BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0182900 Os05g0182900|Os05g0182900
(346 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0182900 Hypothetical protein 684 0.0
Os05g0203500 Conserved hypothetical protein 247 8e-66
Os08g0459400 Transposase, IS4 domain containing protein 191 7e-49
Os05g0118600 118 6e-27
Os03g0141100 Conserved hypothetical protein 86 3e-17
Os03g0157450 Similar to Transposase (Fragment) 86 6e-17
Os05g0208600 85 9e-17
Os06g0210700 81 1e-15
>Os05g0182900 Hypothetical protein
Length = 346
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 332/346 (95%), Positives = 332/346 (95%)
Query: 1 MDLGDNSKIKRARATNWPTVMSKFVLDWYLQXXXXXXXXXXXXXXHHHYCTTVLNARFET 60
MDLGDNSKIKRARATNWPTVMSKFVLDWYLQ HHHYCTTVLNARFET
Sbjct: 1 MDLGDNSKIKRARATNWPTVMSKFVLDWYLQKKKEMPPKTKFKKMHHHYCTTVLNARFET 60
Query: 61 TFTVDQVHRHFRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKP 120
TFTVDQVHRHFRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKP
Sbjct: 61 TFTVDQVHRHFRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKP 120
Query: 121 IPFFDHIQALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDK 180
IPFFDHIQALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDK
Sbjct: 121 IPFFDHIQALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDK 180
Query: 181 FVLEDEDDCHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTK 240
FVLEDEDDCHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTK
Sbjct: 181 FVLEDEDDCHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTK 240
Query: 241 TTPNPKPQAPVPHDGRKADMVKSTLAGIHDTPAKPIRAAPTSSDPNAPLWNMLKEIPLTP 300
TTPNPKPQAPVPHDGRKADMVKSTLAGIHDTPAKPIRAAPTSSDPNAPLWNMLKEIPLTP
Sbjct: 241 TTPNPKPQAPVPHDGRKADMVKSTLAGIHDTPAKPIRAAPTSSDPNAPLWNMLKEIPLTP 300
Query: 301 ADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPGSL 346
ADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPGSL
Sbjct: 301 ADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPGSL 346
>Os05g0203500 Conserved hypothetical protein
Length = 352
Score = 247 bits (631), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 152/348 (43%), Positives = 198/348 (56%), Gaps = 34/348 (9%)
Query: 11 RARATNWPTVMSKFVLDWYLQXXXXXXXXXXXXXXHHHYCTTVLNARFETTFTVDQVHRH 70
RA+ NWP +S+F+LDWY++ HH CT +N+++ TT+TVDQV H
Sbjct: 23 RAKPINWPLALSEFLLDWYIEKKLQLPPKAVIKKIHHTACTLAINSKYGTTYTVDQVQHH 82
Query: 71 FRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKPIPFFDHIQAL 130
+RR KE W++VAR++N SG+ +D+ KML L +TL +L I +R IL KPI FFD +Q L
Sbjct: 83 YRRHKENWSLVARHLNESGNGWDETTKMLTLSQATLDALLINDRGILSKPIQFFDKLQEL 142
Query: 131 FGEWSVDAAPVTDPIEAA--DINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDD 188
F S D A + DP AA D DD+ + D LN M+ AD + P G D DK D DD
Sbjct: 143 FSGCSADGAFMEDPSSAADFDDEDDEDDKFDFLNDMSTYADTKVPQGEDFDKLE-SDSDD 201
Query: 189 CHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTKTTPNP--- 245
