BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0114700 Os05g0114700|AK111634
(93 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0114700 Myb, DNA-binding domain containing protein 94 3e-20
Os01g0975300 Similar to Typical P-type R2R3 Myb protein (Fr... 75 7e-15
Os11g0700500 Similar to Snapdragon myb protein 305 homolog 67 3e-12
Os12g0567300 Myb, DNA-binding domain containing protein 66 5e-12
AK107214 66 5e-12
>Os05g0114700 Myb, DNA-binding domain containing protein
Length = 93
Score = 93.6 bits (231), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/93 (58%), Positives = 54/93 (58%)
Query: 1 MVVKKXXXXXXXXXXXXXXXXXXCGSGGNEXXXXXXXXXNRXXXXXXXXXXXXRMRKGPW 60
MVVKK CGSGGNE NR RMRKGPW
Sbjct: 1 MVVKKAATMAEAEAEEEMMMRMMCGSGGNEMMKTKMKKKNREGEEEEEVSGGGRMRKGPW 60
Query: 61 TEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
TEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG
Sbjct: 61 TEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
>Os01g0975300 Similar to Typical P-type R2R3 Myb protein (Fragment)
Length = 221
Score = 75.5 bits (184), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 35/39 (89%), Positives = 36/39 (92%)
Query: 55 MRKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
MRKGPWTEQEDVQLVWFVRL GERRWDFLAKVSGL+ G
Sbjct: 1 MRKGPWTEQEDVQLVWFVRLLGERRWDFLAKVSGLQRSG 39
>Os11g0700500 Similar to Snapdragon myb protein 305 homolog
Length = 237
Score = 66.6 bits (161), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 55 MRKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
MRKGPWTEQED+QLV VRLFG+RRWDF+AKVSGL G
Sbjct: 8 MRKGPWTEQEDLQLVCTVRLFGDRRWDFVAKVSGLNRTG 46
>Os12g0567300 Myb, DNA-binding domain containing protein
Length = 242
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 55 MRKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
+RKGPWTEQED+QLV VRLFGERRWDF+AKVSGL G
Sbjct: 8 IRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTG 46
>AK107214
Length = 242
Score = 66.2 bits (160), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 31/39 (79%), Positives = 34/39 (87%)
Query: 55 MRKGPWTEQEDVQLVWFVRLFGERRWDFLAKVSGLRGGG 93
+RKGPWTEQED+QLV VRLFGERRWDF+AKVSGL G
Sbjct: 8 IRKGPWTEQEDLQLVCTVRLFGERRWDFIAKVSGLNRTG 46
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.323 0.142 0.478
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 2,062,693
Number of extensions: 46587
Number of successful extensions: 196
Number of sequences better than 1.0e-10: 5
Number of HSP's gapped: 196
Number of HSP's successfully gapped: 5
Length of query: 93
Length of database: 17,035,801
Length adjustment: 62
Effective length of query: 31
Effective length of database: 13,798,533
Effective search space: 427754523
Effective search space used: 427754523
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 149 (62.0 bits)