Os01g0975300
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to Typical P-type R2R3 Myb protein (Fragment).
FiT-DB / Search/ Help/ Sample detail
|
Os01g0975300 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : Similar to Typical P-type R2R3 Myb protein (Fragment).
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 408.39 | 0.949 | 9.85 | 4.91 | 0.853 | 2.36 | 0.182 | -3.58 | 2.07 | 0.8 | 9.998 | 1491 | -- | -- |
| 426.29 | 0.962 | 9.84 | 4.86 | 0.805 | 2.22 | -0.277 | -- | 2.07 | 0.272 | 20 | 1570 | -- | -- |
| 408.34 | 0.941 | 9.85 | 4.89 | 0.842 | 2.36 | -- | -3.53 | 2.05 | 0.822 | 10 | 1495 | -- | -- |
| 426.52 | 0.962 | 9.85 | 4.8 | 0.814 | 2.21 | -- | -- | 2.05 | 0.285 | 20 | 1578 | -- | -- |
| 418.94 | 0.953 | 9.82 | 4.9 | -- | 2.96 | -- | -3.17 | 2.09 | -- | 10 | 1589 | -- | -- |
| 541.62 | 1.09 | 9.95 | 4.58 | 1.17 | -- | -0.722 | -- | 1.56 | 0.577 | -- | -- | -- | -- |
| 543.84 | 1.09 | 9.95 | 4.61 | 1.17 | -- | -- | -- | 1.56 | 0.532 | -- | -- | -- | -- |
| 435.54 | 0.972 | 9.82 | 4.57 | -- | 2.97 | -- | -- | 2.04 | -- | 10 | 1616 | -- | -- |
| 950.94 | 1.44 | 9.86 | -- | 1 | 2.44 | -- | -- | 1.83 | 0.016 | 30 | 7713 | -- | -- |
| 629.39 | 1.17 | 9.93 | 4.65 | -- | -- | -- | -- | 1.58 | -- | -- | -- | -- | -- |
| 1102.83 | 1.55 | 10.1 | -- | 1.24 | -- | -- | -- | 1.05 | 0.716 | -- | -- | -- | -- |
| 991.47 | 1.47 | 9.81 | -- | -- | 3.16 | -- | -- | 1.66 | -- | 10 | 1621 | -- | -- |
| 1198.76 | 1.62 | 10 | -- | -- | -- | -- | -- | 1.07 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 393.24 | wind | 1 | 43200 | > th | dose independent | rect. | 5 | 1 |
| 2 | 396.35 | radiation | 20 | 1440 | < th | dose independent | rect. | 9 | 3 |
| 4 | 398.58 | wind | 1 | 43200 | < th | dose independent | rect. | 4 | 3 |
| 5 | 399.44 | humidity | 80 | 4320 | < th | dose independent | rect. | 9 | 1 |
| 6 | 400.25 | wind | 1 | 43200 | > th | dose independent | rect. | 4 | 3 |
| 8 | 401.24 | humidity | 80 | 4320 | > th | dose independent | rect. | 8 | 2 |
| 10 | 402.84 | radiation | 20 | 1440 | > th | dose independent | rect. | 11 | 1 |
| 11 | 403.21 | wind | 1 | 43200 | < th | dose dependent | rect. | 4 | 3 |
| 12 | 403.63 | humidity | 70 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 15 | 405.36 | radiation | 40 | 1440 | < th | dose dependent | rect. | 11 | 1 |
| 20 | 406.43 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 2 |
| 21 | 406.57 | radiation | 20 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 23 | 407.37 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 20 |
| 24 | 407.49 | radiation | 20 | 1440 | > th | dose independent | rect. | 9 | 3 |
| 25 | 407.64 | wind | 1 | 43200 | < th | dose dependent | rect. | 2 | 6 |
| 27 | 407.86 | wind | 1 | 43200 | > th | dose independent | rect. | 2 | 6 |
| 29 | 408.21 | humidity | 70 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 31 | 408.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 16 | 21 |
| 32 | 408.33 | radiation | 20 | 4320 | > th | dose dependent | rect. | 14 | 18 |
| 33 | 408.47 | wind | 1 | 43200 | < th | dose independent | rect. | 2 | 6 |
| 36 | 408.83 | radiation | 10 | 1440 | < th | dose independent | rect. | 8 | 23 |
| 38 | 409.03 | temperature | 30 | 4320 | < th | dose independent | rect. | 10 | 6 |
| 44 | 409.26 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 20 |
| 45 | 409.27 | radiation | 10 | 1440 | < th | dose independent | rect. | 13 | 18 |
| 51 | 409.58 | temperature | 30 | 4320 | < th | dose independent | rect. | 22 | 18 |
