Os02g0319100
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
FiT-DB / Search/ Help/ Sample detail
|
Os02g0319100 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
|
Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.
|
|
log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
|
_____ |
|
__
Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = > th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24.64 | 0.233 | 11.8 | -0.024 | 0.525 | 0.0528 | -0.43 | 2.02 | 0.158 | 12.1 | 28.05 | 1366 | -- | -- |
| 25.37 | 0.235 | 11.9 | -0.487 | 0.506 | 0.289 | -0.41 | -- | 0.044 | 11.9 | 25.7 | 6309 | -- | -- |
| 25.41 | 0.235 | 11.8 | -0.00233 | 0.529 | 0.0449 | -- | 2.19 | 0.161 | 12.1 | 27.83 | 1320 | -- | -- |
| 25.53 | 0.235 | 11.9 | -0.506 | 0.475 | 0.315 | -- | -- | 0.0785 | 11.8 | 29.6 | 6101 | -- | -- |
| 41.61 | 0.302 | 11.9 | -0.556 | -- | 0.595 | -- | -1.32 | 0.0602 | -- | 27.83 | 1320 | -- | -- |
| 28.8 | 0.252 | 11.9 | -0.389 | 0.495 | -- | -0.498 | -- | 0.0765 | 11.9 | -- | -- | -- | -- |
| 29.88 | 0.256 | 11.9 | -0.409 | 0.497 | -- | -- | -- | 0.0743 | 11.9 | -- | -- | -- | -- |
| 41.13 | 0.299 | 11.9 | -0.513 | -- | 0.317 | -- | -- | 0.0912 | -- | 29.7 | 6050 | -- | -- |
| 31.63 | 0.262 | 11.9 | -- | 0.505 | 0.24 | -- | -- | 0.143 | 11.9 | 30.31 | 6126 | -- | -- |
| 45.42 | 0.315 | 11.9 | -0.424 | -- | -- | -- | -- | 0.0677 | -- | -- | -- | -- | -- |
| 34.29 | 0.274 | 11.9 | -- | 0.502 | -- | -- | -- | 0.12 | 11.9 | -- | -- | -- | -- |
| 47.35 | 0.32 | 11.9 | -- | -- | 0.318 | -- | -- | 0.0343 | -- | 33.15 | 7429 | -- | -- |
| 50.17 | 0.331 | 11.9 | -- | -- | -- | -- | -- | 0.115 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
|
Histogram 
|
Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 23.46 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 6 |
| 3 | 23.59 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 17 | 2 |
| 5 | 23.63 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 9 | 23.70 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 4 |
| 10 | 23.71 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 4 |
| 14 | 23.73 | wind | 9.0 | 43200 | > th | dose dependent | rect. | 15 | 15 |
| 15 | 23.75 | wind | 7.0 | 43200 | > th | dose dependent | rect. | 17 | 1 |
| 16 | 23.77 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 21 | 6 |
| 23 | 23.80 | wind | 9.0 | 43200 | > th | dose dependent | sin | 14 | NA |
| 40 | 23.86 | radiation | 1.0 | 43200 | < th | dose dependent | rect. | 24 | 3 |
| 48 | 23.93 | wind | 5.0 | 14400 | > th | dose independent | rect. | 17 | 21 |
| 49 | 23.95 | wind | 7.0 | 43200 | < th | dose independent | rect. | 13 | 1 |
| 52 | 23.96 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 13 |
| 53 | 23.97 | wind | 7.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 62 | 24.00 | wind | 9.0 | 43200 | > th | dose independent | rect. | 17 | 1 |
| 64 | 24.00 | wind | 5.0 | 14400 | > th | dose independent | rect. | 20 | 20 |
| 69 | 24.01 | wind | 5.0 | 14400 | < th | dose independent | rect. | 17 | 21 |
| 79 | 24.04 | temperature | 25.0 | 1440 | > th | dose dependent | rect. | 4 | 3 |
| 80 | 24.04 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 13 | 5 |
| 86 | 24.06 | wind | 9.0 | 43200 | > th | dose independent | sin | 14 | NA |
| 90 | 24.07 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 20 | 1 |
| 94 | 24.08 | wind | 5.0 | 14400 | < th | dose independent | rect. | 20 | 19 |
| 113 | 24.12 | wind | 7.0 | 43200 | > th | dose independent | rect. | 19 | 2 |
| 114 | 24.12 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 118 | 24.13 | wind | 9.0 | 43200 | < th | dose independent | sin | 14 | NA |