C EVAA SA + Q S ST LKP K K + KT P
Sbjct: 202 CKEVAA------------LSAATIQVSS----STNYDLKPNKKNFKRCGKPKTLPQSHND 245
Query: 246 -------KPQAPVPHDGRKAD-MVKSTLAGIHDTPAKPIR-AAPTSSDPNAPLWNMLKEI 296
K A V HD D ++ +TL GI +T KPI+ AP DPN PLW+MLK+I
Sbjct: 246 KCNKTKAKSTAQV-HDSDDVDVLINNTLVGIKNTLEKPIQTVAP--QDPNIPLWDMLKKI 302
Query: 297 PLTPADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPG 344
L P D+L VG+ LCKPE + +RSF ++MG+EYLE W +KFLSG +P
Sbjct: 303 ALDPDDKLRVGLHLCKPELQANRSFLISMGQEYLEHWIYKFLSGDDPN 350
>Os08g0459400 Transposase, IS4 domain containing protein
Length = 705
Score = 191 bits (485), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 127/344 (36%), Positives = 170/344 (49%), Gaps = 67/344 (19%)
Query: 11 RARATNWPTVMSKFVLDWYLQXXXXXXXXXXXXXXHHHYCTTVLNARFETTFTVDQVHRH 70
R++ NWP S+F+LD Y++ HH CT+ +NA++ +T+ VDQ++
Sbjct: 418 RSKPINWPPAFSEFLLDCYIEKKLELPPKGVIKKMHHTACTSAINAKYGSTYNVDQIN-- 475
Query: 71 FRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKPIPFFDHIQAL 130
+R IL KPI FFD +Q L
Sbjct: 476 ------------------------------------------DRGILSKPIQFFDKLQEL 493
Query: 131 FGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDDCH 190
F S D A + DP AD DD+ + LD N M+ A+ + P G D DK + D DDC
Sbjct: 494 FSGSSADGAFMEDPSSVADF-DDEADELDTFNDMSTYAETKYPQGEDSDK-LEADSDDCK 551
Query: 191 EVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTKTTP---NPKP 247
EVAA + A + + S+ SG LKP K K + KT P N K
Sbjct: 552 EVAALNAATAALNAATSQVSSSHTSG---------LKPNKKSFKKCGKPKTLPQSHNDKG 602
Query: 248 QAPVP-----HDGRKAD-MVKSTLAGIHDTPAKPIR-AAPTSSDPNAPLWNMLKEIPLTP 300
+ HD D ++ STL GI D AKPI+ AAP DPNAPLW+MLK+I L P
Sbjct: 603 KLKAKSSSGLHDDDDIDVLITSTLVGIKDNLAKPIQTAAP--QDPNAPLWDMLKKIALEP 660
Query: 301 ADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFLSGGEPG 344
D++ VG+ LCKPEF+ HRSF ++MG+EYLE W +KFLSG + G
Sbjct: 661 EDKMRVGLHLCKPEFQAHRSFLISMGQEYLERWVYKFLSGDDTG 704
>Os05g0118600
Length = 319
Score = 118 bits (295), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 141/336 (41%), Gaps = 47/336 (13%)
Query: 11 RARATNWPTVMSKFVLDWYLQXXXXXXXXXXXXXXHHHYCTTVLNARFETTFTVDQVHRH 70
R R+ +W +KF+LDWY++ HH C LN F T QV RH
Sbjct: 17 RERSISWDDEQTKFMLDWYIEYKKDQHANFIWKSQHHMKCADALNKEFAMGVTSAQVTRH 76
Query: 71 FRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLASLPIAERAILVKPIPFFDHIQAL 130
+R +KE W IV +N SG+ FD L + S A+L +R +L KPI +F +Q L
Sbjct: 77 YRHYKENWKIVETALNKSGNGFDAIKCKLTISESEKATLKDRDRRLLSKPIKYFHEMQEL 136
Query: 131 FGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDDCH 190
F + D + D D++ N +D+ D +G L D
Sbjct: 137 FSGSNADGSLAMDQQTCCDVD--------------NKSDSSDDEG-------LND----- 170
Query: 191 EVAASSDAVPCEVMSDTS----APSAQPSGSFAESTMAALKPGLKKCKVVSRTKTTPNPK 246
SS A P ++ ++ S +P+ +GS S +P R +P+ K
Sbjct: 171 ---ISSYARPIDIAAEDSDTLPSPTCADNGSSGTSRAGKKRP---------RGSKSPSKK 218
Query: 247 PQAPVPHD--GRKADMVKSTLAGIHDTPAKPIRAAPTSS--DPNAPLWNMLKEIPLTPAD 302
