BLASTP 2.2.23 [Feb-03-2010]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Os08g0539300 Os08g0539300|AK067119
         (424 letters)

Database: tair10 
           27,416 sequences; 11,106,569 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G05545.1  | chr3:1609436-1612133 FORWARD LENGTH=426            134   1e-31
AT2G47700.1  | chr2:19552506-19554351 REVERSE LENGTH=359          133   1e-31
AT4G13490.1  | chr4:7839137-7840284 REVERSE LENGTH=227             86   4e-17
AT2G15260.1  | chr2:6630528-6634008 FORWARD LENGTH=363             80   1e-15

>AT3G05545.1 | chr3:1609436-1612133 FORWARD LENGTH=426
          Length = 425

 Score =  134 bits (336), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/119 (56%), Positives = 83/119 (69%), Gaps = 5/119 (4%)

Query: 23  ASCSICLDPVVAGG-RSVARLQCGHEFHLDCIGSAFNAKGAMQCPNCRKIEKGRWLYASG 81
            +CSICL+ VV  G R+ A LQC H+FHLDCIGSAFNAKG MQCPNCRK+EKG+WLYA+G
Sbjct: 35  VACSICLETVVKNGDRAWANLQCDHQFHLDCIGSAFNAKGVMQCPNCRKVEKGQWLYANG 94

Query: 82  HHPSPDIDIGGWVTGE-TYDI--TSDIPFGFQWCPFSGFTQLASVFEEGEAEQTSYHTV 137
               P+ ++  WV  E  YDI   S++ FG  WCPF    +L S FE+GE   +SYH +
Sbjct: 95  CRSYPEFNVEDWVHEEDIYDIGAYSEMSFGVHWCPFGSSARLPS-FEDGEFSPSSYHDL 152



>AT2G47700.1 | chr2:19552506-19554351 REVERSE LENGTH=359
          Length = 358

 Score =  133 bits (335), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 92/141 (65%), Gaps = 10/141 (7%)

Query: 23  ASCSICLDPVVAGG-RSVARLQCGHEFHLDCIGSAFNAKGAMQCPNCRKIEKGRWLYASG 81
            SCSICL+ V+  G RS A+LQCGH+FHLDCIGSAFN KGAMQCPNCR +EKG+WLYA+G
Sbjct: 36  VSCSICLESVLDDGTRSKAKLQCGHQFHLDCIGSAFNMKGAMQCPNCRNVEKGQWLYANG 95

Query: 82  H-HPSPDIDIGGWVTGE-TYDITS-DIPFGFQWCPFSGFTQLASVFEEGEAEQTSYHTV- 137
              P P+  +  W+  E  Y ++  ++ +   WCPF   +Q A+ FEE E   T+YHT  
Sbjct: 96  STRPFPEFSMEDWIPEEDLYGLSYPEMQYRVHWCPFGELSQAAASFEELEPATTTYHTEF 155

Query: 138 -GDHSNAASSSLVCPYLALRG 157
            G H+ A + S    YLA  G
Sbjct: 156 HGHHAAAVNHS----YLAYVG 172



>AT4G13490.1 | chr4:7839137-7840284 REVERSE LENGTH=227
          Length = 226

 Score = 85.9 bits (211), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 32/57 (56%), Positives = 46/57 (80%), Gaps = 2/57 (3%)

Query: 25 CSICLDPVV--AGGRSVARLQCGHEFHLDCIGSAFNAKGAMQCPNCRKIEKGRWLYA 79
          C++CL+P+   A  R+V +L+C H+FHLDC+GS+FN K  M+CP CR+IEKG+WL+A
Sbjct: 22 CAVCLEPLANDADERTVVKLRCSHKFHLDCVGSSFNIKNKMECPCCRQIEKGKWLFA 78



>AT2G15260.1 | chr2:6630528-6634008 FORWARD LENGTH=363
          Length = 362

 Score = 80.5 bits (197), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 46/66 (69%), Gaps = 3/66 (4%)

Query: 25  CSICLDPVVAGG---RSVARLQCGHEFHLDCIGSAFNAKGAMQCPNCRKIEKGRWLYASG 81
           CSIC   +V      R++  L+C H+FHLDCIGSA+NAKG M+CPNCR IE G W ++ G
Sbjct: 123 CSICRGALVNENDVQRTLVTLKCVHKFHLDCIGSAYNAKGFMECPNCRNIEPGHWQFSDG 182

Query: 82  HHPSPD 87
            H +P+
Sbjct: 183 THFNPN 188



  Database: tair10
    Posted date:  Dec 8, 2010 11:30 AM
  Number of letters in database: 11,106,569
  Number of sequences in database:  27,416
  
Lambda     K      H
   0.319    0.135    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 9,791,778
Number of extensions: 430604
Number of successful extensions: 1206
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 1233
Number of HSP's successfully gapped: 4
Length of query: 424
Length of database: 11,106,569
Length adjustment: 101
Effective length of query: 323
Effective length of database: 8,337,553
Effective search space: 2693029619
Effective search space used: 2693029619
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 113 (48.1 bits)