BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os05g0102800 Os05g0102800|AK121634
(955 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os05g0102800 Similar to AML1 1809 0.0
Os02g0517531 RNA-binding region RNP-1 (RNA recognition moti... 643 0.0
Os02g0719800 RNA-binding region RNP-1 (RNA recognition moti... 436 e-122
Os02g0319100 RNA-binding region RNP-1 (RNA recognition moti... 369 e-102
Os01g0907900 Similar to Terminal ear1 128 2e-29
Os09g0531200 RNA recognition motif 2 domain containing protein 80 5e-15
Os02g0157900 71 5e-12
>Os05g0102800 Similar to AML1
Length = 955
Score = 1809 bits (4685), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 879/955 (92%), Positives = 879/955 (92%)
Query: 1 MVIASGAIDRRHLXXXXXXXXXXXXXXXXQDLVPTERQVGFWNSESMVDHKGSKSVFASP 60
MVIASGAIDRRHL QDLVPTERQVGFWNSESMVDHKGSKSVFASP
Sbjct: 1 MVIASGAIDRRHLSPFTPTSDDSSSSFFSQDLVPTERQVGFWNSESMVDHKGSKSVFASP 60
Query: 61 LEKIQPNGANHAGDPETPGGQAFKGLDILSLSNLMRQENASGSPSLSWGEILTNPISRLG 120
LEKIQPNGANHAGDPETPGGQAFKGLDILSLSNLMRQENASGSPSLSWGEILTNPISRLG
Sbjct: 61 LEKIQPNGANHAGDPETPGGQAFKGLDILSLSNLMRQENASGSPSLSWGEILTNPISRLG 120
Query: 121 LSTRETAFVEPTTADQHVPXXXXXXXXXXXXXXXXXXXREIVSGVLCQSTGTHTSIYDSD 180
LSTRETAFVEPTTADQHVP REIVSGVLCQSTGTHTSIYDSD
Sbjct: 121 LSTRETAFVEPTTADQHVPGYGKGLSSSSLSEVFSGKSREIVSGVLCQSTGTHTSIYDSD 180
Query: 181 EPLESMEAIEAQTXXXXXXXXXXXXXXXXXXXFEFTGMSTNQDDADEDIFCTGGGMELEN 240
EPLESMEAIEAQT FEFTGMSTNQDDADEDIFCTGGGMELEN
Sbjct: 181 EPLESMEAIEAQTIGDLLPDDDDDLISGIADGFEFTGMSTNQDDADEDIFCTGGGMELEN 240
Query: 241 NDSVKGDKVQDGSFKSQISSGHSINKQPSRTLVVRNITANIEDSDLTVLFQQYGDIRMLY 300
NDSVKGDKVQDGSFKSQISSGHSINKQPSRTLVVRNITANIEDSDLTVLFQQYGDIRMLY
Sbjct: 241 NDSVKGDKVQDGSFKSQISSGHSINKQPSRTLVVRNITANIEDSDLTVLFQQYGDIRMLY 300
Query: 301 TSFKHHGFVTVSYYDIRAAQNAMRALHSKPLGLMKLDVQFSFPKENVPGKDIDKGMXXXX 360
TSFKHHGFVTVSYYDIRAAQNAMRALHSKPLGLMKLDVQFSFPKENVPGKDIDKGM
Sbjct: 301 TSFKHHGFVTVSYYDIRAAQNAMRALHSKPLGLMKLDVQFSFPKENVPGKDIDKGMLVVS 360
Query: 361 XXXXXXXXXXXXQMLSVYGDVKEISSSPISCTKKFVEFYDVRAAEEALHDLNKGGISGPK 420
QMLSVYGDVKEISSSPISCTKKFVEFYDVRAAEEALHDLNKGGISGPK
