BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os05g0100800 Os05g0100800|AK121085
         (134 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G10590.3  | chr1:3502324-3503033 REVERSE LENGTH=154            202   5e-53
AT1G23750.1  | chr1:8400638-8401171 FORWARD LENGTH=138            198   6e-52
AT2G33845.1  | chr2:14317781-14318712 FORWARD LENGTH=183          183   2e-47
AT4G28440.1  | chr4:14060054-14060970 FORWARD LENGTH=154          157   2e-39
AT1G03810.1  | chr1:958759-959609 FORWARD LENGTH=144              144   1e-35

>AT1G10590.3 | chr1:3502324-3503033 REVERSE LENGTH=154
          Length = 153

 Score =  202 bits (513), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 95/133 (71%), Positives = 115/133 (86%), Gaps = 4/133 (3%)

Query: 4   SGARRQPSFTKVDQLRPGTHGHNLLLKVVDSKMVLQRGGG----PQGRHMRIAECLVGDE 59
           + A R+P FTKV++LRPGT+GH+L +KVV++KMV+QRGGG    PQ R MRIAECLVGDE
Sbjct: 19  TSALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRPMGPQSRQMRIAECLVGDE 78

Query: 60  TGIIVFTARNDQVDVMKAGASVDLRNAKIDMFKGSMRLAVDKWGIVKAAESPADFTVKED 119
           TGII+FTARNDQVD+MK G+ V LRNAKIDM+KGSMRLAVD+WG V+ AE P D TVK+D
Sbjct: 79  TGIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDD 138

Query: 120 NNMSLIEFELVTV 132
           NN+SLIE+ELV+V
Sbjct: 139 NNLSLIEYELVSV 151



>AT1G23750.1 | chr1:8400638-8401171 FORWARD LENGTH=138
          Length = 137

 Score =  198 bits (504), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 97/138 (70%), Positives = 115/138 (83%), Gaps = 5/138 (3%)

Query: 1   MADS--GARRQPSFTKVDQLRPGTHGHNLLLKVVDSKMVLQRG--GGPQGRHMRIAECLV 56
           MADS     ++P+FTKVDQLRPGT GHN+ +K+V +KMVLQ+G   GPQ R +RI+EC+V
Sbjct: 1   MADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRADGPQARQLRISECIV 60

Query: 57  GDETGIIVFTARNDQVDVMKAGASVDLRNAKIDMFKGSMRLAVDKWGIVKAAESPADFTV 116
           GDETG+IVFTARNDQVD+MK G++V LRNAKIDM+KGSMRLAVDKWG V+  E PA F V
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTE-PASFKV 119

Query: 117 KEDNNMSLIEFELVTVVE 134
           KED NMSLIE+ELV VVE
Sbjct: 120 KEDTNMSLIEYELVNVVE 137



>AT2G33845.1 | chr2:14317781-14318712 FORWARD LENGTH=183
          Length = 182

 Score =  183 bits (464), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 87/131 (66%), Positives = 105/131 (80%), Gaps = 4/131 (3%)

Query: 7   RRQPSFTKVDQLRPGTHGHNLLLKVVDSKMVLQRGGGPQGRHMR---IAECLVGDETGII 63
           +++P F KVDQL+PGT GH L +KVVD   V Q+ G     H+R   I+ECLVGDET  I
Sbjct: 52  KKKPVFVKVDQLKPGTSGHTLTVKVVDQNSVPQKPGAASSSHLRPARISECLVGDETACI 111

Query: 64  VFTARNDQVDVMKAGASVDLRNAKIDMFKGSMRLAVDKWGIVKAAESPADFTVKEDNNMS 123
           +FTARNDQV++MK GA+V+LRNAKIDMFKGSMRLAVDKWG ++A E PAD TVKEDNN+S
Sbjct: 112 LFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATE-PADITVKEDNNLS 170

Query: 124 LIEFELVTVVE 134
           L+E+ELV VVE
Sbjct: 171 LVEYELVNVVE 181



>AT4G28440.1 | chr4:14060054-14060970 FORWARD LENGTH=154
          Length = 153

 Score =  157 bits (396), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 101/141 (71%), Gaps = 17/141 (12%)

Query: 4   SGARRQPSFTKVDQLRPGTHGHNLLLKVVDSKMV------------LQRGGGPQGRHMRI 51
           S  +R+P F KV+QL+PGT GH L +KV+++ +V            L R   P     RI
Sbjct: 14  STVKRKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPS----RI 69

Query: 52  AECLVGDETGIIVFTARNDQVDVMKAGASVDLRNAKIDMFKGSMRLAVDKWGIVKAAESP 111
            ECL+GDETG I+FTARNDQVD+MK GA+V LRN++IDMFKG+MRL VDKWG ++A  + 
Sbjct: 70  VECLIGDETGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGA- 128

Query: 112 ADFTVKEDNNMSLIEFELVTV 132
           A FTVKEDNN+SL+E+EL+ V
Sbjct: 129 ASFTVKEDNNLSLVEYELINV 149



>AT1G03810.1 | chr1:958759-959609 FORWARD LENGTH=144
          Length = 143

 Score =  144 bits (363), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 70/130 (53%), Positives = 96/130 (73%), Gaps = 6/130 (4%)

Query: 7   RRQPSFTKVDQLRPGTHGHNLLLKVVDS---KMVLQRGGGPQG--RHMRIAECLVGDETG 61
           +R+P F KVDQL+PGT GH L++KV++S   K  +++    Q      RIAECL+GD+TG
Sbjct: 14  KRKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAECLIGDDTG 73

Query: 62  IIVFTARNDQVDVMKAGASVDLRNAKIDMFKGSMRLAVDKWGIVKAAESPADFTVKEDNN 121
            I+FTARNDQVD+MK GA+V LRNAKID+FK +MR+AVD+WG ++    P  F V   NN
Sbjct: 74  CILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEIT-GPVSFEVNRANN 132

Query: 122 MSLIEFELVT 131
           +SL+E+E++T
Sbjct: 133 LSLVEYEVIT 142



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,701,187
Number of extensions: 99078
Number of successful extensions: 222
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 213
Number of HSP's successfully gapped: 5
Length of query: 134
Length of database: 11,106,569
Length adjustment: 88
Effective length of query: 46
Effective length of database: 8,693,961
Effective search space: 399922206
Effective search space used: 399922206
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 106 (45.4 bits)