Os01g0350900
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to VIP2 protein.
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Os01g0350900 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to VIP2 protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 11.53 | 0.16 | 12.7 | 0.494 | 0.916 | 0.687 | 0.209 | -0.515 | 0.182 | 5.53 | 29.69 | 241 | -- | -- |
| 11.77 | 0.16 | 12.8 | 0.414 | 0.913 | 0.703 | 0.054 | -- | 0.168 | 5.51 | 29.19 | 252 | -- | -- |
| 11.62 | 0.159 | 12.7 | 0.478 | 0.925 | 0.681 | -- | -0.434 | 0.176 | 5.51 | 29.64 | 240 | -- | -- |
| 11.78 | 0.16 | 12.8 | 0.406 | 0.915 | 0.692 | -- | -- | 0.162 | 5.51 | 29.26 | 251 | -- | -- |
| 42.85 | 0.305 | 12.7 | 0.647 | -- | 1.58 | -- | -0.264 | 0.303 | -- | 32.44 | 276 | -- | -- |
| 18.2 | 0.2 | 12.8 | 0.23 | 1.12 | -- | 0.121 | -- | 0.0181 | 5.29 | -- | -- | -- | -- |
| 18.24 | 0.2 | 12.8 | 0.23 | 1.12 | -- | -- | -- | 0.0175 | 5.28 | -- | -- | -- | -- |
| 42.91 | 0.305 | 12.7 | 0.615 | -- | 1.56 | -- | -- | 0.293 | -- | 32.05 | 283 | -- | -- |
| 15.64 | 0.184 | 12.8 | -- | 0.97 | 0.523 | -- | -- | 0.0864 | 5.43 | 29.47 | 253 | -- | -- |
| 83.45 | 0.427 | 12.8 | 0.269 | -- | -- | -- | -- | 0.0454 | -- | -- | -- | -- | -- |
| 19.64 | 0.207 | 12.8 | -- | 1.12 | -- | -- | -- | -0.00813 | 5.28 | -- | -- | -- | -- |
| 52.09 | 0.336 | 12.8 | -- | -- | 1.4 | -- | -- | 0.186 | -- | 33.22 | 279 | -- | -- |
| 85.35 | 0.431 | 12.8 | -- | -- | -- | -- | -- | 0.0156 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 10.91 | temperature | 30 | 270 | < th | dose dependent | rect. | 1 | 22 |
| 2 | 11.05 | temperature | 10 | 270 | > th | dose dependent | rect. | 5 | 23 |
| 20 | 11.46 | temperature | 30 | 270 | < th | dose dependent | rect. | 9 | 23 |
| 24 | 11.50 | temperature | 15 | 270 | > th | dose dependent | rect. | 19 | 23 |
| 32 | 11.58 | temperature | 30 | 270 | < th | dose dependent | no | NA | NA |
| 33 | 11.58 | temperature | 30 | 270 | < th | dose dependent | rect. | 14 | 23 |
| 105 | 11.93 | temperature | 15 | 90 | > th | dose dependent | no | NA | NA |
| 119 | 11.98 | temperature | 20 | 1440 | > th | dose independent | rect. | 20 | 16 |
| 123 | 11.99 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 15 |
| 127 | 12.00 | temperature | 20 | 1440 | > th | dose independent | rect. | 23 | 13 |
| 144 | 12.02 | temperature | 20 | 1440 | < th | dose independent | rect. | 20 | 16 |
| 155 | 12.03 | temperature | 20 | 1440 | < th | dose independent | rect. | 23 | 13 |
| 161 | 12.03 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 15 |
| 171 | 12.04 | temperature | 15 | 1440 | > th | dose dependent | rect. | 20 | 6 |
| 189 | 12.05 | temperature | 15 | 1440 | > th | dose dependent | sin | 9 | NA |
| 191 | 12.05 | temperature | 25 | 1440 | < th | dose dependent | rect. | 24 | 1 |
| 208 | 12.06 | temperature | 20 | 1440 | > th | dose independent | sin | 7 | NA |
| 211 | 12.06 | temperature | 25 | 1440 | < th | dose dependent | rect. | 23 | 3 |
| 278 | 12.09 | temperature | 20 | 1440 | < th | dose independent | sin | 7 | NA |
| 285 | 12.09 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 317 | 12.10 | temperature | 20 | 1440 | > th | dose dependent | rect. | 7 | 4 |
| 349 | 12.11 | temperature | 20 | 270 | > th | dose independent | rect. | 21 | 21 |
| 648 | 12.19 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 4 |
| 737 | 12.21 | temperature | 30 | 1440 | < th | dose dependent | rect. | 7 | 1 |
| 825 | 12.23 | temperature | 30 | 1440 | < th | dose dependent | rect. | 20 | 1 |
| 960 | 12.26 | temperature | 15 | 1440 | > th | dose dependent | rect. | 1 | 1 |