Sbjct: 361 NIDSSISNDDLLQMLSVYGDVKEISSSPISCTKKFVEFYDVRAAEEALHDLNKGGISGPK 420
Query: 421 FKVELSQHGEAGSCLRQQHSREWKQDSLPHQPKNSSPGTIGKLGTKCQDNSTVHNLFSPV 480
FKVELSQHGEAGSCLRQQHSREWKQDSLPHQPKNSSPGTIGKLGTKCQDNSTVHNLFSPV
Sbjct: 421 FKVELSQHGEAGSCLRQQHSREWKQDSLPHQPKNSSPGTIGKLGTKCQDNSTVHNLFSPV 480
Query: 481 NQQLESPTQCISTTGPQILSSPIRIKSTLQHNNQASVGDLSGPLGQGNFGRGIQTLHPRS 540
NQQLESPTQCISTTGPQILSSPIRIKSTLQHNNQASVGDLSGPLGQGNFGRGIQTLHPRS
Sbjct: 481 NQQLESPTQCISTTGPQILSSPIRIKSTLQHNNQASVGDLSGPLGQGNFGRGIQTLHPRS 540
Query: 541 LPEHHNRICNNSKSMTVSGRNASSRQDGVDHNIQKVGPAGFCGHSFDQNNEAFGFTEIGS 600
LPEHHNRICNNSKSMTVSGRNASSRQDGVDHNIQKVGPAGFCGHSFDQNNEAFGFTEIGS
Sbjct: 541 LPEHHNRICNNSKSMTVSGRNASSRQDGVDHNIQKVGPAGFCGHSFDQNNEAFGFTEIGS 600
Query: 601 CPLHGYHYTWNHTNVFPQSPSAPILWSNLQHPMHVHSYPGVPPHMLNTGSYPMDQHHLGS 660
CPLHGYHYTWNHTNVFPQSPSAPILWSNLQHPMHVHSYPGVPPHMLNTGSYPMDQHHLGS
Sbjct: 601 CPLHGYHYTWNHTNVFPQSPSAPILWSNLQHPMHVHSYPGVPPHMLNTGSYPMDQHHLGS 660
Query: 661 APDNGGSFGNVHSFHPGSLGSIGLHGSPQLYPSELSAFASSRGNFREALFSPVGGGFQSL 720
APDNGGSFGNVHSFHPGSLGSIGLHGSPQLYPSELSAFASSRGNFREALFSPVGGGFQSL
Sbjct: 661 APDNGGSFGNVHSFHPGSLGSIGLHGSPQLYPSELSAFASSRGNFREALFSPVGGGFQSL 720
Query: 721 QQMCNAINGRNPMIHVSTSYDATNDRMRSRRHDGNPAQSENKRQFELDIDRIAKGEDSRT 780
QQMCNAINGRNPMIHVSTSYDATNDRMRSRRHDGNPAQSENKRQFELDIDRIAKGEDSRT
Sbjct: 721 QQMCNAINGRNPMIHVSTSYDATNDRMRSRRHDGNPAQSENKRQFELDIDRIAKGEDSRT 780
Query: 781 TLMIKNIPNKYNCKLLLAVIDENHRGTYDFIYLPIDFKNKCNVGYAFINMTDPQHIIPFY 840
TLMIKNIPNKYNCKLLLAVIDENHRGTYDFIYLPIDFKNKCNVGYAFINMTDPQHIIPFY
Sbjct: 781 TLMIKNIPNKYNCKLLLAVIDENHRGTYDFIYLPIDFKNKCNVGYAFINMTDPQHIIPFY 840
Query: 841 KTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQNSSLMNEDKWCRPMLFHKDGPNAGD 900
KTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQNSSLMNEDKWCRPMLFHKDGPNAGD
Sbjct: 841 KTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQNSSLMNEDKWCRPMLFHKDGPNAGD 900
Query: 901 QEPFPVGNNVRSRAGRNRSLISLDTKDAXXXXXXDQESNSVGTANSTCRTTLEQT 955
QEPFPVGNNVRSRAGRNRSLISLDTKDA DQESNSVGTANSTCRTTLEQT
Sbjct: 901 QEPFPVGNNVRSRAGRNRSLISLDTKDASPSSSPDQESNSVGTANSTCRTTLEQT 955
>Os02g0517531 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1001
