BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os08g0539300 Os08g0539300|AK067119
(424 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os08g0539300 Zinc finger, RING-type domain containing protein 783 0.0
Os09g0511500 Zinc finger, RING-type domain containing protein 301 7e-82
Os01g0350900 Similar to VIP2 protein 144 1e-34
>Os08g0539300 Zinc finger, RING-type domain containing protein
Length = 424
Score = 783 bits (2021), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/424 (90%), Positives = 385/424 (90%)
Query: 1 MDLERSXXXXXXXXXXXXXXXXASCSICLDPVVAGGRSVARLQCGHEFHLDCIGSAFNAK 60
MDLERS ASCSICLDPVVAGGRSVARLQCGHEFHLDCIGSAFNAK
Sbjct: 1 MDLERSPPPPPPEGGGGGGGGGASCSICLDPVVAGGRSVARLQCGHEFHLDCIGSAFNAK 60
Query: 61 GAMQCPNCRKIEKGRWLYASGHHPSPDIDIGGWVTGETYDITSDIPFGFQWCPFSGFTQL 120
GAMQCPNCRKIEKGRWLYASGHHPSPDIDIGGWVTGETYDITSDIPFGFQWCPFSGFTQL
Sbjct: 61 GAMQCPNCRKIEKGRWLYASGHHPSPDIDIGGWVTGETYDITSDIPFGFQWCPFSGFTQL 120
Query: 121 ASVFEEGEAEQTSYHTVGDHSNAASSSLVCPYLALRGFLXXXXXXXXXXXXXXXXXFHRH 180
ASVFEEGEAEQTSYHTVGDHSNAASSSLVCPYLALRGFL FHRH
Sbjct: 121 ASVFEEGEAEQTSYHTVGDHSNAASSSLVCPYLALRGFLHPVHVPSSSSSGAENSSFHRH 180
Query: 181 PTSLEGHAAHDLSNTQVFHATESRNHDNDHRYMSNLPVSGIPDHSVAPFGIGLPRYDSSS 240
PTSLEGHAAHDLSNTQVFHATESRNHDNDHRYMSNLPVSGIPDHSVAPFGIGLPRYDSSS
Sbjct: 181 PTSLEGHAAHDLSNTQVFHATESRNHDNDHRYMSNLPVSGIPDHSVAPFGIGLPRYDSSS 240
Query: 241 QQRTRPYAHHRPLVHRPTPRNGSNMVTPLGSVPAVMAETRGHGHGARGHMYQQSMHSLQS 300
QQRTRPYAHHRPLVHRPTPRNGSNMVTPLGSVPAVMAETRGHGHGARGHMYQQSMHSLQS
Sbjct: 241 QQRTRPYAHHRPLVHRPTPRNGSNMVTPLGSVPAVMAETRGHGHGARGHMYQQSMHSLQS 300
Query: 301 SPFPPTSRRVRPRALTITSFIXXXXXXEIGGHHGFAPPVNRSNSSDGEAVSRPVDRPYGW 360
SPFPPTSRRVRPRALTITSFI EIGGHHGFAPPVNRSNSSDGEAVSRPVDRPYGW
Sbjct: 301 SPFPPTSRRVRPRALTITSFIAASSSAEIGGHHGFAPPVNRSNSSDGEAVSRPVDRPYGW 360
Query: 361 GQEGFTPFPWIPADGESHWWGTFNPMQNHTHGGFTRRPTGERMPQSHPDSGYHSMHPQRM 420
GQEGFTPFPWIPADGESHWWGTFNPMQNHTHGGFTRRPTGERMPQSHPDSGYHSMHPQRM
Sbjct: 361 GQEGFTPFPWIPADGESHWWGTFNPMQNHTHGGFTRRPTGERMPQSHPDSGYHSMHPQRM 420
Query: 421 PPFL 424
PPFL
Sbjct: 421 PPFL 424
>Os09g0511500 Zinc finger, RING-type domain containing protein
Length = 404
Score = 301 bits (771), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 174/389 (44%), Positives = 213/389 (54%), Gaps = 36/389 (9%)
Query: 25 CSICLDPVVAG----GRSVARLQCGHEFHLDCIGSAFNAKGAMQCPNCRKIEKGRWLYAS 80
CSICLD V G RS ARLQCGHEFHLDCIGSAFNAKG MQCPNCR IEKG WLY +
