BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0154600 Os05g0154600|AK111816
(436 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0154600 Similar to VIP2 protein 754 0.0
Os01g0350900 Similar to VIP2 protein 352 2e-97
Os08g0539300 Zinc finger, RING-type domain containing protein 157 1e-38
Os09g0511500 Zinc finger, RING-type domain containing protein 135 5e-32
>Os05g0154600 Similar to VIP2 protein
Length = 436
Score = 754 bits (1948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/407 (91%), Positives = 371/407 (91%)
Query: 30 VSCSICLDAVVAAGGERSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRKIEKGNWLYAN 89
VSCSICLDAVVAAGGERSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRKIEKGNWLYAN
Sbjct: 30 VSCSICLDAVVAAGGERSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRKIEKGNWLYAN 89
Query: 90 GSRPTQDVNMDEWAHDEDLYDVSYSEMPFRFHWCPFGRLAQLPSFFEEGESSPPVTFHDF 149
GSRPTQDVNMDEWAHDEDLYDVSYSEMPFRFHWCPFGRLAQLPSFFEEGESSPPVTFHDF
Sbjct: 90 GSRPTQDVNMDEWAHDEDLYDVSYSEMPFRFHWCPFGRLAQLPSFFEEGESSPPVTFHDF 149
Query: 150 MGQHMFTEHVAAVSSAPGAAHPCPYVAYXXXXXXXXXXXXXXVPERTMDGPAYHDPWHPL 209
MGQHMFTEHVAAVSSAPGAAHPCPYVAY VPERTMDGPAYHDPWHPL
Sbjct: 150 MGQHMFTEHVAAVSSAPGAAHPCPYVAYLHPLPSLASSSSSHVPERTMDGPAYHDPWHPL 209
Query: 210 AGPSDGRPLQSVQPADFHHNHWAHVPNSYPQPNNNNGVAEQQGVPFGTTRAARVDGDTQR 269
AGPSDGRPLQSVQPADFHHNHWAHVPNSYPQPNNNNGVAEQQGVPFGTTRAARVDGDTQR
Sbjct: 210 AGPSDGRPLQSVQPADFHHNHWAHVPNSYPQPNNNNGVAEQQGVPFGTTRAARVDGDTQR 269
Query: 270 RGSSISPSYFSNGSGSRSRAPNVPPMVPQFMRAHGXXXXXXXXXXXXXLFAGAHRSGGMR 329
RGSSISPSYFSNGSGSRSRAPNVPPMVPQFMRAHG LFAGAHRSGGMR
Sbjct: 270 RGSSISPSYFSNGSGSRSRAPNVPPMVPQFMRAHGSISEQYQQSSSSSLFAGAHRSGGMR 329
Query: 330 TAXXXXXXXXXAFCLFPPGSSGHNSMETDDAGGNRFYAWERDRFAPYPLMPVDCETNWWS 389
TA AFCLFPPGSSGHNSMETDDAGGNRFYAWERDRFAPYPLMPVDCETNWWS
Sbjct: 330 TAPPPPLPENPAFCLFPPGSSGHNSMETDDAGGNRFYAWERDRFAPYPLMPVDCETNWWS 389
Query: 390 SQQSHGTSEPAPAPRRLFGQWIGVGRSSPENRSPEGSSYRQMHTPRM 436
SQQSHGTSEPAPAPRRLFGQWIGVGRSSPENRSPEGSSYRQMHTPRM
Sbjct: 390 SQQSHGTSEPAPAPRRLFGQWIGVGRSSPENRSPEGSSYRQMHTPRM 436
>Os01g0350900 Similar to VIP2 protein
Length = 374
Score = 352 bits (904), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 171/259 (66%), Positives = 194/259 (74%), Gaps = 10/259 (3%)
Query: 30 VSCSICLDAVVAAGGERSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRKIEKGNWLYAN 89
V CSICLDAVVA GG+RSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCR+IE+GNWLYAN
Sbjct: 120 VPCSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYAN 179
Query: 90 GSRPTQDVNMDEWAHDEDLYDVSYSE------MPFRFHWCPFGRLAQLPSFFEEGESSPP 143
GSRP+QDV+ D+W HDED YD + E +PFRF WCP GRLAQLPS F+EGES+PP