Score = 643 bits (1658), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/979 (42%), Positives = 550/979 (56%), Gaps = 72/979 (7%)
Query: 3 IASGAIDRRHLXXXXXXXXXXXXXXXXQDLVPTERQVGFWNSESMVDHKGSKSVFASPLE 62
+ S +D+RH + +PTERQVGFW ES+ H GSKSV +SP+E
Sbjct: 1 MPSQVMDQRHHMSQYSHPTLAASSFSEELRLPTERQVGFWKQESLPHHMGSKSVASSPIE 60
Query: 63 KIQPNGANHAGDPETPGGQAFKGLD---ILSLSN-LMRQENASGSPSLSWGEILTNPISR 118
K QP G AG E Q +K D SL + L QE + P W P
Sbjct: 61 KPQPIGTRMAGRLELL--QPYKLRDQGAAFSLEHKLFGQERHANLPPSPW-----RPDQE 113
Query: 119 LGLSTRETAFVEPTTADQHV-PXXXXXXXXXXXXXXXXXXXREI----VSGVLCQSTGTH 173
G T + +D + P +++ +G++ QS
Sbjct: 114 TGRQTDSSLKSAALFSDGRINPNGAYNENGLFSSSVSDIFDKKLRLTSKNGLVGQSIEKV 173
Query: 174 TSIYDSDEPLESMEAIEAQTXXXXXXXXXXXXXXXXXXXFEFTGMSTNQDDADEDIFCTG 233
+ DEP E E IEAQ + + N+DDAD+DIF TG
Sbjct: 174 DLNHVDDEPFELTEEIEAQIIGNLLPDDDDLLSGVVDE-VGYPTNANNRDDADDDIFYTG 232
Query: 234 GGMELENNDSVKGDKVQD------GSFKSQISSGHSINKQPSRTLVVRNITANIEDSDLT 287
GGMELE +++ K + G ++ H +QPSRTL VRNI +N+EDS+L
Sbjct: 233 GGMELETDENKKLQEFNGSANDGIGLLNGVLNGEHLYREQPSRTLFVRNINSNVEDSELK 292
Query: 288 VLFQQYGDIRMLYTSFKHHGFVTVSYYDIRAAQNAMRALHSKPLGLMKLDVQFSFPKENV 347
+LF+ +GDIR LYT+ KH GFV +SYYDIR+A NA L +K L KLD+ +S PK+N
Sbjct: 293 LLFEHFGDIRALYTACKHRGFVMISYYDIRSALNAKMELQNKALRRRKLDIHYSIPKDNP 352
Query: 348 PGKDIDKGMXXXXXXXXXXXXXXXXQMLSVYGDVKEISSSPISCTKKFVEFYDVRAAEEA 407
KDI++G ++ YG++KEI +P K +EFYDVRAAE A
Sbjct: 353 SEKDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKEIRDTPQKGHHKIIEFYDVRAAEAA 412
Query: 408 LHDLNKGGISGPKFKVELSQHGEAGSCLRQQHSREWKQDSLP----HQPKNSSP------ 457
L LN+ I+G K K+E S+ G A L Q S E Q+ P SSP
Sbjct: 413 LRALNRNDIAGKKIKLETSRLG-AARRLSQHMSSELCQEEFGVCKLGSPSTSSPPIASFG 471
Query: 458 -GTIGKLGTKCQDNSTVHNLFS----PVNQQLESPTQCISTTGPQILSSPIRIKSTLQHN 512
+ + + +N ++ + S ++Q E+ +S+T PQ LS+PI I S H+
Sbjct: 472 STNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQSLSTPIGISSGATHS 531
Query: 513 NQASVGDLSGPLGQGN-----FGRGIQTLHPRSLPEHHNRICN------NSKSMTVSGRN 561
NQA++G++S LG+ N +G+ LHP SLPE HN + N NS + V+G N
Sbjct: 532 NQAALGEISQSLGRMNGHMNYSFQGMSALHPHSLPEVHNGVNNGVPYNLNSMAQVVNGTN 591
