Os08g0539300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RING-type domain containing protein.
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Os08g0539300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RING-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 14.39 | 0.178 | 10.2 | -0.244 | 0.421 | -0.976 | -0.31 | -0.094 | 0.0582 | 1.17 | 24.57 | 2950 | -- | -- |
| 14.39 | 0.177 | 10.2 | -0.26 | 0.419 | -0.962 | -0.308 | -- | 0.0553 | 1.16 | 24.74 | 2943 | -- | -- |
| 14.78 | 0.179 | 10.2 | -0.237 | 0.42 | -0.977 | -- | -0.0798 | 0.059 | 1.12 | 24.53 | 2939 | -- | -- |
| 14.79 | 0.179 | 10.2 | -0.25 | 0.42 | -0.964 | -- | -- | 0.0557 | 1.11 | 24.66 | 2936 | -- | -- |
| 22.73 | 0.222 | 10.2 | -0.318 | -- | -0.968 | -- | 0.494 | 0.0362 | -- | 29.46 | 2477 | -- | -- |
| 29.49 | 0.255 | 10.1 | 0.159 | 0.454 | -- | -0.34 | -- | 0.3 | 1.39 | -- | -- | -- | -- |
| 29.95 | 0.256 | 10.1 | 0.17 | 0.454 | -- | -- | -- | 0.302 | 1.32 | -- | -- | -- | -- |
| 22.92 | 0.223 | 10.2 | -0.227 | -- | -1 | -- | -- | 0.0507 | -- | 27.6 | 2483 | -- | -- |
| 15.95 | 0.186 | 10.2 | -- | 0.4 | -0.828 | -- | -- | 0.11 | 1.09 | 25.34 | 2775 | -- | -- |
| 42.64 | 0.305 | 10.1 | 0.188 | -- | -- | -- | -- | 0.312 | -- | -- | -- | -- | -- |
| 30.72 | 0.259 | 10.1 | -- | 0.457 | -- | -- | -- | 0.283 | 1.34 | -- | -- | -- | -- |
| 23.99 | 0.228 | 10.2 | -- | -- | -0.892 | -- | -- | 0.1 | -- | 28.45 | 2477 | -- | -- |
| 43.57 | 0.308 | 10.1 | -- | -- | -- | -- | -- | 0.291 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 14.39 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 11 |
| 2 | 14.39 | temperature | 30 | 1440 | < th | dose dependent | rect. | 22 | 11 |
| 18 | 14.46 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 3 |
| 23 | 14.47 | temperature | 25 | 1440 | < th | dose dependent | rect. | 22 | 5 |
| 32 | 14.48 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 8 |
| 36 | 14.49 | temperature | 10 | 1440 | > th | dose dependent | sin | 8 | NA |
| 59 | 14.52 | temperature | 30 | 1440 | < th | dose dependent | sin | 9 | NA |
| 226 | 14.67 | temperature | 10 | 1440 | > th | dose dependent | rect. | 21 | 7 |
| 338 | 14.77 | temperature | 10 | 1440 | > th | dose dependent | rect. | 22 | 3 |
| 347 | 14.78 | temperature | 10 | 1440 | > th | dose dependent | rect. | 5 | 3 |
| 349 | 14.78 | temperature | 30 | 1440 | < th | dose dependent | rect. | 5 | 3 |
| 640 | 15.01 | temperature | 10 | 1440 | > th | dose dependent | rect. | 1 | 3 |
| 675 | 15.03 | temperature | 25 | 4320 | < th | dose dependent | rect. | 11 | 17 |
| 690 | 15.04 | temperature | 25 | 4320 | < th | dose dependent | rect. | 13 | 15 |
| 925 | 15.15 | temperature | 25 | 4320 | < th | dose dependent | no | NA | NA |
| 984 | 15.16 | temperature | 25 | 4320 | < th | dose dependent | rect. | 1 | 23 |