BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0129900 Os05g0129900|AK060436
(397 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0129900 Tetratricopeptide-like helical domain containi... 822 0.0
Os02g0754500 Amidase family protein 86 5e-17
Os03g0707900 Similar to Toc64 84 2e-16
Os05g0204900 Similar to Type 5 protein serine/threonine pho... 79 8e-15
Os02g0491400 Similar to Peptidylprolyl isomerase 68 1e-11
>Os05g0129900 Tetratricopeptide-like helical domain containing protein
Length = 397
Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 397/397 (100%), Positives = 397/397 (100%)
Query: 1 MEARARTYGSSGASPGNLGDRYDNYANYSSYLNDEPMPDAASEKEQGNEYFKQKKFAQAI 60
MEARARTYGSSGASPGNLGDRYDNYANYSSYLNDEPMPDAASEKEQGNEYFKQKKFAQAI
Sbjct: 1 MEARARTYGSSGASPGNLGDRYDNYANYSSYLNDEPMPDAASEKEQGNEYFKQKKFAQAI 60
Query: 61 ECYSRSIGLSPSAVAFANRAMAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRITARKEL 120
ECYSRSIGLSPSAVAFANRAMAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRITARKEL
Sbjct: 61 ECYSRSIGLSPSAVAFANRAMAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRITARKEL 120
Query: 121 GKLKEAMDDAEFAVSIDPNNPELRKQYSEIKELHMKEVANRSKPTKHTVFKFDKSGDKKD 180
GKLKEAMDDAEFAVSIDPNNPELRKQYSEIKELHMKEVANRSKPTKHTVFKFDKSGDKKD
Sbjct: 121 GKLKEAMDDAEFAVSIDPNNPELRKQYSEIKELHMKEVANRSKPTKHTVFKFDKSGDKKD 180
Query: 181 TSHAPSSSQKDSFMEVDPPSRVAVEIREKADGTSKGGSGVIFKDSTVQPSRDAKQKPGPE 240
TSHAPSSSQKDSFMEVDPPSRVAVEIREKADGTSKGGSGVIFKDSTVQPSRDAKQKPGPE
Sbjct: 181 TSHAPSSSQKDSFMEVDPPSRVAVEIREKADGTSKGGSGVIFKDSTVQPSRDAKQKPGPE 240
Query: 241 ASIQDLASRAASRYMASTVKSVKTPKTAYDFEVSWRALSNDTAKQTQLLKSIPPSSLPEI 300
ASIQDLASRAASRYMASTVKSVKTPKTAYDFEVSWRALSNDTAKQTQLLKSIPPSSLPEI
Sbjct: 241 ASIQDLASRAASRYMASTVKSVKTPKTAYDFEVSWRALSNDTAKQTQLLKSIPPSSLPEI 300
Query: 301 FKNALSAAFLIDIVKCTTSIFREDTMLAVSILENLAKVPRFDLIIMCLSSMHKSELRKVW 360
FKNALSAAFLIDIVKCTTSIFREDTMLAVSILENLAKVPRFDLIIMCLSSMHKSELRKVW
Sbjct: 301 FKNALSAAFLIDIVKCTTSIFREDTMLAVSILENLAKVPRFDLIIMCLSSMHKSELRKVW 360
Query: 361 DQIFLAETASADQVEALRQLRAKYIQEGLQDNMFTSN 397
DQIFLAETASADQVEALRQLRAKYIQEGLQDNMFTSN
Sbjct: 361 DQIFLAETASADQVEALRQLRAKYIQEGLQDNMFTSN 397
>Os02g0754500 Amidase family protein
Length = 613
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 44/98 (44%), Positives = 69/98 (70%), Gaps = 1/98 (1%)
Query: 44 KEQGNEYFKQKKFAQAIECYSRSIGLSPS-AVAFANRAMAYLKLRRFEEAENDCTEALNL 102
KE+GN FK +K+++A+E YS +I L+ + A ++NRA AYL+L R+++AE DC +AL L
Sbjct: 501 KEKGNSAFKGRKWSKAVEFYSDAIKLNGTNATYYSNRAAAYLELGRYKQAEADCEQALLL 560
Query: 103 DDRYVKAYSRRITARKELGKLKEAMDDAEFAVSIDPNN 140
