BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0350900 Os01g0350900|AK070217
(374 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G05545.1 | chr3:1609436-1612133 FORWARD LENGTH=426 154 8e-38
AT2G47700.1 | chr2:19552506-19554351 REVERSE LENGTH=359 140 1e-33
AT4G13490.1 | chr4:7839137-7840284 REVERSE LENGTH=227 84 2e-16
AT2G15260.1 | chr2:6630528-6634008 FORWARD LENGTH=363 79 5e-15
>AT3G05545.1 | chr3:1609436-1612133 FORWARD LENGTH=426
Length = 425
Score = 154 bits (389), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 89/208 (42%), Positives = 116/208 (55%), Gaps = 12/208 (5%)
Query: 120 VPCSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYAN 179
V CSICL+ VV G DR+ A LQC H+FHLDCIGSAFNAKGVMQCPNCR++E+G WLYAN
Sbjct: 35 VACSICLETVVKNG-DRAWANLQCDHQFHLDCIGSAFNAKGVMQCPNCRKVEKGQWLYAN 93
Query: 180 GSRPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGESAPP 239
G R + + +DW H+ED YD + F WCP G A+LPS F++GE + P
Sbjct: 94 GCRSYPEFNVEDWVHEEDIYDIGAYSE-----MSFGVHWCPFGSSARLPS-FEDGEFS-P 146
Query: 240 VTFHDFMGQNFTSEHLPVSAPGATPPGPYIAYFQPLQXXXXXXXXHVTERTMDGTTYHDH 299
++HD +GQ + +AP A P PY+ YF P+ + H
Sbjct: 147 SSYHDLLGQQ--GYYTEPAAPTAGHPCPYVTYFGPVHSPSSSSGGAAGVSDSSSFS--SH 202
Query: 300 WNPLPGPSDGRPLATVHPIDFHHNHWTH 327
WN S P P+D H++ W +
Sbjct: 203 WNTGSSVSGEVPTPYGFPVDPHYHGWDY 230
>AT2G47700.1 | chr2:19552506-19554351 REVERSE LENGTH=359
Length = 358
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 81/184 (44%), Positives = 101/184 (54%), Gaps = 28/184 (15%)
Query: 120 VPCSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYAN 179
V CSICL++V+ G RS A+LQCGH+FHLDCIGSAFN KG MQCPNCR +E+G WLYAN
Sbjct: 36 VSCSICLESVL-DDGTRSKAKLQCGHQFHLDCIGSAFNMKGAMQCPNCRNVEKGQWLYAN 94
Query: 180 GS-RPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGESAP 238
GS RP + S +DW +ED Y + PE + +R WCP G L+Q + F+E E A
Sbjct: 95 GSTRPFPEFSMEDWIPEEDLYGLSYPE------MQYRVHWCPFGELSQAAASFEELEPAT 148
Query: 239 PVTFHDFMGQNFTSEHLPVSAPGATPPGPYIAYFQPLQXXXXXXXXHVTERTMDGTTYHD 298
+F G + A Y+AY P T RT D + D
Sbjct: 149 TTYHTEFHGHH-----------AAAVNHSYLAYVGPGPA--------ATPRTSDNNSTDD 189
Query: 299 H-WN 301
H WN
Sbjct: 190 HPWN 193
>AT4G13490.1 | chr4:7839137-7840284 REVERSE LENGTH=227
Length = 226
Score = 83.6 bits (205), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)
Query: 122 CSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYANGS 181
C++CL+ + +R+ +L+C H+FHLDC+GS+FN K M+CP CRQIE+G WL+A
Sbjct: 22 CAVCLEPLANDADERTVVKLRCSHKFHLDCVGSSFNIKNKMECPCCRQIEKGKWLFA--- 78
Query: 182 RPSQDVSNDDWG 193
P + DD
Sbjct: 79 EPVDQLEEDDMS 90
>AT2G15260.1 | chr2:6630528-6634008 FORWARD LENGTH=363
Length = 362
Score = 78.6 bits (192), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 45/61 (73%), Gaps = 1/61 (1%)
Query: 122 CSICLDAVV-AGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYANG 180
CSIC A+V R+ L+C H+FHLDCIGSA+NAKG M+CPNCR IE G+W +++G
Sbjct: 123 CSICRGALVNENDVQRTLVTLKCVHKFHLDCIGSAYNAKGFMECPNCRNIEPGHWQFSDG 182
Query: 181 S 181
+
Sbjct: 183 T 183
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.317 0.136 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 7,227,563
Number of extensions: 310859
Number of successful extensions: 928
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 932
Number of HSP's successfully gapped: 4
Length of query: 374
Length of database: 11,106,569
Length adjustment: 100
Effective length of query: 274
Effective length of database: 8,364,969
Effective search space: 2292001506
Effective search space used: 2292001506
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)