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Os05g0129900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Tetratricopeptide-like helical domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 10.1 (0.013) R2 : 0.471
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.617 (0.031) R2dC : 0.461 R2C : 0.457
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : -0.0842 (0.0273) R2dN8 : 0.0142 R2N8 : 0.0102
σ : 0.245
deviance : 27.37
__
_____
C
peak time of C : 11.1
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = < th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
20.78 0.214 10.1 -0.295 0.27 -0.338 0.0682 -0.27 -0.118 9.97 8.42 7 -- --
20.95 0.213 10.1 -0.27 0.281 -0.326 0.333 -- -0.124 10.1 8.402 6 -- --
20.79 0.212 10.1 -0.291 0.272 -0.339 -- -0.312 -0.118 9.92 8.48 5 -- --
21.33 0.215 10.1 -0.274 0.255 -0.351 -- -- -0.111 9.89 8.61 4 -- --
22.67 0.222 10.1 -0.217 -- -0.475 -- -0.176 -0.11 -- 8.75 3 -- --
24.51 0.232 10.1 -0.31 0.615 -- 0.364 -- -0.118 11.1 -- -- -- --
25.08 0.235 10.1 -0.295 0.614 -- -- -- -0.117 11.1 -- -- -- --
22.96 0.223 10.1 -0.259 -- -0.498 -- -- -0.106 -- 8.65 3 -- --
23.12 0.224 10.1 -- 0.234 -0.382 -- -- -0.0833 9.69 8.88 2 -- --
48.58 0.326 10.1 -0.309 -- -- -- -- -0.122 -- -- -- -- --
27.37 0.245 10.1 -- 0.617 -- -- -- -0.0842 11.1 -- -- -- --
24.61 0.231 10.1 -- -- -0.501 -- -- -0.0878 -- 8.62 2 -- --
51.1 0.334 10.1 -- -- -- -- -- -0.0878 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 17.50 radiation 10.0 90 < th dose dependent sin 4 NA
2 17.56 radiation 20.0 90 < th dose dependent sin 6 NA
6 17.79 wind 9.0 270 < th dose dependent rect. 5 6
11 17.99 radiation 20.0 90 < th dose dependent rect. 1 14
12 18.00 radiation 20.0 90 < th dose dependent rect. 1 16
14 18.03 temperature 10.0 10 > th dose dependent rect. 7 5
16 18.05 radiation 1.0 270 > th dose independent sin 7 NA
18 18.06 radiation 10.0 270 < th dose dependent sin 9 NA
20 18.07 radiation 1.0 270 < th dose independent sin 7 NA
21 18.07 temperature 10.0 270 > th dose dependent rect. 5 6
24 18.12 wind 7.0 270 < th dose independent rect. 5 6
25 18.13 radiation 10.0 270 < th dose dependent rect. 23 15
34 18.18 precipitation 0.1 270 < th dose independent rect. 5 6
36 18.18 precipitation 0.1 270 < th dose dependent rect. 5 6
38 18.19 wind 5.0 90 < th dose independent rect. 7 18
39 18.20 temperature 10.0 270 > th dose dependent rect. 6 4
41 18.21 temperature 10.0 270 > th dose independent rect. 5 6
42 18.21 atmosphere 995.0 270 > th dose independent rect. 5 6
43 18.21 atmosphere 1015.0 270 < th dose independent rect. 5 6
44 18.21 temperature 10.0 270 > th dose independent rect. 11 18
45 18.23 humidity 50.0 270 > th dose independent rect. 5 6
48 18.24 radiation 1.0 270 > th dose independent rect. 5 6
59 18.24 wind 9.0 270 < th dose independent rect. 11 18
65 18.28 radiation 10.0 90 < th dose independent rect. 1 14
66 18.28 temperature 20.0 90 > th dose dependent rect. 6 5
78 18.37 precipitation 0.1 270 < th dose independent rect. 11 18
84 18.37 precipitation 0.1 270 < th dose dependent rect. 11 18
