BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0212400 Os05g0212400|AK072108
(280 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0212400 Conserved hypothetical protein 1589, plant fam... 546 e-156
Os01g0220200 Conserved hypothetical protein 1589, plant fam... 135 3e-32
Os02g0137100 Conserved hypothetical protein 1589, plant fam... 108 5e-24
Os06g0705300 Conserved hypothetical protein 1589, plant fam... 83 3e-16
>Os05g0212400 Conserved hypothetical protein 1589, plant family protein
Length = 280
Score = 546 bits (1407), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/280 (95%), Positives = 268/280 (95%)
Query: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY
Sbjct: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
Query: 61 HLMKYXXXXXXXXXXXXNGIRPMPVNNLPMGYPVLQQPGIPAPVQPHVNSISCGPPGCHV 120
HLMKY NGIRPMPVNNLPMGYPVLQQPGIPAPVQPHVNSISCGPPGCHV
Sbjct: 61 HLMKYPVPQQVPLTPTQNGIRPMPVNNLPMGYPVLQQPGIPAPVQPHVNSISCGPPGCHV 120
Query: 121 VNGIPAPGGYNPIRMSSGNGMTENEVPGTAHAGAMSSEMAVSPSSAMSSNHVSFTPDISG 180
VNGIPAPGGYNPIRMSSGNGMTENEVPGTAHAGAMSSEMAVSPSSAMSSNHVSFTPDISG
Sbjct: 121 VNGIPAPGGYNPIRMSSGNGMTENEVPGTAHAGAMSSEMAVSPSSAMSSNHVSFTPDISG 180
Query: 181 MDVDASTVNATFGDDLGNGGPLQIGPNGGDSSSLGQQIWDFSLSDLSADLTNLGDLAALE 240
MDVDASTVNATFGDDLGNGGPLQIGPNGGDSSSLGQQIWDFSLSDLSADLTNLGDLAALE
Sbjct: 181 MDVDASTVNATFGDDLGNGGPLQIGPNGGDSSSLGQQIWDFSLSDLSADLTNLGDLAALE 240
Query: 241 NYSGNPFLPSDSDIFESPDDDIVEYFADAINGPSQSDEEK 280
NYSGNPFLPSDSDIFESPDDDIVEYFADAINGPSQSDEEK
Sbjct: 241 NYSGNPFLPSDSDIFESPDDDIVEYFADAINGPSQSDEEK 280
>Os01g0220200 Conserved hypothetical protein 1589, plant family protein
Length = 168
Score = 135 bits (340), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 65/84 (77%), Positives = 70/84 (83%)
Query: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
MN+GEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLK+QI LFNHLL+HQY
Sbjct: 43 MNKGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKRQIILFNHLLQHQY 102
Query: 61 HLMKYXXXXXXXXXXXXNGIRPMP 84
+LMKY NG+ PMP
Sbjct: 103 NLMKYPAPPNVPLAPMQNGMHPMP 126
>Os02g0137100 Conserved hypothetical protein 1589, plant family protein
Length = 329
Score = 108 bits (270), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 98/282 (34%), Positives = 131/282 (46%), Gaps = 46/282 (16%)
Query: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
MN+ EVV TLS +A+IEP FT LVWQKLEEEN EFF+AYY+RL LK QI +FN LLE QY
Sbjct: 36 MNQKEVVETLSFQAKIEPSFTELVWQKLEEENREFFKAYYVRLMLKNQIMVFNKLLEDQY 95
Query: 61 HLM-KYXXXXXXXXXXXXNGIRPMPVNNLPMGYP-VLQQPGIPAPVQPHVNS--ISCGPP 116
LM K NG +N P +P + P+ +S I G P
Sbjct: 96 RLMCKEQPSGVPSMPPTTNGSNMGTLNQNACFLPDTTPSTAMPDSLLPNGSSSGIVNGTP 155
Query: 117 GC-------HVVNGIPAP--------GGYNPI--RMSSGNGM---TENEVPGTAHAGAMS 156
V++G+P+ +N R + NG TE G + G +
Sbjct: 156 SSDQFIYAGKVIHGLPSSMDASSSLLAAHNSTAGRFNGDNGTTIKTEASYSGNSDFGFCN 215
Query: 157 SEMAVSPSSAMSSNHVSFTPDISGMDVDASTVNATFGDDLGNGGPLQIGPNGGDSSSLG- 215
+ P ++ D SG +S + NG PL DSSS G
Sbjct: 216 ESAFLEPCQSIG--------DASGGSFSSSEL---------NGQPLGDPIMDMDSSSFGF 258
Query: 216 -QQI-WDFSLSDLSADLTNLGDLAALENYSGNPFLPSDSDIF 255
QI +FS SDL+ D + ++ LENY +PF+PS+ + F
Sbjct: 259 LSQIPRNFSFSDLTEDFSQSAEI--LENYGRSPFIPSEPNNF 298
>Os06g0705300 Conserved hypothetical protein 1589, plant family protein
Length = 289
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 44/63 (69%)
Query: 1 MNRGEVVRTLSTRARIEPGFTTLVWQKLEEENSEFFRAYYIRLKLKKQINLFNHLLEHQY 60
M++ EVV LS A+IEP T VWQKLEE N EFF+AYY+RL LK QI FN LLE Q
Sbjct: 21 MDKKEVVDALSREAKIEPSVTQHVWQKLEENNREFFKAYYLRLMLKNQITAFNKLLEDQL 80
Query: 61 HLM 63
++
Sbjct: 81 RII 83
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.134 0.399
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 10,744,590
Number of extensions: 518739
Number of successful extensions: 1119
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1118
Number of HSP's successfully gapped: 4
Length of query: 280
Length of database: 17,035,801
Length adjustment: 100
Effective length of query: 180
Effective length of database: 11,814,401
Effective search space: 2126592180
Effective search space used: 2126592180
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 155 (64.3 bits)