BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0133900 Os05g0133900|AK067302
(667 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0133900 Similar to Shaggy-related protein kinase eta (... 1339 0.0
Os03g0110800 Similar to DNA methyltransferase 285 1e-76
Os12g0108900 UBA-like domain containing protein 177 3e-44
Os11g0109200 C-5 cytosine-specific DNA methylase family pro... 104 2e-22
>Os05g0133900 Similar to Shaggy-related protein kinase eta (EC 2.7.1.-) (ASK-eta)
(BRASSINOSTEROID-INSENSITIVE 2) (ULTRACURVATA1)
Length = 667
Score = 1339 bits (3465), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 650/667 (97%), Positives = 650/667 (97%)
Query: 1 MVKVEDDVEGSGINASVGDLRDAAVNPQPALLRATVKEEEGQPXXXXXHVRSQFIGMGFS 60
MVKVEDDVEGSGINASVGDLRDAAVNPQPALLRATVKEEEGQP HVRSQFIGMGFS
Sbjct: 1 MVKVEDDVEGSGINASVGDLRDAAVNPQPALLRATVKEEEGQPSSSSSHVRSQFIGMGFS 60
Query: 61 PMLVDRVLQKHGDRDSDTILEALLSQSALQKSGSESGSLGDLFDSDNEENSSHFAPRKEV 120
PMLVDRVLQKHGDRDSDTILEALLSQSALQKSGSESGSLGDLFDSDNEENSSHFAPRKEV
Sbjct: 61 PMLVDRVLQKHGDRDSDTILEALLSQSALQKSGSESGSLGDLFDSDNEENSSHFAPRKEV 120
Query: 121 IQDIKVEADSSSEKRSYLLSTMNFSQREVDLALNQLGEEASLEQLVDFIVTGQVSGCSGG 180
IQDIKVEADSSSEKRSYLLSTMNFSQREVDLALNQLGEEASLEQLVDFIVTGQVSGCSGG
Sbjct: 121 IQDIKVEADSSSEKRSYLLSTMNFSQREVDLALNQLGEEASLEQLVDFIVTGQVSGCSGG 180
Query: 181 NENGDASNEVKDESLFGVMDKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRI 240
NENGDASNEVKDESLFGVMDKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRI
Sbjct: 181 NENGDASNEVKDESLFGVMDKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRI 240
Query: 241 ASSIEQKEVKVEPDFLDETETSYSAYHPSNSGLRYYDDDHDNIRIKRAKHMFIDDSAGSS 300
ASSIEQKEVKVEPDFLDETETSYSAYHPSNSGLRYYDDDHDNIRIKRAKHMFIDDSAGSS
Sbjct: 241 ASSIEQKEVKVEPDFLDETETSYSAYHPSNSGLRYYDDDHDNIRIKRAKHMFIDDSAGSS 300
Query: 301 SRAGNQPNLDPWLKDHRATTSDGSVKEEFDAMTPGIRRNVRSDVANPPYFLYGNVVEIPK 360
SRAGNQPNLDPWLKDHRATTSDGSVKEEFDAMTPGIRRNVRSDVANPPYFLYGNVVEIPK
Sbjct: 301 SRAGNQPNLDPWLKDHRATTSDGSVKEEFDAMTPGIRRNVRSDVANPPYFLYGNVVEIPK 360
Query: 361 ATWRQLSEFLYNVEPEFVNSQFFSALSRKEGYIHNLPTEGRRNLVPRSPMTIEEAFPFTR 420
ATWRQLSEFLYNVEPEFVNSQFFSALSRKEGYIHNLPTEGRRNLVPRSPMTIEEAFPFTR
Sbjct: 361 ATWRQLSEFLYNVEPEFVNSQFFSALSRKEGYIHNLPTEGRRNLVPRSPMTIEEAFPFTR 420
Query: 421 QCWPSWDTRKQLNSVATEVAGIEQLCERLGKMVRDSGGYLSQEKKTHIMHQCKLANLIWV 480
QCWPSWDTRKQLNSVATEVAGIEQLCERLGKMVRDSGGYLSQEKKTHIMHQCKLANLIWV
Sbjct: 421 QCWPSWDTRKQLNSVATEVAGIEQLCERLGKMVRDSGGYLSQEKKTHIMHQCKLANLIWV 480
Query: 481 GPDRLSPLDPQQVERILGYPRKHTNLFGLNPQDRIEAMRYSFQTDTLGYLLSVLKDLYPD 540
GPDRLSPLDPQQVERILGYPRKHTNLFGLNPQDRIEAMRYSFQTDTLGYLLSVLKDLYPD
Sbjct: 481 GPDRLSPLDPQQVERILGYPRKHTNLFGLNPQDRIEAMRYSFQTDTLGYLLSVLKDLYPD 540
Query: 541 GLRVLSIYSGIGGAAIALHRLGIPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLRQINTI 600
GLRVLSIYSGIGGAAIALHRLGIPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLRQINTI
Sbjct: 541 GLRVLSIYSGIGGAAIALHRLGIPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLRQINTI 600
