BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0187000 Os05g0187000|AK103126
(272 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0187000 Beta 2 subunit of 20S proteasome (20S proteaso... 560 e-160
AK062648 297 6e-81
Os02g0770000 Beta 1 subunit of 20S proteasome 101 7e-22
Os06g0139900 Similar to Beta 1 subunit of 20S proteasome 99 3e-21
Os06g0153800 Beta 5 subunit of 20S proteasome 84 1e-16
Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) ... 68 6e-12
>Os05g0187000 Beta 2 subunit of 20S proteasome (20S proteasome beta subunit)
Length = 272
Score = 560 bits (1444), Expect = e-160, Method: Compositional matrix adjust.
Identities = 272/272 (100%), Positives = 272/272 (100%)
Query: 1 MAGATDLPPKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATE 60
MAGATDLPPKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATE
Sbjct: 1 MAGATDLPPKGGFSYDNCARNAMLVEKGLKMPGFLKTGTTIVGLVFQDGVVLGADTRATE 60
Query: 61 GPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTL 120
GPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTL
Sbjct: 61 GPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTL 120
Query: 121 LKSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKY 180
LKSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKY
Sbjct: 121 LKSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKY 180
Query: 181 KEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVCVITKGKTEYLRNHQLPNPRTYVSSKG 240
KEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVCVITKGKTEYLRNHQLPNPRTYVSSKG
Sbjct: 181 KEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVCVITKGKTEYLRNHQLPNPRTYVSSKG 240
Query: 241 YNFTKGQTVVLSTKITQLKPKVEVTEGDAMEE 272
YNFTKGQTVVLSTKITQLKPKVEVTEGDAMEE
Sbjct: 241 YNFTKGQTVVLSTKITQLKPKVEVTEGDAMEE 272
>AK062648
Length = 295
Score = 297 bits (760), Expect = 6e-81, Method: Compositional matrix adjust.
Identities = 145/217 (66%), Positives = 173/217 (79%), Gaps = 3/217 (1%)
Query: 5 TDLPPKGGFSYDNCARNAMLVEKGL-KMPGF--LKTGTTIVGLVFQDGVVLGADTRATEG 61
+D GGF++DNC RN +++ G K P +KTGTTIVG++++DGVVLGADTR+T G
Sbjct: 18 SDDANHGGFNFDNCRRNELIMAAGGGKGPAIKAMKTGTTIVGVLYKDGVVLGADTRSTGG 77
Query: 62 PIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTDMVSSQLQLHRYATGRESRVVTSLTLL 121
V DKNCEKIHY+APNIYCCGAGTA DTE T ++SSQL+LHR T ESRV T++TLL
Sbjct: 78 STVMDKNCEKIHYIAPNIYCCGAGTAVDTENTTALISSQLELHRLNTDTESRVSTAMTLL 137
Query: 122 KSHLFSYQGHVSAALVLGGVDVTGPHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYK 181
K LF YQGHVSAALVLGGVD TGPHL+TVYPHGSTD LPF TMGSGSLAAMSVFE+ YK
Sbjct: 138 KRMLFQYQGHVSAALVLGGVDCTGPHLYTVYPHGSTDKLPFVTMGSGSLAAMSVFENGYK 197
Query: 182 EGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVCVITK 218
+GLT E +LV +AI G++NDLGSGSNVD+ +I +
Sbjct: 198 DGLTEAEAKRLVQDAILAGVWNDLGSGSNVDITIIKR 234
>Os02g0770000 Beta 1 subunit of 20S proteasome
Length = 246
Score = 101 bits (251), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 98/183 (53%), Gaps = 1/183 (0%)
Query: 36 KTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD 95
+ GTTIVG+ + GVVL AD+R + G VA++ +KI + N+Y C +G+AADT+ ++D
Sbjct: 23 RMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISD 82
Query: 96 MVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVLGGVD-VTGPHLHTVYPH 154
V L H G+ + V + L++ + + + A +++GG D G + +V
Sbjct: 83 YVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLG 142
Query: 155 GSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVC 214