Query: 562 ASSRQDGVDHNIQKVGPAGFCGHSFDQNNEAFGFTEIGSCPLHGYHYTWNHTNVFPQSPS 621
+ + + + ++ KVG GHSFD+ A GF+ GS + G+ WN+++ F P+
Sbjct: 592 SRTAEAVDNRHLHKVGSGNLNGHSFDRAEGALGFSRSGSSSVRGHQLMWNNSSNFHHHPN 651
Query: 622 APILWSN---------LQHPMHVHSYPGVPPHMLNTGSYPMDQHHLGSAP---------- 662
+P+LW + + P +H P P + PM H+GSAP
Sbjct: 652 SPVLWPSPGSFVNNVPSRSPAQMHGVPRAPSSHMIDNVLPMHHLHVGSAPAINPSLWDRR 711
Query: 663 -DNGGSFGNVHSFHPGSLGSIGLHGSPQLYPSELS-AFASSRGNFREALFSPVGGGFQSL 720
G +FHPGS+GS+G GSPQL+ EL+ + + GN + SP G S
Sbjct: 712 HGYAGELTEAPNFHPGSVGSMGFPGSPQLHSMELNNIYPQTGGNCMDPTVSPAQIGGPSP 771
Query: 721 QQMCNAINGRNPMIHVSTSYDATNDRMRSRRHDGNPAQSENKRQFELDIDRIAKGEDSRT 780
QQ + +GRNPM+ + S+D+ +RMRSRR+D N QS+NK+Q+ELD+DRI +G+DSRT
Sbjct: 772 QQRGSMFHGRNPMVPL-PSFDSPGERMRSRRNDSNGNQSDNKKQYELDVDRIVRGDDSRT 830
Query: 781 TLMIKNIPNKYNCKLLLAVIDENHRGTYDFIYLPIDFKNKCNVGYAFINMTDPQHIIPFY 840
TLMIKNIPNKY K+LLA IDENH+GTYDFIYLPIDFKNKCNVGYAFINMT+PQHIIPFY
Sbjct: 831 TLMIKNIPNKYTSKMLLAAIDENHKGTYDFIYLPIDFKNKCNVGYAFINMTNPQHIIPFY 890
Query: 841 KTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQNSSLMNEDKWCRPMLFHKDGPNAGD 900
+TFNGKKWEKFNSEKVASLAYARIQG+SALIAHFQNSSLMNEDK CRP+LFH DGPNAGD
Sbjct: 891 QTFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSSLMNEDKRCRPILFHSDGPNAGD 950
Query: 901 QEPFPVGNNVRSRAGRNRS 919
QEPFP+G N+R+R+GR+R+
Sbjct: 951 QEPFPMGTNIRARSGRSRA 969
>Os02g0719800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 848
Score = 436 bits (1120), Expect = e-122, Method: Compositional matrix adjust.
Identities = 288/736 (39%), Positives = 401/736 (54%), Gaps = 87/736 (11%)
Query: 213 FEFTGMSTNQDDADE-DIFCTGGGMELENN---------------DSVKGDKVQ---DGS 253
E G + + ++ +E D+F +GGGMEL+ + D ++G+ V +
Sbjct: 121 IEPAGQTNSMEELEEFDVFGSGGGMELDTDPVESITAGLGNTSIADGLRGNGVNHFGPSN 180
Query: 254 FKSQISSGHSINKQPSRTLVVRNITANIEDSDLTVLFQQYGDIRMLYTSFKHHGFVTVSY 313
S ++ H + PSRTL VRNI +N++D++L LF+QYGDIR LYT+ KH GFV +SY
Sbjct: 181 SASTVAGEHPYGEHPSRTLFVRNINSNVDDTELRSLFEQYGDIRTLYTATKHRGFVMISY 240
Query: 314 YDIRAAQNAMRALHSKPLGLMKLDVQFSFPKENVPGKDIDKGMXXXXXXXXXXXXXXXXQ 373
+DIRAA+ AMR L +KPL KLD+ FS PKEN KD+++G Q
