Os02g0754500
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Amidase family protein.
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Os02g0754500 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Amidase family protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose independent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 80.38 | 0.421 | 7.09 | 0.0733 | 1.67 | -4.48 | 5.1 | -5.83 | 0.245 | 5.79 | 0.82 | 745 | -- | -- |
| 86.49 | 0.433 | 7.13 | 0.0302 | 1.13 | -3.75 | 0.616 | -- | 0.173 | 5.12 | 0.83 | 727 | -- | -- |
| 85.65 | 0.431 | 7.13 | -0.071 | 0.779 | -3.43 | -- | 0.0872 | 0.269 | 7.9 | 0.9998 | 824 | -- | -- |
| 84.58 | 0.428 | 7.13 | 0.0406 | 0.9 | -3.71 | -- | -- | 0.206 | 7.3 | 1.56 | 811 | -- | -- |
| 87.43 | 0.435 | 7.15 | 0.0789 | -- | -2.61 | -- | 0.0419 | 0.247 | -- | 1.67 | 783 | -- | -- |
| 111.39 | 0.495 | 7.17 | 0.232 | 1.8 | -- | -0.358 | -- | 0.344 | 18 | -- | -- | -- | -- |
| 111.7 | 0.495 | 7.17 | 0.235 | 1.79 | -- | -- | -- | 0.342 | 18 | -- | -- | -- | -- |
| 87.4 | 0.435 | 7.15 | 0.0936 | -- | -2.55 | -- | -- | 0.242 | -- | 1.66 | 780 | -- | -- |
| 84.24 | 0.427 | 7.14 | -- | 0.894 | -3.69 | -- | -- | 0.198 | 7.08 | 1.499 | 803 | -- | -- |
| 278.37 | 0.78 | 7.14 | 0.183 | -- | -- | -- | -- | 0.302 | -- | -- | -- | -- | -- |
| 113.16 | 0.498 | 7.17 | -- | 1.79 | -- | -- | -- | 0.316 | 18 | -- | -- | -- | -- |
| 87.61 | 0.436 | 7.15 | -- | -- | -2.56 | -- | -- | 0.234 | -- | 1.662 | 782 | -- | -- |
| 279.25 | 0.78 | 7.14 | -- | -- | -- | -- | -- | 0.281 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 78.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 19 | 23 |
| 2 | 80.11 | wind | 5 | 14400 | > th | dose independent | rect. | 4 | 10 |
| 4 | 80.35 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 23 |
| 6 | 80.45 | wind | 5 | 14400 | < th | dose independent | rect. | 4 | 10 |
| 8 | 80.59 | wind | 3 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 11 | 80.73 | radiation | 1 | 720 | < th | dose independent | rect. | 19 | 23 |
| 13 | 80.80 | wind | 5 | 14400 | > th | dose dependent | rect. | 4 | 10 |
| 19 | 80.99 | wind | 3 | 43200 | < th | dose independent | rect. | 9 | 1 |
| 22 | 81.11 | wind | 7 | 43200 | > th | dose independent | rect. | 12 | 4 |
| 27 | 81.18 | wind | 5 | 14400 | > th | dose dependent | rect. | 24 | 15 |
| 32 | 81.31 | wind | 1 | 43200 | < th | dose dependent | rect. | 24 | 4 |
| 34 | 81.36 | wind | 5 | 14400 | < th | dose independent | rect. | 24 | 14 |
| 38 | 81.41 | wind | 5 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 45 | 81.50 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 47 | 81.52 | wind | 7 | 43200 | < th | dose independent | rect. | 11 | 5 |
| 53 | 81.60 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 9 |
| 54 | 81.61 | wind | 7 | 43200 | > th | dose dependent | rect. | 12 | 4 |
| 57 | 81.64 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 8 |
| 60 | 81.69 | wind | 7 | 43200 | > th | dose dependent | rect. | 15 | 1 |
| 67 | 81.79 | radiation | 1 | 720 | > th | dose independent | rect. | 17 | 18 |