Q P P + + + +T+ + D P P DP A LW + +P++ D
Sbjct: 219 QQ-PKPKNRFTDATEKISNTMDHLVDQLGNPPPPPPVPQFCDPYASLWKRIDALPISTND 277
Query: 303 RLSVGICLCKPEFEVHRSFFMNMGREYLEAWAHKFL 338
++ VG L + E E R F + +E W ++F+
Sbjct: 278 KVVVGNYLGRQENEGVRGFLASSADTTVETWVYQFM 313
>Os03g0141100 Conserved hypothetical protein
Length = 321
Score = 86.3 bits (212), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/336 (23%), Positives = 129/336 (38%), Gaps = 46/336 (13%)
Query: 5 DNSKI--KRARATNWPTVMSKFVLDWYLQXXXXXXXXXXXXXXHHHYCTTVLNARFETTF 62
DNSK R + W ++F+L+WY+ HH C T LN +
Sbjct: 7 DNSKEGGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRV 66
Query: 63 TVDQVHRHFRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLAS--LPIAERAILVKP 120
QVHRHFR KE W+ + + SG FD + PS + L + L KP
Sbjct: 67 NRSQVHRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGTTKYNYLTKP 126
Query: 121 IPFFDHIQALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDK 180
I FF + LF V + D +D + +L++
Sbjct: 127 IKFFHLFEELF----VGCSKA-----------DGSLAMDQFTANTSSDSDGSGSIKELEE 171
Query: 181 FVLEDEDDCHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTK 240
+ +D ++ SD +P +P+ + S G K+ V S TK
Sbjct: 172 YTFPLQDGGND----SDTIP------RYSPTTDATSS-----------GQKRKFVKSPTK 210
Query: 241 TTPNPKPQAPVPHDGRKADMVKSTLAGIHDTPAKPIRAA---PTSSDPNAPLWNMLKEIP 297
K H + +++ S L + + A+ P+ DPNA +W ++++
Sbjct: 211 KIVKHKTSR---HKAEEDELIASILRLANSLASAQSVASVEVPSVGDPNASIWKRIEDLT 267
Query: 298 LTPADRLSVGICLCKPEFEVHRSFFMNMGREYLEAW 333
+ +D++ + I L KPE E RS+ E +AW
Sbjct: 268 IPASDKIELAIFLTKPEQECFRSYLRVASDESFQAW 303
>Os03g0157450 Similar to Transposase (Fragment)
Length = 611
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 77/331 (23%), Positives = 126/331 (38%), Gaps = 46/331 (13%)
Query: 11 RARATNWPTVMSKFVLDWYLQXXXXXXXXXXXXXXHHHYCTTVLNARFETTFTVDQVHRH 70
R + +W ++F+L+WY++ HH C L +F T QVHRH
Sbjct: 310 REKYISWSDDATQFMLEWYIELRKDKPSTFKWKKQHHQQCAIALKDKFGIRVTKSQVHRH 369
Query: 71 FRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLAS--LPIAERAILVKPIPFFDHIQ 128
R KE W+ + + SG FD + PS S L + L KPI FF +
Sbjct: 370 LRLCKEKWSWICVALGKSGYGFDAASCKFNIDPSEKDSNKLGTTKYNYLTKPIKFFHLFE 429
Query: 129 ALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDD 188
LF S D +D N + +L++++ ED
Sbjct: 430 ELFVGCS---------------KADGSLAIDQFNANGSSDSDGSGSIKELEEYIFALEDG 474
Query: 189 CHEVAASSDAVPCEVMSDTSAPSA-QPSGSFAESTMAALKPGLKKCKVVSRTKTTPNPKP 247
H+ SDT A ++ G+++ G K+ V S TK T K
Sbjct: 475 GHD-------------SDTIARNSPTTDGTYS---------GHKRRSVKSPTKKTLKHK- 511
Query: 248 QAPVPHDGRKADMVKSTLAGIHDTPAKPIRAAPTSSDPNAPLWNMLKEIPLTPADRLSVG 307
H + D + ++ + + A DPNA +W ++++ + +D++ +
Sbjct: 512 ---TSHKEEEQDELAGSILKLANKLASV--EQSIVGDPNASIWRRIEDLTIPASDKIELA 566
Query: 308 ICLCKPEFEVHRSFFMNMGREYLEAWAHKFL 338
L KPE E+ RS+ +AW +L
Sbjct: 567 TFLAKPEQEIFRSYLRVASDASFQAWVIDYL 597
>Os05g0208600
Length = 736
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 128/337 (37%), Gaps = 46/337 (13%)