Sbjct: 180 GSRPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGESAPP 239
Query: 144 VTFHDFMGQHMFTEHVAAVSSAPGAAHPCPYVAYXXXXXXXXXXXXXXVPERTMDGPAYH 203
VTFHDFMGQ+ +EH+ SAPGA P PY+AY V ERTMDG YH
Sbjct: 240 VTFHDFMGQNFTSEHLPV--SAPGATPPGPYIAYFQPLQSSASSSSSHVTERTMDGTTYH 297
Query: 204 DPWHPLAGPSDGRPLQSVQPADFHHNHWAHVPNSYPQPNNNNGVAEQQGVPFGTTRAARV 263
D W+PL GPSDGRPL +V P DFHHNHW H+PNSY QPN+NNGVAEQ +P R +
Sbjct: 298 DHWNPLPGPSDGRPLATVHPIDFHHNHWTHLPNSYSQPNSNNGVAEQMAIPVVPMRVGGL 357
Query: 264 DGDTQRRGSSISPSYFSNG 282
D D+Q+RGS PS + NG
Sbjct: 358 DSDSQQRGS--LPSVYGNG 374
>Os08g0539300 Zinc finger, RING-type domain containing protein
Length = 424
Score = 157 bits (398), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 83/147 (56%), Positives = 99/147 (67%), Gaps = 15/147 (10%)
Query: 30 VSCSICLDAVVAAGGERSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRKIEKGNWLYAN 89
SCSICLD VVA G RS ARLQCGHEFHLDCIGSAFNAKG MQCPNCRKIEKG WLYA+
Sbjct: 23 ASCSICLDPVVAGG--RSVARLQCGHEFHLDCIGSAFNAKGAMQCPNCRKIEKGRWLYAS 80
Query: 90 GSRPTQDVNMDEWAHDEDLYDVSYSEMPFRFHWCPFGRLAQLPSFFEEGESSPPVTFHDF 149
G P+ D+++ W E YD++ S++PF F WCPF QL S FEEGE+ T +
Sbjct: 81 GHHPSPDIDIGGWVTGE-TYDIT-SDIPFGFQWCPFSGFTQLASVFEEGEAE--QTSYHT 136
Query: 150 MGQHMFTEHVAAVSSAPGAAHPCPYVA 176
+G H S+A ++ CPY+A
Sbjct: 137 VGDH---------SNAASSSLVCPYLA 154
>Os09g0511500 Zinc finger, RING-type domain containing protein
Length = 404
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 77/146 (52%), Positives = 91/146 (62%), Gaps = 10/146 (6%)
Query: 32 CSICLDAVVAAGG--ERSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRKIEKGNWLYAN 89
CSICLDAV G RSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCR IEKG+WLY N
Sbjct: 27 CSICLDAVACGDGVAARSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRNIEKGHWLYGN 86
Query: 90 GSRPTQDVNMDEWAHDEDLYDVSYSEMPFRFHWCPFGRLAQLPSFFEEGESSPPVTFHDF 149
S+P + +W + E +D +S F F WCPF L S F E ES P F ++
Sbjct: 87 ESQPCSHSDTGDWLNGET-FDYPFS---FEFGWCPFN--TPLTSVFGESESE-PNPFLEY 139
Query: 150 MGQ-HMFTEHVAAVSSAPGAAHPCPY 174
+G H F + A SS+ + P+
Sbjct: 140 IGSLHGFHHPMYAPSSSTASTESIPF 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.318 0.134 0.448
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,691,253
Number of extensions: 780034
Number of successful extensions: 2012
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2004
Number of HSP's successfully gapped: 4
Length of query: 436
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 332
Effective length of database: 11,605,545
Effective search space: 3853040940
Effective search space used: 3853040940
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)