| 124 | 24.13 | precipitation | 0.1 | 4320 | > th | dose dependent | rect. | 9 | 9 |
| 129 | 24.14 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 152 | 24.17 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 17 | 19 |
| 153 | 24.18 | wind | 5.0 | 14400 | > th | dose independent | sin | 4 | NA |
| 155 | 24.18 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 3 |
| 156 | 24.18 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 3 |
| 173 | 24.19 | wind | 3.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 191 | 24.21 | wind | 5.0 | 14400 | < th | dose independent | sin | 4 | NA |
| 202 | 24.22 | wind | 9.0 | 43200 | > th | dose independent | rect. | 14 | 15 |
| 236 | 24.25 | temperature | 20.0 | 1440 | > th | dose dependent | rect. | 18 | 1 |
| 255 | 24.27 | wind | 9.0 | 43200 | < th | dose independent | rect. | 14 | 14 |
| 262 | 24.28 | wind | 5.0 | 43200 | > th | dose independent | sin | 13 | NA |
| 273 | 24.29 | wind | 5.0 | 43200 | < th | dose independent | sin | 13 | NA |
| 274 | 24.29 | wind | 9.0 | 43200 | < th | dose independent | rect. | 17 | 1 |
| 277 | 24.29 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 10 |
| 278 | 24.29 | wind | 7.0 | 43200 | > th | dose independent | rect. | 10 | 12 |
| 300 | 24.31 | wind | 7.0 | 43200 | < th | dose independent | rect. | 10 | 12 |
| 309 | 24.32 | atmosphere | 1000.0 | 43200 | > th | dose independent | rect. | 22 | 1 |
| 311 | 24.32 | atmosphere | 1000.0 | 43200 | < th | dose independent | rect. | 22 | 1 |
| 327 | 24.32 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 13 | 1 |
| 349 | 24.33 | wind | 7.0 | 43200 | > th | dose independent | rect. | 4 | 18 |
| 376 | 24.34 | wind | 5.0 | 43200 | > th | dose independent | rect. | 16 | 15 |
| 381 | 24.34 | wind | 7.0 | 43200 | > th | dose independent | rect. | 12 | 17 |
| 384 | 24.34 | wind | 7.0 | 43200 | < th | dose independent | rect. | 4 | 18 |
| 429 | 24.36 | wind | 5.0 | 43200 | < th | dose independent | rect. | 16 | 16 |
| 452 | 24.37 | wind | 5.0 | 14400 | > th | dose independent | rect. | 24 | 16 |
| 481 | 24.38 | radiation | 30.0 | 1440 | < th | dose independent | rect. | 16 | 16 |
| 483 | 24.38 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 17 |
| 504 | 24.39 | humidity | 70.0 | 1440 | > th | dose independent | rect. | 17 | 1 |
| 515 | 24.39 | wind | 5.0 | 43200 | > th | dose independent | rect. | 15 | 18 |
| 528 | 24.39 | temperature | 30.0 | 1440 | < th | dose dependent | rect. | 18 | 1 |
| 543 | 24.40 | wind | 5.0 | 43200 | < th | dose independent | rect. | 19 | 5 |
| 545 | 24.40 | wind | 5.0 | 14400 | > th | dose independent | rect. | 4 | 11 |
| 569 | 24.40 | wind | 5.0 | 43200 | < th | dose independent | rect. | 15 | 19 |
| 571 | 24.40 | wind | 7.0 | 43200 | < th | dose independent | rect. | 12 | 21 |
| 579 | 24.40 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 3 | 19 |
| 598 | 24.41 | wind | 5.0 | 14400 | < th | dose independent | rect. | 4 | 11 |
| 606 | 24.41 | wind | 5.0 | 14400 | < th | dose independent | rect. | 24 | 16 |
| 693 | 24.42 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 24 | 21 |
| 703 | 24.43 | wind | 5.0 | 14400 | < th | dose independent | rect. | 5 | 9 |
| 738 | 24.43 | wind | 9.0 | 14400 | > th | dose dependent | rect. | 20 | 6 |
| 743 | 24.43 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 7 | 15 |
| 873 | 24.45 | temperature | 25.0 | 10 | > th | dose dependent | rect. | 18 | 14 |
| 895 | 24.46 | wind | 9.0 | 14400 | < th | dose independent | rect. | 20 | 7 |