85 18.38 wind 5.0 270 < th dose independent rect. 6 4
89 18.40 radiation 20.0 10 < th dose dependent sin 4 NA
100 18.44 radiation 10.0 90 < th dose independent rect. 1 16
101 18.44 radiation 1.0 270 < th dose independent rect. 23 16
111 18.47 radiation 10.0 90 < th dose dependent rect. 3 12
119 18.51 wind 9.0 90 < th dose dependent rect. 7 18
122 18.52 radiation 10.0 270 < th dose dependent rect. 23 7
131 18.55 temperature 10.0 270 > th dose dependent rect. 23 7
133 18.56 radiation 1.0 270 < th dose independent rect. 23 8
143 18.57 wind 9.0 10 < th dose dependent rect. 7 5
147 18.58 radiation 1.0 270 > th dose independent rect. 6 4
163 18.61 temperature 10.0 270 > th dose independent rect. 23 7
165 18.61 temperature 30.0 270 < th dose independent rect. 23 7
166 18.61 humidity 50.0 270 > th dose independent rect. 23 7
169 18.61 atmosphere 995.0 270 > th dose independent rect. 23 7
170 18.61 radiation 20.0 270 < th dose independent rect. 23 7
175 18.61 temperature 10.0 270 > th dose independent rect. 6 17
179 18.62 wind 9.0 270 < th dose independent rect. 23 7
180 18.62 atmosphere 1010.0 270 < th dose independent rect. 23 7
181 18.62 precipitation 0.1 270 < th dose independent rect. 23 7
183 18.62 precipitation 0.1 270 < th dose dependent rect. 23 7
184 18.62 radiation 10.0 270 < th dose dependent rect. 23 10
194 18.64 precipitation 0.1 270 < th dose independent rect. 6 4
197 18.64 precipitation 0.1 270 < th dose dependent rect. 6 4
205 18.65 wind 9.0 270 < th dose independent rect. 6 17
209 18.66 temperature 10.0 270 > th dose independent rect. 6 4
210 18.66 humidity 50.0 270 > th dose independent rect. 6 4
211 18.66 atmosphere 995.0 270 > th dose independent rect. 6 4
212 18.66 atmosphere 1015.0 270 < th dose independent rect. 6 4
226 18.66 temperature 10.0 270 > th dose independent rect. 10 20
271 18.73 wind 9.0 270 < th dose independent rect. 10 20
272 18.73 radiation 1.0 90 > th dose dependent sin 8 NA
279 18.74 temperature 10.0 270 > th dose dependent rect. 1 4
289 18.76 wind 9.0 270 < th dose independent rect. 1 4
290 18.76 temperature 10.0 270 > th dose independent rect. 1 4
292 18.76 temperature 30.0 270 < th dose independent rect. 1 4
293 18.76 humidity 50.0 270 > th dose independent rect. 1 4
296 18.76 atmosphere 995.0 270 > th dose independent rect. 1 4
297 18.76 atmosphere 1010.0 270 < th dose independent rect. 1 4
299 18.76 radiation 1.0 270 < th dose independent rect. 1 4
305 18.76 temperature 10.0 270 > th dose independent rect. 5 20
307 18.76 radiation 10.0 270 < th dose dependent rect. 1 4
321 18.77 precipitation 0.1 270 < th dose independent rect. 6 17
322 18.77 wind 1.0 270 > th dose independent rect. 11 18
329 18.77 precipitation 0.1 270 < th dose dependent rect. 6 17
334 18.79 precipitation 0.1 270 < th dose independent rect. 1 4
335 18.79 temperature 10.0 270 > th dose independent rect. 15 10
336 18.79 temperature 10.0 270 > th dose independent rect. 1 14
337 18.79 atmosphere 1015.0 270 < th dose independent rect. 1 14
339 18.79 wind 9.0 270 < th dose independent rect. 5 20
340 18.79 precipitation 0.1 270 < th dose dependent rect. 1 4
