Os05g0100800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Nucleic acid-binding, OB-fold domain containing protein.
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Os05g0100800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Nucleic acid-binding, OB-fold domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 17.65 | 0.197 | 13.2 | 0.164 | 0.89 | 0.221 | -0.123 | -1.05 | 0.2 | 18.8 | 10 | 1405 | -- | -- |
| 19.25 | 0.206 | 13.2 | 0.0634 | 0.877 | 0.269 | -0.128 | -- | 0.136 | 18 | 50 | 1666 | -- | -- |
| 17.69 | 0.196 | 13.2 | 0.164 | 0.889 | 0.22 | -- | -1.05 | 0.2 | 18.8 | 10 | 1397 | -- | -- |
| 19.19 | 0.205 | 13.2 | 0.0611 | 0.877 | 0.319 | -- | -- | 0.133 | 18 | 70.97 | 1612 | -- | -- |
| 58.22 | 0.357 | 13.2 | 0.0249 | -- | 0.188 | -- | -0.0688 | 0.117 | -- | 10 | 1473 | -- | -- |
| 20.54 | 0.212 | 13.2 | 0.0549 | 0.887 | -- | -0.091 | -- | 0.135 | 18.8 | -- | -- | -- | -- |
| 20.56 | 0.212 | 13.2 | 0.0564 | 0.887 | -- | -- | -- | 0.135 | 18.8 | -- | -- | -- | -- |
| 58.25 | 0.357 | 13.2 | 0.0271 | -- | 0.188 | -- | -- | 0.117 | -- | 9.962 | 1491 | -- | -- |
| 19.29 | 0.206 | 13.2 | -- | 0.876 | 0.317 | -- | -- | 0.127 | 18 | 111.2 | 1067 | -- | -- |
| 61.65 | 0.367 | 13.2 | 0.0364 | -- | -- | -- | -- | 0.117 | -- | -- | -- | -- | -- |
| 20.65 | 0.213 | 13.2 | -- | 0.886 | -- | -- | -- | 0.128 | 18.8 | -- | -- | -- | -- |
| 58.27 | 0.357 | 13.2 | -- | -- | 0.188 | -- | -- | 0.114 | -- | 9.962 | 1491 | -- | -- |
| 61.69 | 0.367 | 13.2 | -- | -- | -- | -- | -- | 0.113 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 16.64 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 9 |
| 8 | 17.05 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 10 |
| 10 | 17.11 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 9 |
| 15 | 17.22 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 6 |
| 16 | 17.23 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 9 |
| 19 | 17.24 | radiation | 20 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 32 | 17.40 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 6 |
| 35 | 17.43 | temperature | 20 | 720 | > th | dose independent | rect. | 4 | 2 |
| 40 | 17.46 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 7 |
| 46 | 17.49 | radiation | 10 | 90 | < th | dose independent | rect. | 5 | 12 |
| 70 | 17.59 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 21 |
| 71 | 17.60 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 20 |
| 77 | 17.62 | radiation | 20 | 90 | < th | dose independent | rect. | 5 | 19 |
| 80 | 17.62 | humidity | 50 | 90 | > th | dose dependent | rect. | 5 | 14 |
| 83 | 17.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 13 |
| 86 | 17.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 23 | 18 |
| 88 | 17.64 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 111 | 17.69 | radiation | 10 | 1440 | < th | dose dependent | sin | 2 | NA |
| 112 | 17.69 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 22 |
| 141 | 17.72 | radiation | 30 | 10 | < th | dose dependent | rect. | 5 | 19 |
| 145 | 17.73 | temperature | 20 | 720 | > th | dose dependent | rect. | 4 | 3 |
| 152 | 17.74 | radiation | 10 | 1440 | < th | dose dependent | rect. | 12 | 22 |
| 163 | 17.76 | radiation | 30 | 90 | < th | dose dependent | rect. | 5 | 19 |
| 197 | 17.79 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 249 | 17.80 | temperature | 15 | 90 | > th | dose independent | rect. | 7 | 22 |
| 293 | 17.83 | radiation | 30 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 351 | 17.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 14 |
| 353 | 17.86 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 18 |
| 375 | 17.87 | radiation | 20 | 1440 | < th | dose independent | sin | 3 | NA |
| 377 | 17.87 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 378 | 17.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 6 |
| 380 | 17.87 | radiation | 20 | 1440 | < th | dose independent | rect. | 6 | 11 |
| 617 | 17.91 | radiation | 20 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 619 | 17.91 | wind | 1 | 90 | > th | dose dependent | rect. | 5 | 2 |
| 652 | 17.92 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 23 |
| 678 | 17.92 | radiation | 10 | 10 | > th | dose dependent | rect. | 13 | 23 |
| 681 | 17.93 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 4 |
| 683 | 17.93 | radiation | 10 | 270 | < th | dose independent | rect. | 3 | 14 |
| 703 | 17.94 | humidity | 80 | 10 | > th | dose independent | rect. | 5 | 7 |
| 808 | 17.97 | humidity | 80 | 90 | > th | dose independent | rect. | 5 | 9 |
| 833 | 17.97 | radiation | 40 | 10 | < th | dose dependent | rect. | 5 | 15 |
| 836 | 17.97 | radiation | 1 | 1440 | > th | dose dependent | rect. | 16 | 20 |
| 910 | 18.00 | humidity | 70 | 90 | > th | dose dependent | rect. | 5 | 6 |
| 948 | 18.02 | radiation | 10 | 720 | < th | dose independent | rect. | 21 | 10 |
| 961 | 18.03 | radiation | 20 | 1440 | < th | dose independent | sin | 12 | NA |