Query: 601 WKLKINVLEDLVKEXXXXXXXXXXXXSSCKGGTTVNSSMGMDSNQFFEYVRVVQRVKHIM 660
WKLKINVLEDLVKE SSCKGGTTVNSSMGMDSNQFFEYVRVVQRVKHIM
Sbjct: 601 WKLKINVLEDLVKEFGGFDIIIGGNFSSCKGGTTVNSSMGMDSNQFFEYVRVVQRVKHIM 660
Query: 661 GRLQNRG 667
GRLQNRG
Sbjct: 661 GRLQNRG 667
>Os03g0110800 Similar to DNA methyltransferase
Length = 597
Score = 285 bits (728), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 170/488 (34%), Positives = 258/488 (52%), Gaps = 56/488 (11%)
Query: 192 DESLFGVM----DKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRIASSIEQK 247
DE F M +K L+ MGF E+E ID+ +A V L D+I+A +
Sbjct: 144 DEDFFQEMSEKDEKMKSLVNMGFPEDEAKMAIDRC-LDAPVAVLVDSIYASQ-------- 194
Query: 248 EVKVEPDFLDETETSYSAYHPSNSGLRYYDDDHDNIRIKRAKHMFIDDSAGSSSRAGNQP 307
E YSA L Y+D + R K F+D S R G+ P
Sbjct: 195 ----------EAGNGYSA------NLSDYEDTEFSSFGGRKKTRFVDGSK-KRKRYGSGP 237
Query: 308 NLDPWLKDHRATTSDGSVKEEFDAMTP------------GIRRNVRSDVANPPYFLYGNV 355
+ + DGS +E P + RN+ PP+F Y NV
Sbjct: 238 SGN-------QVPFDGSHEEPMPLPNPMVGFSLPNERLRSVHRNLPDQALGPPFFYYENV 290
Query: 356 VEIPKATWRQLSEFLYNVEPEFVNSQFFSALSRKEGYIHNLPTEGRRNLVPRSPMTIEEA 415
PK W +S FLY+++PEFV+S++F A +RK GYIHNLP E R ++P P TI EA
Sbjct: 291 ALAPKGVWTTISRFLYDIQPEFVDSKYFCAAARKRGYIHNLPIENRSPVLPMPPKTISEA 350
Query: 416 FPFTRQCWPSWDTRKQLNSVATEVAGIEQLCERLGKMVRDSGGYLSQEKKTHIMHQCKLA 475
FP T++ WPSWD R+Q N + T +A +L ER+ + + + + +++ +C+
Sbjct: 351 FPNTKRWWPSWDPRRQFNCLQTCMASA-KLTERIRCALGRFSDVPTPQVQKYVLDECRKW 409
Query: 476 NLIWVGPDRLSPLDPQQVERILGYPRKHTNLFGLNPQDRIEAMRYSFQTDTLGYLLSVLK 535
NL+WVG ++++PL+P ++E +LGYPR HT G++ +R A+ SFQ DT+ Y LSVL+
Sbjct: 410 NLVWVGKNKVAPLEPDEMEFLLGYPRNHTR--GVSRTERYRALGNSFQVDTVAYHLSVLR 467
Query: 536 DLYPDGLRVLSIYSGIGGAAIALHRLGIPLQCVVSVDQSDTNRKILRRWWSNTEQKGQLR 595
DL+P+G+ VLS++SGIGGA +ALHRLGI ++ V+SV++S+ NR IL+ WW T Q G L
Sbjct: 468 DLFPNGMNVLSLFSGIGGAEVALHRLGIHMKTVISVEKSEVNRTILKSWWDQT-QTGTLI 526
Query: 596 QINTIWKLKINVLEDLVKEXXXXXXXXXXXXSSCKGGTTVNSSMGMD---SNQFFEYVRV 652
+I + L +E ++ + G+ + G++ S F++Y+R+
Sbjct: 527 EIADVRHLTTERIETFIRRFGGFDLVIGGSPCNNLAGSNRHHRDGLEGEHSALFYDYIRI 586
Query: 653 VQRVKHIM 660
++ VK M
Sbjct: 587 LEHVKATM 594
>Os12g0108900 UBA-like domain containing protein
Length = 437
Score = 177 bits (448), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/308 (33%), Positives = 158/308 (51%), Gaps = 26/308 (8%)
Query: 200 DKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRIASSIEQKEVKVEPDFLDET 259
+K L+ MGF E+E I + G +A+V L ++I+A A ++ + D
Sbjct: 126 EKIKSLVSMGFPEDEAMRAITRCGLDASVDLLVESIYAPASAGNVYFTNLS------DYE 179
Query: 260 ETSYSAYHPSNSGLRYYDDDHDNIRIKRAKHMFIDDSAGSSSRAGNQPNLDPWLKDHRAT 319
+T +S++ G R D + KR ++ R+ Q N P+ H
Sbjct: 180 DTEFSSF-----GGRKKTKLIDGTKKKRERY-----------RSRPQWNQVPFDGSHEEP 223
Query: 320 TSDGSVKEEFDAMTPGIR---RNVRSDVANPPYFLYGNVVEIPKATWRQLSEFLYNVEPE 376
+ F G+R RN+ PP+F Y NV PK W +S FLY++ PE