D + VKAY RR AR+ + +EA+ D A++++P N
Sbjct: 561 DKKNVKAYLRRGIAREAVLNHQEALQDIRHALALEPQN 598
>Os03g0707900 Similar to Toc64
Length = 586
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 70/108 (64%), Gaps = 1/108 (0%)
Query: 47 GNEYFKQKKFAQAIECYSRSIGLS-PSAVAFANRAMAYLKLRRFEEAENDCTEALNLDDR 105
GN FK+K++ +AI Y+ +I L+ A ++NRA A+L+L + +AE DCT A+++D +
Sbjct: 477 GNIAFKEKQWQKAINFYTEAIKLNNKVATYYSNRAAAFLELASYRQAEADCTSAIDIDPK 536
Query: 106 YVKAYSRRITARKELGKLKEAMDDAEFAVSIDPNNPELRKQYSEIKEL 153
VKAY RR TAR+ LG KEA+DD A+ ++P N + +K+L
Sbjct: 537 IVKAYLRRGTAREMLGYYKEAVDDFSHALVLEPMNKTAGVAINRLKKL 584
>Os05g0204900 Similar to Type 5 protein serine/threonine phosphatase 62 kDa
isoform
Length = 483
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 67/110 (60%), Gaps = 1/110 (0%)
Query: 44 KEQGNEYFKQKKFAQAIECYSRSIGLSPS-AVAFANRAMAYLKLRRFEEAENDCTEALNL 102
K + N+ FK KF+ AIE YS++I L+ S AV +ANRA A+ KL + A D ++A+ +
Sbjct: 16 KLKANDAFKANKFSLAIELYSQAIELNSSNAVYWANRAFAHTKLEEYGSAVQDASKAIEI 75
Query: 103 DDRYVKAYSRRITARKELGKLKEAMDDAEFAVSIDPNNPELRKQYSEIKE 152
D RY K Y RR A +GK KEA+ D + I PN+P+ ++ E ++
Sbjct: 76 DARYSKGYYRRGAAYLAMGKFKEALKDFQQVKRISPNDPDATRKLKECEK 125
>Os02g0491400 Similar to Peptidylprolyl isomerase
Length = 682
Score = 67.8 bits (164), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 85/176 (48%), Gaps = 19/176 (10%)
Query: 33 NDEPMPDAASEKEQGNEYFKQKKFAQAIECYSRSIGLSPSAVAFA--------------- 77
N E + AA +K++GN +FK +K+A+A + Y +++ +F+
Sbjct: 449 NTEKIEAAAKKKDEGNAWFKMEKYARASKRYGKALNFIQYDSSFSEEEKQLSKPLKVSCK 508
Query: 78 -NRAMAYLKLRRFEEAENDCTEALNLDDRYVKAYSRRITARKELGKLKEAMDDAEFAVSI 136
N A LKL+ ++EA+ CTE L LD VKA+ RR A L A D + A+ I
Sbjct: 509 LNNAACKLKLKDYKEAKELCTEVLELDSMNVKAFYRRAQAHMYLVDFDLAELDIKKALEI 568
Query: 137 DPNNPELRKQYSEIKELHMKEVANRSKPTKHTVFKFDKSGDKK---DTSHAPSSSQ 189
DP+N +++ Y +KE ++ +K + + K K D + T+ APS
Sbjct: 569 DPDNRDVKMGYRRLKEKVKEQKRKETKLYGNMISKLSKLEDSETEGGTTQAPSKKH 624
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.313 0.127 0.350
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 12,900,877
Number of extensions: 512443
Number of successful extensions: 1501
Number of sequences better than 1.0e-10: 13
Number of HSP's gapped: 1512
Number of HSP's successfully gapped: 13
Length of query: 397
Length of database: 17,035,801
Length adjustment: 103
Effective length of query: 294
Effective length of database: 11,657,759
Effective search space: 3427381146
Effective search space used: 3427381146
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 157 (65.1 bits)