BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0244600 Os05g0244600|AK073979
(175 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G33845.1 | chr2:14317781-14318712 FORWARD LENGTH=183 176 7e-45
AT4G28440.1 | chr4:14060054-14060970 FORWARD LENGTH=154 175 9e-45
AT1G23750.1 | chr1:8400638-8401171 FORWARD LENGTH=138 175 9e-45
AT1G10590.3 | chr1:3502324-3503033 REVERSE LENGTH=154 160 4e-40
AT1G03810.1 | chr1:958759-959609 FORWARD LENGTH=144 156 6e-39
>AT2G33845.1 | chr2:14317781-14318712 FORWARD LENGTH=183
Length = 182
Score = 176 bits (445), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 87/130 (66%), Positives = 96/130 (73%), Gaps = 3/130 (2%)
Query: 44 RKPVFVKVDQLKPGTCGHTLTVKVVSANXXXXXXXXXXXXXXXXXXXXXIAECLVGDETG 103
+KPVFVKVDQLKPGT GHTLTVKVV N I+ECLVGDET
Sbjct: 53 KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPAR---ISECLVGDETA 109
Query: 104 VIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVTEPASFAVKEDNNL 163
I+FTARN+QV+++ PG T LRNA+IDMFKGSMRLAVDKWGR+E TEPA VKEDNNL
Sbjct: 110 CILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNL 169
Query: 164 SLVEYELVNV 173
SLVEYELVNV
Sbjct: 170 SLVEYELVNV 179
>AT4G28440.1 | chr4:14060054-14060970 FORWARD LENGTH=154
Length = 153
Score = 175 bits (444), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 86/132 (65%), Positives = 97/132 (73%), Gaps = 2/132 (1%)
Query: 44 RKPVFVKVDQLKPGTCGHTLTVKVVSANXXX--XXXXXXXXXXXXXXXXXXIAECLVGDE 101
RKPVFVKV+QLKPGT GHTLTVKV+ AN I ECL+GDE
Sbjct: 18 RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77
Query: 102 TGVIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVTEPASFAVKEDN 161
TG I+FTARN+QVD++ PG T ILRN+RIDMFKG+MRL VDKWGR+E T ASF VKEDN
Sbjct: 78 TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137
Query: 162 NLSLVEYELVNV 173
NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149
>AT1G23750.1 | chr1:8400638-8401171 FORWARD LENGTH=138
Length = 137
Score = 175 bits (444), Expect = 9e-45, Method: Compositional matrix adjust.
Identities = 88/145 (60%), Positives = 103/145 (71%), Gaps = 8/145 (5%)
Query: 31 MATAAKGGEKPALRKPVFVKVDQLKPGTCGHTLTVKVVSANXXXXXXXXXXXXXXXXXXX 90
MA + K G L+KP F KVDQL+PGT GH + VK+VS
Sbjct: 1 MADSTKAG----LKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLR-- 54
Query: 91 XXIAECLVGDETGVIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVT 150
I+EC+VGDETGVIVFTARN+QVD++ G+T LRNA+IDM+KGSMRLAVDKWGRVEVT
Sbjct: 55 --ISECIVGDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVT 112
Query: 151 EPASFAVKEDNNLSLVEYELVNVPE 175
EPASF VKED N+SL+EYELVNV E
Sbjct: 113 EPASFKVKEDTNMSLIEYELVNVVE 137
>AT1G10590.3 | chr1:3502324-3503033 REVERSE LENGTH=154
Length = 153
Score = 160 bits (404), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 81/133 (60%), Positives = 96/133 (72%), Gaps = 3/133 (2%)
Query: 42 ALRKPVFVKVDQLKPGTCGHTLTVKVVSANXXXXXXXXXXXXXXXXXXXXXIAECLVGDE 101
ALRKPVF KV++L+PGT GH+L VKVV N IAECLVGDE
Sbjct: 21 ALRKPVFTKVNELRPGTNGHSLNVKVV--NTKMVMQRGGGRPMGPQSRQMRIAECLVGDE 78
Query: 102 TGVIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVT-EPASFAVKED 160
TG+I+FTARN+QVDM+ G+ LRNA+IDM+KGSMRLAVD+WGRVEV EP VK+D
Sbjct: 79 TGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDD 138
Query: 161 NNLSLVEYELVNV 173
NNLSL+EYELV+V
Sbjct: 139 NNLSLIEYELVSV 151
>AT1G03810.1 | chr1:958759-959609 FORWARD LENGTH=144
Length = 143
Score = 156 bits (394), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 75/128 (58%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
Query: 44 RKPVFVKVDQLKPGTCGHTLTVKVVSANXXXXXXXXXXXXXXXXXXXXXIAECLVGDETG 103
RKPVFVKVDQLKPGT GHTL VKV+ +N IAECL+GD+TG
Sbjct: 15 RKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPR-IAECLIGDDTG 73
Query: 104 VIVFTARNEQVDMLMPGNTAILRNARIDMFKGSMRLAVDKWGRVEVTEPASFAVKEDNNL 163
I+FTARN+QVD++ G T ILRNA+ID+FK +MR+AVD+WGR+E+T P SF V NNL
Sbjct: 74 CILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRANNL 133
Query: 164 SLVEYELV 171
SLVEYE++
Sbjct: 134 SLVEYEVI 141
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.133 0.385
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,727,579
Number of extensions: 77045
Number of successful extensions: 128
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 5
Length of query: 175
Length of database: 11,106,569
Length adjustment: 92
Effective length of query: 83
Effective length of database: 8,584,297
Effective search space: 712496651
Effective search space used: 712496651
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 108 (46.2 bits)