BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0106100 Os05g0106100|AK063178
(166 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteo... 263 4e-71
Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteo... 257 3e-69
Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteo... 256 6e-69
Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteo... 255 9e-69
Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteo... 228 1e-60
>Os05g0106100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 166
Score = 263 bits (672), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 139/166 (83%), Positives = 139/166 (83%)
Query: 1 MSSSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPV 60
MSSSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPV
Sbjct: 1 MSSSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPV 60
Query: 61 VMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDA 120
VMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAH MAIGIVGDA
Sbjct: 61 VMAGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDA 120
Query: 121 GVRANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 166
GVRANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 121 GVRANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 166
>Os02g0550100 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 167
Score = 257 bits (656), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 135/164 (82%), Positives = 137/164 (83%)
Query: 3 SSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
+STFSGDETAPFFGFLGAA+ALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 4 ASTFSGDETAPFFGFLGAAAALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 63
Query: 63 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 122
AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAH MAIGIVGDAGV
Sbjct: 64 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 123
Query: 123 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 166
RANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 124 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 167
>Os12g0168900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 256 bits (654), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 135/164 (82%), Positives = 136/164 (82%)
Query: 3 SSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
SS FSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 2 SSVFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
Query: 63 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 122
AGVLGIYGLIIAVIISTGINPKAKPY+LFDGYAH MAIGIVGDAGV
Sbjct: 62 AGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 121
Query: 123 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 166
RANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 122 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
>Os11g0169900 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 255 bits (652), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 134/164 (81%), Positives = 136/164 (82%)
Query: 3 SSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
SS FSGDETAPFFGFLGAASAL+FSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM
Sbjct: 2 SSVFSGDETAPFFGFLGAASALIFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 61
Query: 63 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 122
AGVLGIYGLIIAVIISTGINPKAKPY+LFDGYAH MAIGIVGDAGV
Sbjct: 62 AGVLGIYGLIIAVIISTGINPKAKPYYLFDGYAHLSSGLACGLAGLAAGMAIGIVGDAGV 121
Query: 123 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 166
RANAQQPKLFVGM YGLIVGIILSSRAGQSRAD
Sbjct: 122 RANAQQPKLFVGMILILIFAEALALYGLIVGIILSSRAGQSRAD 165
>Os01g0962300 Similar to Vacuolar ATP synthase 16 kDa proteolipid subunit (EC
3.6.3.14) (V- ATPase 16 kDa proteolipid subunit)
(Fragment)
Length = 165
Score = 228 bits (581), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/164 (73%), Positives = 127/164 (77%)
Query: 3 SSTFSGDETAPFFGFLGAASALVFSCMGAAYGTAKSGVGVASMGVMRPELVMKSIVPVVM 62
SSTF+GDE APF GF+GAA ALVFSCMGAAYGTA+SGVGVA MGVMRPELVMKSIVPVVM
Sbjct: 2 SSTFNGDEFAPFLGFIGAALALVFSCMGAAYGTARSGVGVAHMGVMRPELVMKSIVPVVM 61
Query: 63 AGVLGIYGLIIAVIISTGINPKAKPYFLFDGYAHXXXXXXXXXXXXXXXMAIGIVGDAGV 122
AGVLGIYGLIIAVII+TGINP A PY+ FDG H +AIG+VGDAGV
Sbjct: 62 AGVLGIYGLIIAVIITTGINPTAMPYYHFDGSVHLAAGLATGLCALAAGLAIGVVGDAGV 121
Query: 123 RANAQQPKLFVGMXXXXXXXXXXXXYGLIVGIILSSRAGQSRAD 166
RANAQQPKLFVGM YGLIVGIILSSRAGQSRA
Sbjct: 122 RANAQQPKLFVGMILILIFAEALGLYGLIVGIILSSRAGQSRAH 165
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.324 0.139 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 4,015,299
Number of extensions: 126612
Number of successful extensions: 302
Number of sequences better than 1.0e-10: 6
Number of HSP's gapped: 291
Number of HSP's successfully gapped: 6
Length of query: 166
Length of database: 17,035,801
Length adjustment: 93
Effective length of query: 73
Effective length of database: 12,179,899
Effective search space: 889132627
Effective search space used: 889132627
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 152 (63.2 bits)