G+ PFA GSGS + + ++KEG+++EE + V + + I D SG V
Sbjct: 143 GTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTV 202
Query: 215 VIT 217
I
Sbjct: 203 TIN 205
>Os06g0139900 Similar to Beta 1 subunit of 20S proteasome
Length = 246
Score = 99.4 bits (246), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 58/183 (31%), Positives = 98/183 (53%), Gaps = 1/183 (0%)
Query: 36 KTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD 95
+ GTTIVG+ + GVVL AD+R + G VA++ +KI + N+Y C +G+AADT+ +++
Sbjct: 23 RMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYVCRSGSAADTQVISE 82
Query: 96 MVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGHVSAALVLGGVD-VTGPHLHTVYPH 154
V L H G+ + V + L++ + + + A +++GG D G + +V
Sbjct: 83 YVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLG 142
Query: 155 GSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDVC 214
G+ PFA GSGS + + ++KEG+++EE + V + + I D SG V
Sbjct: 143 GTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTV 202
Query: 215 VIT 217
I
Sbjct: 203 TIN 205
>Os06g0153800 Beta 5 subunit of 20S proteasome
Length = 277
Score = 84.0 bits (206), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 56/179 (31%), Positives = 88/179 (49%), Gaps = 1/179 (0%)
Query: 36 KTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVTD 95
K GTT + +F GV++ AD+RA+ G ++ + KI + P + AG AAD +
Sbjct: 58 KKGTTTLAFIFDKGVIVAADSRASMGGYISSQTVRKIIEINPYMLGTMAGGAADCQFWHR 117
Query: 96 MVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGH-VSAALVLGGVDVTGPHLHTVYPH 154
+ + +LH A R + + LL + L+SY+G +S ++ G D GP L+ V
Sbjct: 118 NLGIKCRLHELANKRRISIAGASKLLANILYSYRGMGLSIGTMIAGWDEKGPGLYYVDSE 177
Query: 155 GSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDLGSGSNVDV 213
G+ ++GSGSL A + + Y+ + EE +L AI F D SG V V
Sbjct: 178 GARLMGSRFSVGSGSLYAYGILDEGYRYVMPVEEAAELARRAIYQATFRDGASGGCVSV 236
>Os11g0615700 Proteasome subunit alpha type 5 (EC 3.4.25.1) (20S proteasome alpha
subunit E) (20S proteasome subunit alpha-5)
Length = 237
Score = 68.2 bits (165), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 54/192 (28%), Positives = 90/192 (46%), Gaps = 12/192 (6%)
Query: 35 LKTGTTIVGLVFQDGVVLGADTRATEGPIVADKNCEKIHYMAPNIYCCGAGTAADTEAVT 94
+K G+T +GL +DGVVL + R T P++ + EKI + +I C +G AD +
Sbjct: 31 IKLGSTAIGLKTKDGVVLAVEKRVT-SPLLEPSSVEKIMEIDEHIGCAMSGLIADARTLV 89
Query: 95 DMVSSQLQLHRYATGRESRVVTSLTLLKSHLFSYQGH---------VSAALVLGGVDVTG 145
+ + Q HR++ G E V S T L G +L++ G D G
Sbjct: 90 EHARVETQNHRFSYG-EPMTVESTTQAICDLALRFGEGDEESMSRPFGVSLLIAGHDENG 148
Query: 146 PHLHTVYPHGSTDTLPFATMGSGSLAAMSVFESKYKEGLTREEGIQLVAEAIRGGIFNDL 205
P L+ P G+ +GSGS A S + +Y + LT +E + +A +I + +
Sbjct: 149 PSLYYTDPSGTFWQCNAKAIGSGSEGADSSLQEQYNKELTLQEA-ETIALSILKQVMEEK 207
Query: 206 GSGSNVDVCVIT 217
+ +NVD+ ++
Sbjct: 208 VTPNNVDIAKVS 219
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.316 0.133 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 9,051,774
Number of extensions: 362528
Number of successful extensions: 697
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 699
Number of HSP's successfully gapped: 6
Length of query: 272
Length of database: 17,035,801
Length adjustment: 99
Effective length of query: 173
Effective length of database: 11,866,615
Effective search space: 2052924395
Effective search space used: 2052924395
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)