354 18.81 temperature 10.0 270 > th dose dependent rect. 7 1
359 18.82 radiation 40.0 270 < th dose independent rect. 15 10
361 18.82 atmosphere 1015.0 270 < th dose independent rect. 11 18
389 18.83 humidity 50.0 90 > th dose dependent rect. 1 6
392 18.84 wind 1.0 270 > th dose independent rect. 10 8
414 18.87 wind 9.0 270 < th dose independent rect. 15 10
416 18.87 humidity 50.0 10 > th dose independent rect. 12 19
441 18.89 humidity 50.0 270 > th dose dependent rect. 1 4
449 18.90 atmosphere 995.0 270 > th dose independent rect. 1 14
454 18.90 humidity 50.0 270 > th dose dependent rect. 23 7
456 18.90 radiation 20.0 90 < th dose dependent rect. 1 8
469 18.92 wind 9.0 270 < th dose independent rect. 1 14
470 18.92 humidity 50.0 270 > th dose independent rect. 1 14
500 18.94 humidity 70.0 30 > th dose dependent sin 5 NA
519 18.96 atmosphere 995.0 270 > th dose independent rect. 6 17
538 18.97 precipitation 0.1 270 < th dose independent rect. 5 20
546 18.97 precipitation 0.1 270 < th dose dependent rect. 5 20
563 18.98 precipitation 0.1 270 < th dose independent rect. 1 14
576 18.98 precipitation 0.1 270 < th dose dependent rect. 1 14
577 18.98 radiation 20.0 10 < th dose dependent rect. 2 15
603 19.00 humidity 60.0 10 > th dose dependent rect. 2 15
612 19.02 atmosphere 995.0 270 > th dose independent rect. 11 18
613 19.02 radiation 1.0 90 > th dose dependent rect. 6 5
625 19.03 humidity 50.0 90 > th dose dependent rect. 1 16
628 19.04 radiation 1.0 10 > th dose independent rect. 7 5
655 19.06 radiation 10.0 10 < th dose independent rect. 2 15
656 19.06 atmosphere 995.0 270 > th dose independent rect. 5 19
711 19.08 wind 9.0 90 < th dose dependent rect. 1 6
713 19.08 wind 9.0 270 < th dose dependent rect. 23 7
729 19.09 temperature 30.0 270 < th dose independent rect. 6 3
730 19.09 wind 9.0 10 < th dose independent rect. 7 5
754 19.10 precipitation 0.1 10 < th dose independent rect. 12 19
759 19.10 radiation 40.0 270 < th dose dependent rect. 15 10
762 19.10 precipitation 0.1 10 < th dose dependent rect. 12 19
780 19.11 wind 9.0 270 < th dose dependent rect. 1 4
790 19.12 precipitation 0.1 270 < th dose independent rect. 15 10
797 19.12 precipitation 0.1 270 < th dose dependent rect. 15 10
805 19.13 precipitation 0.1 10 < th dose independent rect. 7 5
809 19.13 precipitation 0.1 10 < th dose dependent rect. 7 5
832 19.15 temperature 10.0 10 > th dose independent rect. 7 5
834 19.15 atmosphere 995.0 10 > th dose independent rect. 7 5
835 19.15 atmosphere 1015.0 10 < th dose independent rect. 7 5
836 19.15 atmosphere 995.0 270 > th dose independent rect. 16 9
837 19.15 wind 9.0 10 < th dose independent rect. 12 19
838 19.15 temperature 10.0 10 > th dose independent rect. 12 19
868 19.19 temperature 30.0 270 < th dose independent rect. 5 6
923 19.23 radiation 20.0 10 < th dose dependent rect. 2 13
943 19.25 wind 1.0 270 > th dose independent rect. 1 4
957 19.26 temperature 25.0 10 > th dose independent rect. 7 5
959 19.26 atmosphere 995.0 270 > th dose independent rect. 18 16
988 19.28 temperature 30.0 270 < th dose independent rect. 7 1