Os06g0139900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Beta 1 subunit of 20S proteasome.
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Os06g0139900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to Beta 1 subunit of 20S proteasome.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.19 | 0.2 | 11.1 | 0.102 | 0.247 | 0.502 | -0.436 | 0.982 | -0.064 | 23 | 26.64 | 792 | -- | -- |
| 19.15 | 0.204 | 11.1 | 0.281 | 0.248 | 0.462 | -0.625 | -- | -0.0228 | 22.7 | 28.7 | 791 | -- | -- |
| 18.88 | 0.202 | 11.1 | 0.0813 | 0.256 | 0.521 | -- | 1.23 | -0.0673 | 22.9 | 26.98 | 826 | -- | -- |
| 20.77 | 0.212 | 11.1 | 0.324 | 0.225 | 0.451 | -- | -- | -0.0316 | 23.8 | 31.18 | 1163 | -- | -- |
| 22.1 | 0.219 | 11.1 | 0.087 | -- | 0.512 | -- | 1.16 | -0.0714 | -- | 25.77 | 1371 | -- | -- |
| 22.18 | 0.221 | 11.1 | 0.154 | 0.159 | -- | -0.639 | -- | -0.121 | 23.1 | -- | -- | -- | -- |
| 23.92 | 0.229 | 11.1 | 0.18 | 0.162 | -- | -- | -- | -0.119 | 23.3 | -- | -- | -- | -- |
| 21.86 | 0.219 | 11.1 | 0.276 | -- | 0.507 | -- | -- | -0.0503 | -- | 47.98 | 1598 | -- | -- |
| 23.02 | 0.223 | 11.1 | -- | 0.192 | 0.305 | -- | -- | -0.0953 | 23.8 | 36.87 | 1256 | -- | -- |
| 25.56 | 0.236 | 11.1 | 0.184 | -- | -- | -- | -- | -0.118 | -- | -- | -- | -- | -- |
| 24.77 | 0.233 | 11.1 | -- | 0.164 | -- | -- | -- | -0.139 | 23.4 | -- | -- | -- | -- |
| 23.76 | 0.228 | 11.1 | -- | -- | 0.42 | -- | -- | -0.0907 | -- | 46.32 | 1593 | -- | -- |
| 26.46 | 0.24 | 11.1 | -- | -- | -- | -- | -- | -0.138 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.81 | temperature | 10 | 720 | > th | dose dependent | rect. | 22 | 14 |
| 2 | 17.86 | temperature | 15 | 270 | > th | dose dependent | sin | 4 | NA |
| 13 | 17.99 | temperature | 30 | 1440 | < th | dose dependent | rect. | 17 | 5 |
| 15 | 18.00 | temperature | 25 | 1440 | < th | dose dependent | rect. | 18 | 2 |
| 19 | 18.00 | temperature | 30 | 720 | < th | dose dependent | rect. | 20 | 18 |
| 20 | 18.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 20 | 1 |
| 22 | 18.01 | temperature | 20 | 1440 | > th | dose dependent | rect. | 19 | 2 |
| 28 | 18.02 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 31 | 18.02 | temperature | 10 | 1440 | > th | dose dependent | rect. | 18 | 4 |
| 33 | 18.03 | temperature | 20 | 720 | > th | dose dependent | sin | 8 | NA |
| 53 | 18.06 | temperature | 20 | 1440 | > th | dose dependent | rect. | 17 | 8 |
| 86 | 18.09 | temperature | 25 | 720 | < th | dose dependent | rect. | 3 | 20 |
| 102 | 18.11 | temperature | 10 | 90 | > th | dose dependent | sin | 2 | NA |
| 191 | 18.20 | temperature | 10 | 720 | > th | dose dependent | rect. | 24 | 10 |
| 195 | 18.20 | temperature | 30 | 270 | < th | dose dependent | rect. | 3 | 13 |
| 212 | 18.22 | temperature | 20 | 1440 | > th | dose dependent | sin | 12 | NA |
| 227 | 18.23 | temperature | 10 | 720 | > th | dose dependent | sin | 7 | NA |
| 229 | 18.23 | temperature | 30 | 720 | < th | dose dependent | sin | 7 | NA |
| 344 | 18.29 | temperature | 25 | 1440 | < th | dose independent | rect. | 17 | 4 |
| 371 | 18.30 | temperature | 30 | 90 | < th | dose dependent | rect. | 5 | 12 |
| 381 | 18.31 | temperature | 25 | 720 | < th | dose dependent | no | NA | NA |
| 404 | 18.32 | temperature | 30 | 1440 | < th | dose dependent | sin | 14 | NA |
| 415 | 18.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 9 | 23 |
| 416 | 18.32 | temperature | 25 | 720 | < th | dose dependent | rect. | 13 | 23 |
| 423 | 18.33 | temperature | 30 | 270 | < th | dose dependent | sin | 3 | NA |
| 518 | 18.37 | temperature | 10 | 1440 | > th | dose dependent | sin | 13 | NA |
| 677 | 18.42 | temperature | 25 | 1440 | > th | dose independent | rect. | 17 | 3 |
| 846 | 18.47 | temperature | 25 | 1440 | > th | dose independent | rect. | 18 | 1 |