Sbjct: 241 FDIRAARGAMRGLQNKPLRRRKLDIHFSIPKENPSDKDLNQGTLVIFNLDPSVSNEEVRQ 300
Query: 374 MLSVYGDVKEISSSPISCTKKFVEFYDVRAAEEALHDLNKGGISGPKFKVELSQHGEAGS 433
+ YG+VKEI +P KF+EFYDVRAAE AL LNK I+G + K+E S+ G
Sbjct: 301 IFGTYGEVKEIRETPNKKHHKFIEFYDVRAAEAALRSLNKSEIAGKRIKLEPSRPGGTRR 360
Query: 434 CLRQQHSREWKQDS-----LPH--QPKNSSPGTIGKLGTKCQDNS-TVHNLFSPVNQQLE 485
L QQ + QD +PH P SSP G Q +S T +NL N
Sbjct: 361 NLMQQLGHDIDQDEPRSYRIPHVGSPIASSPP-----GAWAQYSSPTDNNLLQAFNA--- 412
Query: 486 SPT-QCISTTG--PQILSSPIRIKSTLQHNNQASVGDLSGPLGQGNFGRGIQTLHPRSLP 542
SPT +S G P ++S+ ++I + +N + + N G H S
Sbjct: 413 SPTGNGMSPIGMPPSLISNAVKIAPIGKDSNWSKYDKV---FSNNNQPHGAAFQHSHSYQ 469
Query: 543 EHHNRICNNSKSMTVSGRNA--SSRQDGVDHNIQKVGPAGFCGHSFDQNNEAFGFTEIGS 600
+H + ++S T++G S + +H + GH+ N + G
Sbjct: 470 DHKSEHMSSSPG-TLTGPEFLWGSPKPYSEHAQSPIWRPPAIGHAIPSNTRSQG------ 522
Query: 601 CPLHGYHYTWNHTNVFPQSPSAPILWSNLQHPMHVHSYPGVPPHMLNTGSYPMDQHHLGS 660
G Y ++F + H HV S P P + H G
Sbjct: 523 ---QGLLYGGRQASLFGSQ--------DQLHHHHVGSAPSGAPF----------ESHFGF 561
Query: 661 APD-------NGGSFGNVHSFHPGSLGS-IGLHGSPQLYPSELSAFASSRGNFREALFSP 712
P+ N FGN+ + G G+ + L+ + + + +SA + + + + F P
Sbjct: 562 LPESPETSYMNQVRFGNIGNIGSGRNGTGLMLNMAARASVNPVSALSGNMSDNNSSSFRP 621
Query: 713 VGGGFQSLQQMCNAINGRNPMIHVSTSY--DATNDRMRSRRHDGNPAQSENKRQFELDID 770
+ ++ + G NP S+ D + +R R+RR D + Q+++K+Q++LD++
Sbjct: 622 ILS-----PRLGQSFYG-NPTYQGPGSFGLDNSIERGRNRRVDSSVFQADSKKQYQLDLE 675
Query: 771 RIAKGEDSRTTLMIKNIPNKYNCKLLLAVIDENHRGTYDFIYLPIDFKNKCNVGYAFINM 830
+I KG+D+RTTLMIKNIPNKY K+LLA IDE H+GTYDF YLPIDFKNKCNVGYAFINM
Sbjct: 676 KIRKGDDTRTTLMIKNIPNKYTSKMLLAAIDEFHKGTYDFFYLPIDFKNKCNVGYAFINM 735
Query: 831 TDPQHIIPFYKTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQNSSLMNEDKWCRPML 890
P HI+ FY+ FNGKKWEKFNSEKVASLAYARIQGR+ALI+HFQNSSLMNEDK CRP+L
Sbjct: 736 ISPVHIVSFYQAFNGKKWEKFNSEKVASLAYARIQGRTALISHFQNSSLMNEDKRCRPIL 795
Query: 891 FHKDGPNAGDQEPFPV 906
FH +GP+AG+QEPFP+
Sbjct: 796 FHSNGPDAGNQEPFPI 811
>Os02g0319100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 811
Score = 369 bits (947), Expect = e-102, Method: Compositional matrix adjust.
