Os05g0154600
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to VIP2 protein.
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Os05g0154600 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to VIP2 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 13.77 | 0.174 | 13 | 0.339 | 0.676 | 0.00104 | -0.178 | 2.18 | -0.0122 | 3.18 | 25.24 | 4099 | -- | -- |
| 15.04 | 0.181 | 13 | -0.159 | 0.699 | 0.229 | -0.136 | -- | -0.0978 | 3.15 | 26.53 | 4863 | -- | -- |
| 13.87 | 0.173 | 13 | 0.34 | 0.676 | -0.00349 | -- | 2.17 | -0.0133 | 3.21 | 25.39 | 4106 | -- | -- |
| 14.9 | 0.18 | 13 | -0.2 | 0.675 | 0.261 | -- | -- | -0.228 | 3.17 | 30.8 | 19891 | -- | -- |
| 36.96 | 0.285 | 13 | 0.134 | -- | -0.618 | -- | 1.23 | -0.0317 | -- | 25.39 | 4106 | -- | -- |
| 16.52 | 0.191 | 13 | -0.0958 | 0.696 | -- | -0.0924 | -- | -0.111 | 3.18 | -- | -- | -- | -- |
| 16.55 | 0.191 | 13 | -0.0939 | 0.696 | -- | -- | -- | -0.111 | 3.18 | -- | -- | -- | -- |
| 36.6 | 0.283 | 13 | 0.0196 | -- | -0.546 | -- | -- | -0.0283 | -- | 23.8 | 14153 | -- | -- |
| 15.64 | 0.184 | 13 | -- | 0.684 | 0.195 | -- | -- | -0.174 | 3.2 | 32.2 | 18508 | -- | -- |
| 44.06 | 0.31 | 13 | -0.0643 | -- | -- | -- | -- | -0.0927 | -- | -- | -- | -- | -- |
| 16.78 | 0.192 | 13 | -- | 0.694 | -- | -- | -- | -0.1 | 3.18 | -- | -- | -- | -- |
| 36.61 | 0.283 | 13 | -- | -- | -0.543 | -- | -- | -0.0308 | -- | 23.8 | 14153 | -- | -- |
| 44.17 | 0.31 | 13 | -- | -- | -- | -- | -- | -0.0855 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 13.37 | temperature | 10 | 4320 | > th | dose dependent | rect. | 10 | 2 |
| 43 | 13.49 | temperature | 30 | 4320 | < th | dose dependent | rect. | 10 | 1 |
| 186 | 13.62 | temperature | 15 | 4320 | > th | dose dependent | sin | 22 | NA |
| 397 | 13.74 | temperature | 30 | 4320 | < th | dose dependent | rect. | 8 | 11 |
| 412 | 13.75 | temperature | 15 | 4320 | > th | dose dependent | rect. | 15 | 2 |
| 487 | 13.77 | temperature | 25 | 4320 | > th | dose dependent | rect. | 21 | 17 |
| 591 | 13.81 | temperature | 30 | 4320 | < th | dose dependent | sin | 22 | NA |
| 635 | 13.82 | temperature | 25 | 4320 | > th | dose dependent | sin | 7 | NA |
| 641 | 13.82 | temperature | 25 | 4320 | > th | dose dependent | no | NA | NA |
| 791 | 13.83 | temperature | 25 | 4320 | > th | dose dependent | rect. | 2 | 22 |