Os12g0567300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Myb, DNA-binding domain containing protein.
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Os12g0567300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Myb, DNA-binding domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 214.27 | 0.688 | 11.1 | -1.84 | 2.41 | -0.119 | 0.164 | -17.2 | -0.0902 | 9.38 | 26.92 | 4325 | -- | -- |
| 187.67 | 0.638 | 10.4 | 2.68 | 2.38 | -2.64 | -0.263 | -- | 1.65 | 9.38 | 31.11 | 21031 | -- | -- |
| 213.89 | 0.681 | 11.1 | -2.02 | 2.38 | 0.0191 | -- | -17.9 | -0.116 | 9.44 | 27.1 | 4520 | -- | -- |
| 181.12 | 0.627 | 10.3 | 2.49 | 2.36 | -2.96 | -- | -- | 1.8 | 9.47 | 31.52 | 19826 | -- | -- |
| 532.11 | 1.07 | 11 | -0.774 | -- | -1.16 | -- | -11.6 | 0.0767 | -- | 25.8 | 5100 | -- | -- |
| 401.9 | 0.94 | 10.6 | 1.28 | 2.45 | -- | 0.301 | -- | 0.579 | 9.64 | -- | -- | -- | -- |
| 402.24 | 0.939 | 10.6 | 1.29 | 2.45 | -- | -- | -- | 0.58 | 9.64 | -- | -- | -- | -- |
| 465.08 | 1 | 10.6 | 2.01 | -- | -3.15 | -- | -- | 0.897 | -- | 24.54 | 820 | -- | -- |
| 314.49 | 0.826 | 10.4 | -- | 2.38 | -2.16 | -- | -- | 1.28 | 9.43 | 32.1 | 18374 | -- | -- |
| 757.32 | 1.29 | 10.7 | 1.27 | -- | -- | -- | -- | 0.584 | -- | -- | -- | -- | -- |
| 445.93 | 0.988 | 10.6 | -- | 2.45 | -- | -- | -- | 0.436 | 9.6 | -- | -- | -- | -- |
| 567.13 | 1.11 | 10.7 | -- | -- | -2.79 | -- | -- | 0.626 | -- | 24.6 | 794 | -- | -- |
| 799.68 | 1.32 | 10.7 | -- | -- | -- | -- | -- | 0.444 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 188.66 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 5 | 2 |
| 14 | 192.00 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 17 | 16 |
| 42 | 194.00 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 43 | 194.44 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 59 | 196.93 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 21 | 13 |
| 65 | 197.13 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 6 | 4 |
| 66 | 197.14 | temperature | 30.0 | 14400 | < th | dose independent | rect. | 8 | 2 |
| 88 | 197.30 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 18 | 17 |
| 95 | 197.82 | temperature | 30.0 | 14400 | > th | dose independent | rect. | 8 | 3 |
| 109 | 198.11 | radiation | 10.0 | 14400 | > th | dose independent | sin | 10 | NA |
| 110 | 198.13 | wind | 1.0 | 43200 | < th | dose independent | rect. | 3 | 2 |
| 115 | 198.67 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 8 | 1 |
| 116 | 198.67 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 10 | 11 |
| 123 | 198.95 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 12 | 1 |
| 124 | 198.97 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 10 | 11 |
| 141 | 199.12 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 12 | 2 |
| 146 | 199.19 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 4 |
| 154 | 199.36 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 3 | 2 |
| 192 | 200.72 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 18 | 17 |
| 203 | 201.00 | temperature | 30.0 | 14400 | > th | dose dependent | rect. | 8 | 3 |
| 230 | 201.33 | wind | 5.0 | 43200 | < th | dose independent | rect. | 7 | 2 |
| 256 | 201.64 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 257 | 201.69 | radiation | 40.0 | 14400 | > th | dose dependent | rect. | 12 | 2 |
| 262 | 201.84 | temperature | 25.0 | 43200 | < th | dose independent | sin | 21 | NA |
| 269 | 201.96 | temperature | 25.0 | 43200 | > th | dose independent | sin | 22 | NA |
| 288 | 202.25 | wind | 5.0 | 43200 | > th | dose independent | rect. | 7 | 2 |
| 319 | 202.60 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 11 |
| 320 | 202.60 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 11 |
| 321 | 202.60 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 11 |
| 360 | 203.07 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 446 | 204.03 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 14 |
| 447 | 204.03 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 14 |
| 472 | 204.20 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 14 |
| 481 | 204.27 | radiation | 10.0 | 14400 | < th | dose dependent | rect. | 6 | 4 |
| 482 | 204.28 | wind | 1.0 | 43200 | > th | dose independent | rect. | 3 | 2 |
| 501 | 204.39 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 8 | 18 |
| 503 | 204.43 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 12 | 14 |
| 505 | 204.43 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 8 | 18 |
| 506 | 204.43 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 8 | 18 |
| 551 | 204.62 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 13 | 13 |
| 554 | 204.62 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 13 | 13 |
| 576 | 204.80 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 581 | 204.81 | temperature | 25.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 586 | 204.85 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 19 | 1 |
| 610 | 204.97 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 10 | 10 |
| 613 | 204.99 | precipitation | 0.1 | 43200 | > th | dose independent | sin | 19 | NA |
| 614 | 204.99 | precipitation | 0.1 | 43200 | < th | dose independent | sin | 19 | NA |
| 617 | 204.99 | precipitation | 0.1 | 43200 | < th | dose dependent | sin | 19 | NA |
| 631 | 205.06 | temperature | 30.0 | 14400 | > th | dose dependent | sin | 9 | NA |
| 717 | 205.42 | wind | 5.0 | 43200 | > th | dose independent | rect. | 5 | 4 |
| 729 | 205.47 | temperature | 25.0 | 43200 | > th | dose independent | rect. | 19 | 1 |
| 731 | 205.48 | temperature | 30.0 | 14400 | < th | dose independent | sin | 9 | NA |
| 759 | 205.58 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 811 | 205.79 | wind | 5.0 | 43200 | < th | dose independent | rect. | 5 | 4 |
| 829 | 205.85 | temperature | 30.0 | 14400 | > th | dose independent | sin | 9 | NA |
| 880 | 206.06 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 17 | 3 |
| 900 | 206.10 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 6 | 1 |
| 950 | 206.29 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 22 | 11 |
| 961 | 206.32 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 24 | 9 |
| 967 | 206.34 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 2 | 7 |