Identities = 257/712 (36%), Positives = 350/712 (49%), Gaps = 93/712 (13%)
Query: 213 FEFTGMSTNQDDADE-DIFCTGGGMELE-------------------NNDSVKGDKVQDG 252
F+ + T ++++E D+F GGMEL+ S +Q+G
Sbjct: 118 FDHVKLRTQVEESEEYDVFRNSGGMELDIDPLESITFGTAKASLVNGTGSSTNQYSIQNG 177
Query: 253 SFKSQISSGHSINKQPSRTLVVRNITANIEDSDLTVLFQQYGDIRMLYTSFKHHGFVTVS 312
+ ++ H + PSRTL VRNI +N+EDS+L LF+ +GDIR +YT+ KH GFV +S
Sbjct: 178 A--GTVTGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEPFGDIRSMYTATKHRGFVMIS 235
Query: 313 YYDIRAAQNAMRALHSKPLGLMKLDVQFSFPKENVPGKDIDKGMXXXXXXXXXXXXXXXX 372
YYDIR A+NA AL SKPL KLD+ +S PKEN KD+++G
Sbjct: 236 YYDIRHARNAKTALQSKPLRRRKLDIHYSIPKENPSDKDMNQGTLVIFNLEPAVSNEELL 295
Query: 373 QMLSVYGDVKEISSSPISCTKKFVEFYDVRAAEEALHDLNKGGISGPKFKVELSQHGEAG 432
Q+ +G+V+EI +P +F+EFYDVRAAE AL LNK I+G + K+E
Sbjct: 296 QIFGAFGEVREIRETPHKRHHRFIEFYDVRAAESALRSLNKSDIAGKRVKLE-------- 347
Query: 433 SCLRQQHSREWKQDSLPHQPKNSSPGTIGKLGTKCQDNSTVHNLFSPVNQQLESPTQCIS 492
P +P + I + + + T HN F + SP S
Sbjct: 348 ----------------PSRPGGARRSFIQHFNHEFEQDETKHNSFQIGSPSANSPPSLWS 391
Query: 493 TTGPQILSSPIRIKSTLQHNNQASVGDLSGPLGQGNFGRGIQTLHPRSLPEHHNRICNNS 552
G SP N A G +S PLG + P P + NN
Sbjct: 392 QLG-----SPTDENKLNALNETAFNGGMS-PLGSNHLSGFSSGYPPMKSPVGKSSYWNN- 444
Query: 553 KSMTVSGRNASSRQDGVDHNIQKVGPAGFCGHSFDQNNEAFGFTEIGSCPLHGYHYTWNH 612
R D + H P HSF +++ G S + + +
Sbjct: 445 ------------RADNIFHG----SPTLHNSHSFPEHH---GGIISASPLVSSAASSAST 485
Query: 613 TNVFPQSPSAPILWSNLQHPMHVHSYPG-VPPHMLNTGSYPMDQHHLGS--APDNGGSFG 669
+ F LW N + + H P + L+ +P +Q S + GSFG
Sbjct: 486 ASGFTALTGTSFLWGN-NNNLRDHGQPSSIQSQALSNSLFPNNQPQRQSNLYQNLRGSFG 544
Query: 670 NVHSFHPGSLGSIGLHGSPQLYPSE--LSAFASS--RGNFREALFSPVGGGFQSLQQMCN 725
F ++GS +P ++P E F+ S R+ F G S M N
Sbjct: 545 ASEHFSQFNVGS-----APSVFPFESNFGYFSDSPDTSYMRQGKFGGTGPTRVSGSLMTN 599
Query: 726 AINGRNPMIHV------STSYDATNDRMRSRRHDGNPAQSENKRQFELDIDRIAKGEDSR 779
G P I+V S ++ DR R++ + Q +++ Q++LD+++I G+D+R
Sbjct: 600 F--GAYPRINVASMQNGSVGFEGLLDRGRNQTVGNSGCQEDSRVQYQLDLEKIIAGKDTR 657
Query: 780 TTLMIKNIPNKYNCKLLLAVIDENHRGTYDFIYLPIDFKNKCNVGYAFINMTDPQHIIPF 839
TTLMIKNIPNKY +LL VIDE H GTYDF YLPIDFKNKCNVGYAFINM P +I+ F
Sbjct: 658 TTLMIKNIPNKYTSNMLLEVIDETHEGTYDFFYLPIDFKNKCNVGYAFINMASPGYIVSF 717
Query: 840 YKTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQNSSLMNEDKWCRPMLF 891
+K F G+KWEKFNSEKV SLAYARIQG++AL+ HFQNSSLMNEDK CRPMLF
Sbjct: 718 FKAFAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSSLMNEDKRCRPMLF 769
>Os01g0907900 Similar to Terminal ear1
Length = 683
