Os05g0244600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os05g0244600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 50.51 | 0.334 | 11.3 | -1.84 | 0.759 | 1.64 | 0.371 | -0.484 | -0.508 | 16 | 9.065 | 4620 | -- | -- |
| 50.75 | 0.332 | 11.3 | -1.76 | 0.782 | 1.71 | 0.389 | -- | -0.495 | 15.7 | 10.48 | 5148 | -- | -- |
| 50.9 | 0.332 | 11.3 | -1.84 | 0.764 | 1.64 | -- | -0.487 | -0.505 | 16 | 9.276 | 4602 | -- | -- |
| 51.13 | 0.333 | 11.3 | -1.72 | 0.761 | 1.65 | -- | -- | -0.474 | 16 | 10.02 | 4599 | -- | -- |
| 61.17 | 0.366 | 11.3 | -1.41 | -- | 2.18 | -- | -0.25 | -0.47 | -- | 12.94 | 1831 | -- | -- |
| 99.68 | 0.468 | 11.2 | -0.955 | 0.736 | -- | 0.381 | -- | -0.153 | 16.1 | -- | -- | -- | -- |
| 100.1 | 0.469 | 11.2 | -0.951 | 0.738 | -- | -- | -- | -0.151 | 16.1 | -- | -- | -- | -- |
| 54.19 | 0.343 | 11.2 | -1.43 | -- | 2.16 | -- | -- | -0.469 | -- | 15.54 | 185 | -- | -- |
| 99.05 | 0.466 | 11.2 | -- | 0.389 | 1.22 | -- | -- | -0.221 | 18.1 | 21.2 | 1588 | -- | -- |
| 129.66 | 0.532 | 11.2 | -0.981 | -- | -- | -- | -- | -0.17 | -- | -- | -- | -- | -- |
| 123.94 | 0.521 | 11.2 | -- | 0.756 | -- | -- | -- | -0.0449 | 16.1 | -- | -- | -- | -- |
| 101.66 | 0.47 | 11.2 | -- | -- | 1.46 | -- | -- | -0.26 | -- | 19.9 | 149 | -- | -- |
| 155.05 | 0.581 | 11.2 | -- | -- | -- | -- | -- | -0.0616 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 46.73 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 11 |
| 7 | 48.02 | wind | 9 | 43200 | > th | dose dependent | rect. | 19 | 5 |
| 17 | 48.93 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 10 |
| 19 | 48.94 | temperature | 30 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 21 | 49.28 | temperature | 30 | 4320 | < th | dose dependent | rect. | 17 | 9 |
| 22 | 49.30 | temperature | 10 | 4320 | > th | dose dependent | rect. | 17 | 9 |
| 25 | 49.35 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 5 |
| 65 | 49.62 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 10 |
| 89 | 49.72 | wind | 9 | 43200 | > th | dose dependent | rect. | 17 | 13 |
| 91 | 49.73 | temperature | 30 | 4320 | < th | dose dependent | rect. | 21 | 1 |
| 98 | 49.76 | temperature | 10 | 4320 | > th | dose dependent | sin | 14 | NA |
| 99 | 49.76 | temperature | 10 | 4320 | > th | dose dependent | rect. | 21 | 1 |
| 123 | 49.84 | temperature | 15 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 140 | 49.87 | temperature | 30 | 4320 | < th | dose dependent | rect. | 23 | 1 |
| 150 | 49.88 | temperature | 30 | 4320 | < th | dose dependent | sin | 13 | NA |
| 156 | 49.89 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 1 |
| 199 | 49.99 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 6 |
| 297 | 50.18 | wind | 9 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 330 | 50.25 | temperature | 10 | 720 | > th | dose dependent | rect. | 21 | 22 |
| 554 | 50.64 | wind | 9 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 633 | 50.76 | temperature | 30 | 270 | < th | dose dependent | rect. | 22 | 23 |
| 769 | 50.99 | temperature | 10 | 4320 | > th | dose dependent | no | NA | NA |
| 812 | 51.04 | temperature | 10 | 4320 | > th | dose dependent | rect. | 3 | 23 |
| 829 | 51.07 | temperature | 10 | 4320 | > th | dose dependent | rect. | 20 | 23 |
| 836 | 51.08 | temperature | 10 | 4320 | > th | dose dependent | rect. | 23 | 23 |
| 854 | 51.11 | temperature | 10 | 4320 | > th | dose dependent | rect. | 1 | 23 |