BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os02g0319100 Os02g0319100|AK068695
(811 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os02g0319100 RNA-binding region RNP-1 (RNA recognition moti... 1620 0.0
Os02g0719800 RNA-binding region RNP-1 (RNA recognition moti... 743 0.0
Os02g0517531 RNA-binding region RNP-1 (RNA recognition moti... 282 6e-76
Os05g0102800 Similar to AML1 228 2e-59
Os01g0907900 Similar to Terminal ear1 128 2e-29
Os09g0531200 RNA recognition motif 2 domain containing protein 81 3e-15
Os02g0157900 72 2e-12
>Os02g0319100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 811
Score = 1620 bits (4196), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 785/811 (96%), Positives = 785/811 (96%)
Query: 1 MEQREDHTKSSEPAFIPSKRTHQMRNIWAWGGPSSTTVNGSSDAVLFSSSLPSVLQFGKL 60
MEQREDHTKSSEPAFIPSKRTHQMRNIWAWGGPSSTTVNGSSDAVLFSSSLPSVLQFGKL
Sbjct: 1 MEQREDHTKSSEPAFIPSKRTHQMRNIWAWGGPSSTTVNGSSDAVLFSSSLPSVLQFGKL 60
Query: 61 PGKEREYNAQPKDDMFPMMKQPGTNARVADPMDDVAQHLIGNLLPDDEELLAGVIEDFDH 120
PGKEREYNAQPKDDMFPMMKQPGTNARVADPMDDVAQHLIGNLLPDDEELLAGVIEDFDH
Sbjct: 61 PGKEREYNAQPKDDMFPMMKQPGTNARVADPMDDVAQHLIGNLLPDDEELLAGVIEDFDH 120
Query: 121 VKLRTQVEESEEYDVFRNSGGMELDIDPLESITFGTAKASLVNGTGSSTNQYSIQNGAGT 180
VKLRTQVEESEEYDVFRNSGGMELDIDPLESITFGTAKASLVNGTGSSTNQYSIQNGAGT
Sbjct: 121 VKLRTQVEESEEYDVFRNSGGMELDIDPLESITFGTAKASLVNGTGSSTNQYSIQNGAGT 180
Query: 181 VTGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEPFGDIRSMYTATKHRGFVMISYYDIR 240
VTGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEPFGDIRSMYTATKHRGFVMISYYDIR
Sbjct: 181 VTGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEPFGDIRSMYTATKHRGFVMISYYDIR 240
Query: 241 HARNAKTALQSKPLRRRKLDIHYSIPKENPSDKDMNQGTLVIFNLEPAVSNEELLQIFGA 300
HARNAKTALQSKPLRRRKLDIHYSIPKENPSDKDMNQGTLVIFNLEPAVSNEELLQIFGA
Sbjct: 241 HARNAKTALQSKPLRRRKLDIHYSIPKENPSDKDMNQGTLVIFNLEPAVSNEELLQIFGA 300
Query: 301 FGEVREIRETPHKRHHRFIEFYDVRAAESALRSLNKSDIAGKRVKLEPSRPGGARRSFIQ 360
FGEVREIRETPHKRHHRFIEFYDVRAAESALRSLNKSDIAGKRVKLEPSRPGGARRSFIQ
Sbjct: 301 FGEVREIRETPHKRHHRFIEFYDVRAAESALRSLNKSDIAGKRVKLEPSRPGGARRSFIQ 360
Query: 361 HFNHEFEQDETKHNSFQIGSPSANSPPSLWSQLGSPTDENKLNALNETAFNGGMSPLGSN 420
HFNHEFEQDETKHNSFQIGSPSANSPPSLWSQLGSPTDENKLNALNETAFNGGMSPLGSN
Sbjct: 361 HFNHEFEQDETKHNSFQIGSPSANSPPSLWSQLGSPTDENKLNALNETAFNGGMSPLGSN 420
Query: 421 HLSGFSSGYPPMKSPVGKSSYWNNRADNIFHGSPTLHNSHSFPEHHGGIIXXXXXXXXXX 480
HLSGFSSGYPPMKSPVGKSSYWNNRADNIFHGSPTLHNSHSFPEHHGGII
Sbjct: 421 HLSGFSSGYPPMKSPVGKSSYWNNRADNIFHGSPTLHNSHSFPEHHGGIISASPLVSSAA 480
Query: 481 XXXXXXXXXXXXXXXXFLWGNNNNLRDHGQPSSIQSQALSNSLFPNNQPQRQSNLYQNLR 540
FLWGNNNNLRDHGQPSSIQSQALSNSLFPNNQPQRQSNLYQNLR
Sbjct: 481 SSASTASGFTALTGTSFLWGNNNNLRDHGQPSSIQSQALSNSLFPNNQPQRQSNLYQNLR 540