Sbjct: 224 MPLPNPMVGFSLPNDGLRSVHRNLPDHALGPPFFYYENVALAPKGVWTTISRFLYDIYPE 283
Query: 377 FVNSQFFSALSRKEGYIHNLPTEGRRNLVPRSPMTIEEAFPFTRQCWPSWDTRKQLNSVA 436
FV+S++F A +RK GYIHNLP E R ++P P TI EAFP T+ WPSWD R+Q N +
Sbjct: 284 FVDSKYFCAAARKRGYIHNLPIENRSPVLPIPPKTISEAFPSTKMWWPSWDPRRQFNCLQ 343
Query: 437 TEVAGIEQLCERLGKMVRDSGGYLSQEKKTHIMHQCKLANLIWVGPDRLSPLDPQQVERI 496
T VA + ER+ + G L + ++ +C+ NL+WVG ++++ L+P ++E +
Sbjct: 344 TYVASAKH-TERIRCALGRFGDALPPAVQKSVLEECRKWNLVWVGKNKVATLEPDEMEFL 402
Query: 497 LGYPRKHT 504
LGYPR HT
Sbjct: 403 LGYPRNHT 410
>Os11g0109200 C-5 cytosine-specific DNA methylase family protein
Length = 473
Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 4/159 (2%)
Query: 508 GLNPQDRIEAMRYSFQTDTLGYLLSVLKDLYPDGLRVLSIYSGIGGAAIALHRLGIPLQC 567
G++ R A+ SFQ DT+ Y LSVL+D++P+G+ VLS++SGIGGA +ALHRLGI ++
Sbjct: 274 GVSRTARYRALGNSFQVDTVAYHLSVLRDIFPNGMNVLSLFSGIGGAEVALHRLGICMKT 333
Query: 568 VVSVDQSDTNRKILRRWWSNTEQKGQLRQINTIWKLKINVLEDLVKEXXXXXXXXXXXXS 627
VV V+ S+ N +LR WW T Q G L +I + L +E ++
Sbjct: 334 VVLVEISEVNMTLLRSWWDQT-QTGTLIEIADVQNLTAERIELFIRRFGGFDLVIGGSPC 392
Query: 628 SCKGGTTVNSSMGMD---SNQFFEYVRVVQRVKHIMGRL 663
+ G+ G++ S F+ Y R++ VK IM +
Sbjct: 393 NNLAGSNRYHRDGLEGKHSALFYHYYRILDSVKTIMASI 431
Score = 80.1 bits (196), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 73/282 (25%), Positives = 117/282 (41%), Gaps = 33/282 (11%)
Query: 125 KVEADSSSEKRSYLLSTMNFSQREVDLALNQLGEEASLEQLVDFIVTGQVSGCSGGNENG 184
K + S +Y L M FS+ V A+ ++G+ S EQ+++ ++T Q G G
Sbjct: 16 KANGSAPSALVAYFLG-MGFSREMVFRAIKEIGDTDS-EQILELLLTYQAIGSD--PSVG 71
Query: 185 DASNEVKDESLFGVMDKTLHLLQMGFTEEEVSSVIDKAGPEATVLELADTIFARRIASSI 244
++S+ D + D+ + +D D F + ++
Sbjct: 72 NSSHSACDPQILEEEDEEED------VNWDEDDTVDNFDRATYSDGSGDEDFLQEMSEKD 125
Query: 245 EQKEVKVEPDFLDETETSYSAYHPSNSGLRYYDDDHDNIRIKRAKHMFIDDSAGSSSRAG 304
E+ + V F ++ +T +S++ R K ID S R
Sbjct: 126 EKIKSLVSMGFPEDEDTEFSSFG------------------GRKKTKLIDGSKKKRERYR 167
Query: 305 NQP--NLDPWLKDHRATTSDGSVKEEFDAMTPGIR---RNVRSDVANPPYFLYGNVVEIP 359
++P N P+ H + F G+R RN+ PP+F Y NV P
Sbjct: 168 SRPQWNQVPFDGSHEEPMPLPNSMVGFSLPNDGLRSVHRNLPDQALGPPFFYYENVALAP 227
Query: 360 KATWRQLSEFLYNVEPEFVNSQFFSALSRKEGYIHNLPTEGR 401
K W +S FLY++ PEFV S++F A +RK GYIHNLP + R
Sbjct: 228 KGVWTTISRFLYDIYPEFVYSKYFCAAARKRGYIHNLPIKNR 269
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.133 0.383
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 22,119,530
Number of extensions: 919598
Number of successful extensions: 2316
Number of sequences better than 1.0e-10: 4
Number of HSP's gapped: 2307
Number of HSP's successfully gapped: 5
Length of query: 667
Length of database: 17,035,801
Length adjustment: 107
Effective length of query: 560
Effective length of database: 11,448,903
Effective search space: 6411385680
Effective search space used: 6411385680
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 159 (65.9 bits)