Query: 5 DNSK--IKRARATNWPTVMSKFVLDWYLQXXXXXXXXXXXXXXHHHYCTTVLNARFETTF 62
DNSK R + W ++F+L+WY+ HH C T LN +
Sbjct: 422 DNSKEGGSREKYITWSDDATQFMLEWYISLRKDKPTTFKWRKQHHQQCATALNDKLGLRV 481
Query: 63 TVDQVHRHFRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLAS--LPIAERAILVKP 120
QVHRHFR KE W+ + + SG FD + PS + L + L KP
Sbjct: 482 NRSQVHRHFRLCKEKWSWICAALGKSGYGFDATSCKFNIDPSEKEANKLGTTKYNYLTKP 541
Query: 121 IPFFDHIQALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDK 180
I FF + LF S D +D + +L++
Sbjct: 542 IKFFHLFEELFVGCS---------------KADGSLAMDQFTANTSSDSDGSGSIKELEE 586
Query: 181 FVLEDEDDCHEVAASSDAVPCEVMSDTSAPSAQPSGSFAESTMAALKPGLKKCKVVSRTK 240
+ +D ++ SD +P +P+ + S G K+ V S TK
Sbjct: 587 YTFPLQDGGND----SDTIP------RYSPTTDATSS-----------GQKRKFVKSPTK 625
Query: 241 TTPNPKPQAPVPHDGRKADMVKSTLAGIHDTPAKPIRAA---PTSSDPNAPLWNMLKEIP 297
K H + +++ S L + + A+ P+ DPNA +W ++++
Sbjct: 626 KIVKHKTSR---HKAEEDELIASILRLANSLASAQSVASVEVPSVGDPNASIWKRIEDLT 682
Query: 298 LTPADRLSVGICLCKPEFEVHRSFFMNMGREYLEAWA 334
+ +D++ + I L KPE E RS+ E +AW
Sbjct: 683 IPASDKIELAIFLTKPEQECFRSYLRVASDESFQAWV 719
>Os06g0210700
Length = 680
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 75/327 (22%), Positives = 125/327 (38%), Gaps = 46/327 (14%)
Query: 11 RARATNWPTVMSKFVLDWYLQXXXXXXXXXXXXXXHHHYCTTVLNARFETTFTVDQVHRH 70
R + +W ++F+L+WY++ HH C L +F T QVHRH
Sbjct: 379 REKYISWSDDATQFMLEWYIELCKDKPSTFKWKKQHHQQCAIALKDKFGIRVTKSQVHRH 438
Query: 71 FRRFKEVWNIVARYMNMSGSRFDKKHKMLILPPSTLAS--LPIAERAILVKPIPFFDHIQ 128
R KE W+ + + SG FD + PS S L + L KPI FF +
Sbjct: 439 LRLCKEKWSWICAALGKSGYGFDAASCKFNIDPSEKDSNKLGTTKYNYLTKPIKFFHPFE 498
Query: 129 ALFGEWSVDAAPVTDPIEAADINDDDMEILDPLNMMANCADARDPDGADLDKFVLEDEDD 188
LF S D +D N + +L++++ ED
Sbjct: 499 ELFIGCS---------------KADGSLAIDRFNANGSSDSDGSGSIKELEEYIFALEDG 543
Query: 189 CHEVAASSDAVPCEVMSDTSAPSAQPS-GSFAESTMAALKPGLKKCKVVSRTKTTPNPKP 247
H+ SDT A ++ + G+++ G K+ V S TK T K
Sbjct: 544 GHD-------------SDTIARNSPTTDGTYS---------GHKRRSVKSPTKKTLKHK- 580
Query: 248 QAPVPHDGRKADMVKSTLAGIHDTPAKPIRAAPTSSDPNAPLWNMLKEIPLTPADRLSVG 307
H + D + ++ + + A + PNA +W ++++ + +D++ +
Sbjct: 581 ---TSHKEEEQDELAGSILKLANKLA--LVEQSIVGGPNASIWRRIEDLTIPASDKIELA 635
Query: 308 ICLCKPEFEVHRSFFMNMGREYLEAWA 334
L KPE E+ RS+ +AW
Sbjct: 636 TFLAKPEQEIFRSYLRVASDASFQAWV 662
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.133 0.415
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,768,411
Number of extensions: 582751
Number of successful extensions: 2387
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 2376
Number of HSP's successfully gapped: 8
Length of query: 346
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 244
Effective length of database: 11,709,973
Effective search space: 2857233412
Effective search space used: 2857233412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 156 (64.7 bits)