BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os01g0238600 Os01g0238600|AK073776
         (141 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G33845.1  | chr2:14317781-14318712 FORWARD LENGTH=183          202   5e-53
AT4G28440.1  | chr4:14060054-14060970 FORWARD LENGTH=154          200   2e-52
AT1G23750.1  | chr1:8400638-8401171 FORWARD LENGTH=138            191   1e-49
AT1G10590.3  | chr1:3502324-3503033 REVERSE LENGTH=154            177   2e-45
AT1G03810.1  | chr1:958759-959609 FORWARD LENGTH=144              174   2e-44

>AT2G33845.1 | chr2:14317781-14318712 FORWARD LENGTH=183
          Length = 182

 Score =  202 bits (514), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/131 (77%), Positives = 111/131 (84%), Gaps = 4/131 (3%)

Query: 13  RKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAPS--RPPRIAECLIGDETGA 70
           +KPVF KVDQLKP TSGHTLTVKVV    VP   +PG A+ S  RP RI+ECL+GDET  
Sbjct: 53  KKPVFVKVDQLKPGTSGHTLTVKVVDQNSVP--QKPGAASSSHLRPARISECLVGDETAC 110

Query: 71  IVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATEPASFTVKEDNNLS 130
           I+FTARN+QV+L+KPGATV +RNAKIDMFKGSMRLAVDKWGRIEATEPA  TVKEDNNLS
Sbjct: 111 ILFTARNDQVELMKPGATVNLRNAKIDMFKGSMRLAVDKWGRIEATEPADITVKEDNNLS 170

Query: 131 LVEYELVNVTE 141
           LVEYELVNV E
Sbjct: 171 LVEYELVNVVE 181



>AT4G28440.1 | chr4:14060054-14060970 FORWARD LENGTH=154
          Length = 153

 Score =  200 bits (508), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 97/132 (73%), Positives = 112/132 (84%), Gaps = 5/132 (3%)

Query: 13  RKPVFTKVDQLKPVTSGHTLTVKVVSAT---PVPGRARPG--VAAPSRPPRIAECLIGDE 67
           RKPVF KV+QLKP T+GHTLTVKV+ A    PV  + RP   ++ PS+P RI ECLIGDE
Sbjct: 18  RKPVFVKVEQLKPGTTGHTLTVKVIEANIVVPVTRKTRPASSLSRPSQPSRIVECLIGDE 77

Query: 68  TGAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATEPASFTVKEDN 127
           TG I+FTARN+QVDL+KPGATVI+RN++IDMFKG+MRL VDKWGRIEAT  ASFTVKEDN
Sbjct: 78  TGCILFTARNDQVDLMKPGATVILRNSRIDMFKGTMRLGVDKWGRIEATGAASFTVKEDN 137

Query: 128 NLSLVEYELVNV 139
           NLSLVEYEL+NV
Sbjct: 138 NLSLVEYELINV 149



>AT1G23750.1 | chr1:8400638-8401171 FORWARD LENGTH=138
          Length = 137

 Score =  191 bits (484), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 107/137 (78%), Gaps = 1/137 (0%)

Query: 5   AAGEKPALRKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPGVAAPSRPPRIAECLI 64
           A   K  L+KP FTKVDQL+P TSGH + VK+VS   V  + R      +R  RI+EC++
Sbjct: 2   ADSTKAGLKKPAFTKVDQLRPGTSGHNVNVKIVSTKMVLQKGRAD-GPQARQLRISECIV 60

Query: 65  GDETGAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATEPASFTVK 124
           GDETG IVFTARN+QVDL+K G+TV +RNAKIDM+KGSMRLAVDKWGR+E TEPASF VK
Sbjct: 61  GDETGVIVFTARNDQVDLMKEGSTVTLRNAKIDMYKGSMRLAVDKWGRVEVTEPASFKVK 120

Query: 125 EDNNLSLVEYELVNVTE 141
           ED N+SL+EYELVNV E
Sbjct: 121 EDTNMSLIEYELVNVVE 137



>AT1G10590.3 | chr1:3502324-3503033 REVERSE LENGTH=154
          Length = 153

 Score =  177 bits (448), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 87/132 (65%), Positives = 107/132 (81%), Gaps = 4/132 (3%)

Query: 11  ALRKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRA--RPGVAAPSRPPRIAECLIGDET 68
           ALRKPVFTKV++L+P T+GH+L VKVV+   V  R   RP +   SR  RIAECL+GDET
Sbjct: 21  ALRKPVFTKVNELRPGTNGHSLNVKVVNTKMVMQRGGGRP-MGPQSRQMRIAECLVGDET 79

Query: 69  GAIVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIE-ATEPASFTVKEDN 127
           G I+FTARN+QVD++K G+ V +RNAKIDM+KGSMRLAVD+WGR+E A EP   TVK+DN
Sbjct: 80  GIIIFTARNDQVDMMKEGSVVTLRNAKIDMYKGSMRLAVDRWGRVEVAEEPTDITVKDDN 139

Query: 128 NLSLVEYELVNV 139
           NLSL+EYELV+V
Sbjct: 140 NLSLIEYELVSV 151



>AT1G03810.1 | chr1:958759-959609 FORWARD LENGTH=144
          Length = 143

 Score =  174 bits (441), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/127 (66%), Positives = 98/127 (77%), Gaps = 2/127 (1%)

Query: 13  RKPVFTKVDQLKPVTSGHTLTVKVVSATPVPGRARPG--VAAPSRPPRIAECLIGDETGA 70
           RKPVF KVDQLKP TSGHTL VKV+ + PV    R       P   PRIAECLIGD+TG 
Sbjct: 15  RKPVFVKVDQLKPGTSGHTLIVKVLESNPVKPAIRKSSLTQQPISSPRIAECLIGDDTGC 74

Query: 71  IVFTARNEQVDLLKPGATVIMRNAKIDMFKGSMRLAVDKWGRIEATEPASFTVKEDNNLS 130
           I+FTARN+QVDL+K GATVI+RNAKID+FK +MR+AVD+WGRIE T P SF V   NNLS
Sbjct: 75  ILFTARNDQVDLMKTGATVILRNAKIDLFKDTMRMAVDRWGRIEITGPVSFEVNRANNLS 134

Query: 131 LVEYELV 137
           LVEYE++
Sbjct: 135 LVEYEVI 141



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.315    0.131    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 2,908,426
Number of extensions: 107485
Number of successful extensions: 299
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 5
Length of query: 141
Length of database: 11,106,569
Length adjustment: 89
Effective length of query: 52
Effective length of database: 8,666,545
Effective search space: 450660340
Effective search space used: 450660340
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 106 (45.4 bits)