BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0350900 Os01g0350900|AK070217
(374 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0350900 Similar to VIP2 protein 541 e-154
Os05g0154600 Similar to VIP2 protein 355 3e-98
Os08g0539300 Zinc finger, RING-type domain containing protein 144 1e-34
Os09g0511500 Zinc finger, RING-type domain containing protein 133 2e-31
>Os01g0350900 Similar to VIP2 protein
Length = 374
Score = 541 bits (1393), Expect = e-154, Method: Compositional matrix adjust.
Identities = 276/374 (73%), Positives = 276/374 (73%)
Query: 1 VDGHGADSQQESVAVGGNETVXXXXXXXXXXXXXXXXXXXXXXXXXXTPFALYREXXXXX 60
VDGHGADSQQESVAVGGNETV TPFALYRE
Sbjct: 1 VDGHGADSQQESVAVGGNETVAAPAREIGAPGRRGAGAGGRVFFVGGTPFALYREGSAGR 60
Query: 61 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXV 120
V
Sbjct: 61 GVVGNAASAAGMGAEEEEEPASAVGREGGGGGGGARAAGAGAGGDTADDDDSGESAAAVV 120
Query: 121 PCSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYANG 180
PCSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYANG
Sbjct: 121 PCSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYANG 180
Query: 181 SRPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGESAPPV 240
SRPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGESAPPV
Sbjct: 181 SRPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGESAPPV 240
Query: 241 TFHDFMGQNFTSEHLPVSAPGATPPGPYIAYFQPLQXXXXXXXXHVTERTMDGTTYHDHW 300
TFHDFMGQNFTSEHLPVSAPGATPPGPYIAYFQPLQ HVTERTMDGTTYHDHW
Sbjct: 241 TFHDFMGQNFTSEHLPVSAPGATPPGPYIAYFQPLQSSASSSSSHVTERTMDGTTYHDHW 300
Query: 301 NPLPGPSDGRPLATVHPIDFHHNHWTHLPNSYSQPNSNNGVAEQMAIPVVPMRVGGLDSD 360
NPLPGPSDGRPLATVHPIDFHHNHWTHLPNSYSQPNSNNGVAEQMAIPVVPMRVGGLDSD
Sbjct: 301 NPLPGPSDGRPLATVHPIDFHHNHWTHLPNSYSQPNSNNGVAEQMAIPVVPMRVGGLDSD 360
Query: 361 SQQRGSLPSVYGNG 374
SQQRGSLPSVYGNG
Sbjct: 361 SQQRGSLPSVYGNG 374
>Os05g0154600 Similar to VIP2 protein
Length = 436
Score = 355 bits (911), Expect = 3e-98, Method: Compositional matrix adjust.
Identities = 174/259 (67%), Positives = 197/259 (76%), Gaps = 10/259 (3%)
Query: 120 VPCSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYAN 179
V CSICLDAVVA GG+RSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCR+IE+GNWLYAN
Sbjct: 30 VSCSICLDAVVAAGGERSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRKIEKGNWLYAN 89
Query: 180 GSRPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGESAPP 239
GSRP+QDV+ D+W HDED YD + E +PFRF WCP GRLAQLPS F+EGES+PP
Sbjct: 90 GSRPTQDVNMDEWAHDEDLYDVSYSE------MPFRFHWCPFGRLAQLPSFFEEGESSPP 143
Query: 240 VTFHDFMGQNFTSEHLPV--SAPGATPPGPYIAYFQPLQXXXXXXXXHVTERTMDGTTYH 297
VTFHDFMGQ+ +EH+ SAPGA P PY+AY PL HV ERTMDG YH
Sbjct: 144 VTFHDFMGQHMFTEHVAAVSSAPGAAHPCPYVAYLHPLPSLASSSSSHVPERTMDGPAYH 203
Query: 298 DHWNPLPGPSDGRPLATVHPIDFHHNHWTHLPNSYSQPNSNNGVAEQMAIPVVPMRVGGL 357
D W+PL GPSDGRPL +V P DFHHNHW H+PNSY QPN+NNGVAEQ +P R +
Sbjct: 204 DPWHPLAGPSDGRPLQSVQPADFHHNHWAHVPNSYPQPNNNNGVAEQQGVPFGTTRAARV 263
Query: 358 DSDSQQRGS--LPSVYGNG 374
D D+Q+RGS PS + NG
Sbjct: 264 DGDTQRRGSSISPSYFSNG 282
>Os08g0539300 Zinc finger, RING-type domain containing protein
Length = 424
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 79/115 (68%), Gaps = 10/115 (8%)
Query: 122 CSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYANGS 181
CSICLD VVAGG RS ARLQCGHEFHLDCIGSAFNAKG MQCPNCR+IE+G WLYA+G
Sbjct: 25 CSICLDPVVAGG--RSVARLQCGHEFHLDCIGSAFNAKGAMQCPNCRKIEKGRWLYASGH 82
Query: 182 RPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGES 236
PS D+ W E YD +PF FQWCP QL SVF+EGE+
Sbjct: 83 HPSPDIDIGGWVTGET-YDITSD-------IPFGFQWCPFSGFTQLASVFEEGEA 129
>Os09g0511500 Zinc finger, RING-type domain containing protein
Length = 404
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 76/144 (52%), Positives = 88/144 (61%), Gaps = 16/144 (11%)
Query: 122 CSICLDAVVAGGG--DRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYAN 179
CSICLDAV G G RSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCR IE+G+WLY N
Sbjct: 27 CSICLDAVACGDGVAARSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRNIEKGHWLYGN 86
Query: 180 GSRPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGESAPP 239
S+P DW + E F + P F F WCP L SVF E ES P
Sbjct: 87 ESQPCSHSDTGDWLNGETF---DYP-------FSFEFGWCPFN--TPLTSVFGESESE-P 133
Query: 240 VTFHDFMGQNFTSEHLPVSAPGAT 263
F +++G + H P+ AP ++
Sbjct: 134 NPFLEYIG-SLHGFHHPMYAPSSS 156
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.136 0.445
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,218,792
Number of extensions: 540996
Number of successful extensions: 1510
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 1505
Number of HSP's successfully gapped: 4
Length of query: 374
Length of database: 17,035,801
Length adjustment: 102
Effective length of query: 272
Effective length of database: 11,709,973
Effective search space: 3185112656
Effective search space used: 3185112656
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 157 (65.1 bits)