing protein
          Length = 175

 Score =  213 bits (542), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 115/145 (79%), Positives = 121/145 (83%), Gaps = 4/145 (2%)

Query: 1   MSTPA-AGEKPALRKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAP---SRP 56
           M+T A  GEKPALRKPVF KVDQLKP T GHTLTVKVVSA PVP R R G   P   SRP
Sbjct: 31  MATAAKGGEKPALRKPVFVKVDQLKPGTCGHTLTVKVVSANPVPARGRAGGGGPAVGSRP 90

Query: 57  PRIAECLIGDETGAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEAT 116
            RIAECL+GDETG IVFTARNEQVD+L PG T I+RNA+IDMFKGSMRLAVDKWGR+E T
Sbjct: 91  ARIAECLVGDETGVIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVT 150

Query: 117 EPASFTVKEDNNLSLVEYELVNVTE 141
           EPASF VKEDNNLSLVEYELVNV E
Sbjct: 151 EPASFAVKEDNNLSLVEYELVNVPE 175



>Os01g0754100 Nucleic acid-binding, OB-fold domain containing protein
          Length = 140

 Score =  189 bits (479), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/129 (74%), Positives = 103/129 (79%), Gaps = 2/129 (1%)

Query: 13  RKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAPSRP--PRIAECLIGDETGA 70
           RKPVF KVDQLKP T GHTL  KV+S+  V  + R    A       RIAECLIGDETG 
Sbjct: 10  RKPVFVKVDQLKPGTGGHTLVAKVLSSKTVVQKGRAAAGAGPAARPTRIAECLIGDETGC 69

Query: 71  IVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATEPASFTVKEDNNLS 130
           I+FTARNEQVDL+K  +TVI+RNAKIDMFKGSMRLAVDKWGRIE TEPASF VKEDNNLS
Sbjct: 70  ILFTARNEQVDLMKADSTVIIRNAKIDMFKGSMRLAVDKWGRIEVTEPASFNVKEDNNLS 129

Query: 131 LVEYELVNV 139
           LVEYELVNV
Sbjct: 130 LVEYELVNV 138



>Os05g0100800 Nucleic acid-binding, OB-fold domain containing protein
          Length = 134

 Score =  173 bits (438), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 87/135 (64%), Positives = 103/135 (76%), Gaps = 4/135 (2%)

Query: 8   EKPALRKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAPSRPPRIAECLIGDE 67
           +  A R+P FTKVDQL+P T GH L +KVV +  V  R   G     R  RIAECL+GDE
Sbjct: 3   DSGARRQPSFTKVDQLRPGTHGHNLLLKVVDSKMVLQR---GGGPQGRHMRIAECLVGDE 59

Query: 68  TGAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATE-PASFTVKED 126
           TG IVFTARN+QVD++K GA+V +RNAKIDMFKGSMRLAVDKWG ++A E PA FTVKED
Sbjct: 60  TGIIVFTARNDQVDVMKAGASVDLRNAKIDMFKGSMRLAVDKWGIVKAAESPADFTVKED 119

Query: 127 NNLSLVEYELVNVTE 141
           NN+SL+E+ELV V E
Sbjct: 120 NNMSLIEFELVTVVE 134



>Os06g0103400 Nucleic acid-binding, OB-fold domain containing protein
          Length = 111

 Score =  154 bits (389), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 7/112 (6%)

Query: 30  HTLTVKVVSATPVPGRARPGVAAPSRPPRIAECLIGDETGAIVFTARNEQVDLLKPGATV 89
           HTLT +V+SA       R  +  P    R+AECL+GD TG ++FTARN+QVDL+KPG TV
Sbjct: 5   HTLTARVLSA-------RIILDNPPPRARLAECLVGDNTGTVLFTARNQQVDLVKPGTTV 57

Query: 90  IMRNAKIDMFKGSMRLAVDKWGRIEATEPASFTVKEDNNLSLVEYELVNVTE 141
           I RNAKIDMFKG+MRLAVDKWGRIE T+PASF VKEDNN+SLVEYELV+V +
Sbjct: 58  IFRNAKIDMFKGTMRLAVDKWGRIEVTDPASFQVKEDNNVSLVEYELVDVVD 109



  Database: rap3
    Posted date:  Nov 19, 2010  6:03 PM
  Number of letters in database: 17,035,801
  Number of sequences in database:  52,214
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,921,642
Number of extensions: 198730
Number of successful extensions: 863
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 859
Number of HSP's successfully gapped: 5
Length of query: 141
Length of database: 17,035,801
Length adjustment: 91
Effective length of query: 50
Effective length of database: 12,284,327
Effective search space: 614216350
Effective search space used: 614216350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 151 (62.8 bits)