| 52 | 409.59 | temperature | 30 | 4320 | < th | dose independent | rect. | 7 | 9 |
| 54 | 409.63 | temperature | 30 | 4320 | < th | dose independent | rect. | 3 | 13 |
| 59 | 409.65 | temperature | 30 | 4320 | < th | dose independent | rect. | 1 | 15 |
| 65 | 409.67 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 18 |
| 71 | 410.01 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 15 |
| 74 | 410.10 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 9 |
| 75 | 410.12 | radiation | 10 | 1440 | < th | dose independent | sin | 20 | NA |
| 81 | 410.32 | radiation | 10 | 1440 | < th | dose independent | rect. | 11 | 23 |
| 82 | 410.45 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 14 |
| 93 | 410.53 | radiation | 20 | 1440 | < th | dose independent | rect. | 8 | 18 |
| 96 | 410.55 | temperature | 30 | 4320 | > th | dose independent | rect. | 10 | 6 |
| 101 | 410.69 | radiation | 10 | 1440 | < th | dose independent | sin | 14 | NA |
| 116 | 410.73 | radiation | 20 | 1440 | < th | dose independent | sin | 1 | NA |
| 162 | 411.32 | temperature | 30 | 4320 | > th | dose independent | rect. | 13 | 2 |
| 191 | 411.73 | radiation | 20 | 1440 | < th | dose independent | rect. | 1 | 16 |
| 194 | 411.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 14 |
| 196 | 411.74 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 23 |
| 202 | 411.78 | radiation | 20 | 1440 | < th | dose dependent | rect. | 15 | 23 |
| 224 | 412.04 | radiation | 10 | 1440 | < th | dose independent | rect. | 5 | 17 |
| 231 | 412.10 | radiation | 10 | 1440 | < th | dose independent | rect. | 5 | 21 |
| 235 | 412.13 | radiation | 20 | 1440 | < th | dose independent | rect. | 3 | 19 |
| 294 | 412.21 | radiation | 20 | 1440 | < th | dose independent | no | NA | NA |
| 348 | 412.26 | radiation | 20 | 1440 | < th | dose independent | rect. | 2 | 11 |
| 357 | 412.26 | radiation | 10 | 1440 | < th | dose dependent | rect. | 19 | 22 |
| 363 | 412.27 | radiation | 10 | 1440 | < th | dose dependent | rect. | 1 | 16 |
| 366 | 412.28 | radiation | 20 | 1440 | < th | dose independent | rect. | 18 | 19 |
| 370 | 412.28 | radiation | 10 | 1440 | < th | dose dependent | rect. | 3 | 14 |
| 398 | 412.39 | radiation | 10 | 1440 | < th | dose dependent | rect. | 11 | 22 |
| 549 | 413.47 | radiation | 20 | 1440 | < th | dose dependent | sin | 2 | NA |
| 574 | 413.70 | radiation | 30 | 4320 | < th | dose dependent | rect. | 15 | 18 |
| 584 | 413.85 | radiation | 20 | 1440 | < th | dose dependent | rect. | 13 | 23 |
| 657 | 414.54 | radiation | 20 | 1440 | < th | dose dependent | rect. | 2 | 20 |
| 660 | 414.55 | radiation | 10 | 1440 | < th | dose dependent | rect. | 4 | 18 |
| 713 | 414.63 | radiation | 10 | 1440 | < th | dose dependent | no | NA | NA |
| 787 | 414.74 | radiation | 1 | 1440 | > th | dose dependent | rect. | 10 | 3 |
| 827 | 415.03 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 7 |
| 839 | 415.08 | humidity | 80 | 4320 | > th | dose independent | rect. | 7 | 4 |
| 848 | 415.13 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 12 |
| 851 | 415.14 | radiation | 10 | 1440 | < th | dose independent | rect. | 15 | 10 |
| 862 | 415.20 | temperature | 30 | 4320 | < th | dose independent | rect. | 13 | 23 |
| 866 | 415.23 | radiation | 30 | 4320 | < th | dose independent | rect. | 14 | 1 |
| 896 | 415.41 | radiation | 10 | 43200 | > th | dose independent | rect. | 12 | 22 |
| 938 | 415.78 | temperature | 30 | 4320 | < th | dose independent | sin | 0 | NA |