| 75 | 81.92 | wind | 7 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 88 | 82.01 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 104 | 82.14 | wind | 5 | 14400 | > th | dose dependent | sin | 5 | NA |
| 106 | 82.15 | wind | 3 | 43200 | > th | dose independent | rect. | 21 | 1 |
| 139 | 82.43 | wind | 5 | 43200 | < th | dose dependent | rect. | 9 | 1 |
| 159 | 82.56 | radiation | 1 | 720 | < th | dose independent | rect. | 5 | 18 |
| 160 | 82.57 | wind | 5 | 14400 | > th | dose independent | sin | 5 | NA |
| 183 | 82.68 | wind | 7 | 43200 | > th | dose independent | sin | 22 | NA |
| 195 | 82.71 | wind | 7 | 43200 | < th | dose independent | sin | 22 | NA |
| 227 | 82.82 | wind | 1 | 43200 | < th | dose dependent | rect. | 1 | 2 |
| 236 | 82.85 | wind | 3 | 43200 | < th | dose independent | rect. | 21 | 1 |
| 239 | 82.86 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 13 |
| 241 | 82.88 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 13 |
| 244 | 82.90 | wind | 5 | 14400 | < th | dose independent | sin | 5 | NA |
| 279 | 83.04 | radiation | 1 | 720 | < th | dose independent | rect. | 15 | 17 |
| 318 | 83.17 | wind | 7 | 43200 | > th | dose dependent | rect. | 11 | 19 |
| 319 | 83.18 | radiation | 1 | 720 | < th | dose independent | sin | 13 | NA |
| 325 | 83.20 | wind | 7 | 43200 | > th | dose independent | rect. | 5 | 16 |
| 326 | 83.20 | wind | 7 | 43200 | < th | dose independent | rect. | 5 | 16 |
| 493 | 83.65 | radiation | 1 | 720 | > th | dose independent | rect. | 7 | 12 |
| 511 | 83.67 | wind | 1 | 43200 | > th | dose dependent | rect. | 20 | 2 |
| 523 | 83.70 | wind | 7 | 43200 | < th | dose independent | rect. | 10 | 20 |
| 524 | 83.70 | radiation | 1 | 720 | < th | dose independent | rect. | 11 | 22 |
| 548 | 83.76 | wind | 5 | 43200 | > th | dose dependent | sin | 23 | NA |
| 551 | 83.77 | radiation | 1 | 720 | < th | dose independent | no | NA | NA |
| 608 | 83.89 | radiation | 1 | 14400 | < th | dose dependent | rect. | 4 | 1 |
| 682 | 84.04 | wind | 7 | 43200 | > th | dose dependent | sin | 18 | NA |
| 699 | 84.07 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 22 |
| 703 | 84.08 | radiation | 1 | 720 | < th | dose dependent | rect. | 14 | 19 |
| 723 | 84.11 | radiation | 1 | 720 | > th | dose independent | rect. | 16 | 23 |
| 758 | 84.17 | radiation | 1 | 720 | < th | dose dependent | rect. | 16 | 23 |
| 764 | 84.18 | radiation | 1 | 720 | < th | dose dependent | no | NA | NA |
| 767 | 84.18 | radiation | 1 | 720 | < th | dose dependent | rect. | 11 | 23 |
| 807 | 84.25 | wind | 5 | 43200 | > th | dose dependent | rect. | 5 | 16 |
| 840 | 84.29 | radiation | 1 | 720 | < th | dose dependent | sin | 13 | NA |
| 855 | 84.31 | wind | 1 | 43200 | > th | dose dependent | rect. | 9 | 1 |
| 856 | 84.31 | wind | 5 | 43200 | < th | dose dependent | rect. | 8 | 4 |
| 952 | 84.47 | radiation | 1 | 720 | > th | dose independent | rect. | 5 | 14 |
| 971 | 84.48 | radiation | 1 | 720 | < th | dose dependent | rect. | 3 | 23 |
| 988 | 84.50 | temperature | 30 | 270 | < th | dose independent | rect. | 11 | 20 |