Sbjct: 27 CSICLDAVACGDGVAARSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRNIEKGHWLYGN 86
Query: 81 GHHPSPDIDIGGWVTGETYDITSDIPFGFQWCPFSGFTQLASVFEEGEAEQTSYHTVGDH 140
P D G W+ GET+D FG WCPF+ T L SVF E E+E +
Sbjct: 87 ESQPCSHSDTGDWLNGETFDYPFSFEFG--WCPFN--TPLTSVFGESESEPNPF------ 136
Query: 141 SNAASSSLVCPYL-ALRGFLXXXXXXXXXXXXXXXXXFHRHPTSLEGHAAHDLSNTQVFH 199
Y+ +L GF FH+ PT EGHA DL NTQVF+
Sbjct: 137 ---------LEYIGSLHGFHHPMYAPSSSTASTESIPFHQRPTGTEGHATTDLRNTQVFN 187
Query: 200 ATESRNHDNDHRYMSNLPVSGIPDHSVAPFGIGLPRYDSSSQQRTRPYAHHRPLVHRPTP 259
+E RNH+ + +Y+ ++ + G +HS APFGIG+PRYD +QQR RP+ H L HRPT
Sbjct: 188 ESEPRNHEREQQYLGSVQMPGTLNHSTAPFGIGMPRYDGGNQQRLRPHMHDNSLFHRPTA 247
Query: 260 RNGSNMVTPLGSVPAVMAETRGHGHGARGHMYQQSM-HSLQSSPFPPTSRRVRPRALTIT 318
R SN+ L S+ A +ETRGHGHG H QQ++ S+ S+P PP +RRVRPRAL+IT
Sbjct: 248 RRASNLAH-LRSLTAA-SETRGHGHGMTSHAVQQTIPSSMASNPQPPATRRVRPRALSIT 305
Query: 319 SFIXXXXXXEIGGHHGF----APPVNRSNSSDGEAVSRPVDRPYGWGQEGFTPFPWIPAD 374
SFI EI H F N +G R ++ Y W E F W P
Sbjct: 306 SFIAASSSAEIRAPHDFPLTETASTTNGNIRNGVGAPRHANQSYSWSSETF----W-PQT 360
Query: 375 GESHWWGTFNPMQNHTHGGFTRRPTGERM 403
GE HWW P+ N ++ F+ R E +
Sbjct: 361 GEPHWWSPMAPVHNRSYDNFSGRSATELL 389
>Os01g0350900 Similar to VIP2 protein
Length = 374
Score = 144 bits (363), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 72/115 (62%), Positives = 79/115 (68%), Gaps = 10/115 (8%)
Query: 25 CSICLDPVVAGG--RSVARLQCGHEFHLDCIGSAFNAKGAMQCPNCRKIEKGRWLYASGH 82
CSICLD VVAGG RS ARLQCGHEFHLDCIGSAFNAKG MQCPNCR+IE+G WLYA+G
Sbjct: 122 CSICLDAVVAGGGDRSTARLQCGHEFHLDCIGSAFNAKGVMQCPNCRQIERGNWLYANGS 181
Query: 83 HPSPDIDIGGWVTGET-YDITSD-------IPFGFQWCPFSGFTQLASVFEEGEA 129
PS D+ W E YD +PF FQWCP QL SVF+EGE+
Sbjct: 182 RPSQDVSNDDWGHDEDFYDANQPETSRSVFLPFRFQWCPIGRLAQLPSVFDEGES 236
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.319 0.135 0.447
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,624,048
Number of extensions: 777690
Number of successful extensions: 2150
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2139
Number of HSP's successfully gapped: 4
Length of query: 424
Length of database: 17,035,801
Length adjustment: 104
Effective length of query: 320
Effective length of database: 11,605,545
Effective search space: 3713774400
Effective search space used: 3713774400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 157 (65.1 bits)