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 88/152 (57%), Gaps = 19/152 (12%)
Query: 773 AKGEDSRTTLMIKNIPNKYNCKLLLAVIDENH------------------RGTYDFIYLP 814
A +D+RTT+MI+NIPNKY+ KLLL ++D NH +YDF+YLP
Sbjct: 451 ASCKDTRTTVMIRNIPNKYSQKLLLNMLD-NHCILSNQQIEASCEDEAQPFSSYDFLYLP 509
Query: 815 IDFKNKCNVGYAFINMTDPQHIIPFYKTFNGKKWEKFNSEKVASLAYARIQGRSALIAHF 874
IDF NKCNVGY F+N+T P+ + YK F+ + WE FNS K+ + YAR+QG AL HF
Sbjct: 510 IDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHF 569
Query: 875 QNSSLMNEDKWCRPMLFHKDGPNAGDQEPFPV 906
+NS + P++F EP P+
Sbjct: 570 KNSKFPCDSDEYLPVVFSPPRDGKLLTEPVPL 601
>Os09g0531200 RNA recognition motif 2 domain containing protein
Length = 323
Score = 80.5 bits (197), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 67/142 (47%), Gaps = 21/142 (14%)
Query: 780 TTLMIKNIPNKYNCKLLLAVIDENH-------------------RGTYDFIYLPIDFKNK 820
T+LMI+NIPNK+ L+A++D++ + YDF Y+PIDFK
Sbjct: 170 TSLMIRNIPNKFLKARLMAILDQHCADENGKCHRRGGGGGRSVVKSEYDFFYVPIDFKTG 229
Query: 821 CNVGYAFINMTDPQHIIPFYKTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQNSSLM 880
N GYAF+NMT +W+ S KV + A IQG A +AHF S
Sbjct: 230 FNKGYAFVNMTTATAARRLRAFLQDHRWDAAMSGKVCDVVPAAIQGLDAFVAHFSASCFP 289
Query: 881 NEDKWCRPMLFHKDGPNAGDQE 902
K P+ F + P G+Q+
Sbjct: 290 CRTKEFLPVWF--EPPRDGEQQ 309
>Os02g0157900
Length = 389
Score = 70.9 bits (172), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 81/156 (51%), Gaps = 25/156 (16%)
Query: 774 KGEDSRTTLMIKNIPNKYNCKLLLAVIDEN-------------HRGTYDFIYLPIDF--- 817
K + + TT+M++NIPNK ++ ++D++ R YD +Y+ +DF
Sbjct: 210 KLKPAHTTVMVRNIPNKLTRSDMVRLLDDHCARENRRRGRGGEPRAEYDLVYVRMDFGMC 269
Query: 818 --KNKCNVGYAFINMTDPQHIIPFYKTFNGKKWEK--FNSEKVASLAYARIQGRSALIAH 873
+ N+GYAF+N T + + +G +W++ F+S K+ + ARIQG+ AL+ H
Sbjct: 270 NKERSSNMGYAFVNFTTAEAARGLQRALHGCRWKRSAFDSGKIIDIRAARIQGKDALVRH 329
Query: 874 FQNSSL--MNEDKWCRPMLFH--KDGPNAGDQEPFP 905
F ++ + D++ P +F +DG AG P P
Sbjct: 330 FGRTTYYECDTDEYL-PAVFSPPRDGSTAGAGAPSP 364
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.395
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 32,423,881
Number of extensions: 1414500
Number of successful extensions: 3067
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 3033
Number of HSP's successfully gapped: 7
Length of query: 955
Length of database: 17,035,801
Length adjustment: 110
Effective length of query: 845
Effective length of database: 11,292,261
Effective search space: 9541960545
Effective search space used: 9541960545
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 161 (66.6 bits)