Query: 541 GSFGASEHFSQFNVGSAPSVFPFESNFGYFSDSPDTSYMRQGKFGGTGPTRVSGSLMTNF 600
GSFGASEHFSQFNVGSAPSVFPFESNFGYFSDSPDTSYMRQGKFGGTGPTRVSGSLMTNF
Sbjct: 541 GSFGASEHFSQFNVGSAPSVFPFESNFGYFSDSPDTSYMRQGKFGGTGPTRVSGSLMTNF 600
Query: 601 GAYPRINVASMQNGSVGFEGLLDRGRNQTVGNSGCQEDSRVQYQLDLEKIIAGKDTRTTL 660
GAYPRINVASMQNGSVGFEGLLDRGRNQTVGNSGCQEDSRVQYQLDLEKIIAGKDTRTTL
Sbjct: 601 GAYPRINVASMQNGSVGFEGLLDRGRNQTVGNSGCQEDSRVQYQLDLEKIIAGKDTRTTL 660
Query: 661 MIKNIPNKYTSNMLLEVIDETHEGTYDFFYLPIDFKNKCNVGYAFINMASPGYIVSFFKA 720
MIKNIPNKYTSNMLLEVIDETHEGTYDFFYLPIDFKNKCNVGYAFINMASPGYIVSFFKA
Sbjct: 661 MIKNIPNKYTSNMLLEVIDETHEGTYDFFYLPIDFKNKCNVGYAFINMASPGYIVSFFKA 720
Query: 721 FAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSSLMNEDKRCRPMLFDPKHTENNNQI 780
FAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSSLMNEDKRCRPMLFDPKHTENNNQI
Sbjct: 721 FAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSSLMNEDKRCRPMLFDPKHTENNNQI 780
Query: 781 LLNGIFISMAQQDATQERHDLPENPREDNFS 811
LLNGIFISMAQQDATQERHDLPENPREDNFS
Sbjct: 781 LLNGIFISMAQQDATQERHDLPENPREDNFS 811
>Os02g0719800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 848
Score = 743 bits (1917), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/830 (50%), Positives = 515/830 (62%), Gaps = 82/830 (9%)
Query: 33 PSSTTVNGSSDAVLFSSSLPSVLQFGKLPGKEREYNAQPKDDMFPMMKQPGTNARVADPM 92
P NG ++A LFS+SLP VL K+ + DD +K+ + D
Sbjct: 37 PPMNARNGLANASLFSTSLP-VLPHEKINFLDSARGTPLMDDASAKLKELDDDPEGKDYK 95
Query: 93 DDVAQHLIGNLLPDDEELLAGVIEDFDHVKLRTQVEESEEYDVFRNSGGMELDIDPLESI 152
D I +LLP++++L AG+ + + +EE EE+DVF + GGMELD DP+ESI
Sbjct: 96 FDFDLRQIDDLLPNEDDLFAGITNEIEPAGQTNSMEELEEFDVFGSGGGMELDTDPVESI 155
Query: 153 TFGTAKASLVNGT-GSSTNQYSIQNGAGTVTGEHPYGEHPSRTLFVRNINSNVEDSELRS 211
T G S+ +G G+ N + N A TV GEHPYGEHPSRTLFVRNINSNV+D+ELRS
Sbjct: 156 TAGLGNTSIADGLRGNGVNHFGPSNSASTVAGEHPYGEHPSRTLFVRNINSNVDDTELRS 215
Query: 212 LFEPFGDIRSMYTATKHRGFVMISYYDIRHARNAKTALQSKPLRRRKLDIHYSIPKENPS 271
LFE +GDIR++YTATKHRGFVMISY+DIR AR A LQ+KPLRRRKLDIH+SIPKENPS
Sbjct: 216 LFEQYGDIRTLYTATKHRGFVMISYFDIRAARGAMRGLQNKPLRRRKLDIHFSIPKENPS 275
Query: 272 DKDMNQGTLVIFNLEPAVSNEELLQIFGAFGEVREIRETPHKRHHRFIEFYDVRAAESAL 331
DKD+NQGTLVIFNL+P+VSNEE+ QIFG +GEV+EIRETP+K+HH+FIEFYDVRAAE+AL
Sbjct: 276 DKDLNQGTLVIFNLDPSVSNEEVRQIFGTYGEVKEIRETPNKKHHKFIEFYDVRAAEAAL 335
Query: 332 RSLNKSDIAGKRVKLEPSRPGGARRSFIQHFNHEFEQDETKHNSF-QIGSPSANSPPSLW 390
RSLNKS+IAGKR+KLEPSRPGG RR+ +Q H+ +QDE + +GSP A+SPP W
Sbjct: 336 RSLNKSEIAGKRIKLEPSRPGGTRRNLMQQLGHDIDQDEPRSYRIPHVGSPIASSPPGAW 395
Query: 391 SQLGSPTDENKLNALNETAFNGGMSPLGSNHLSGFSSGYPP-------MKSPVGKSSYWN 443
+Q SPTD N L A N + GMSP+ G PP +P+GK S W
Sbjct: 396 AQYSSPTDNNLLQAFNASPTGNGMSPI----------GMPPSLISNAVKIAPIGKDSNW- 444
Query: 444 NRADNIF------HGSPTLHNSHSFPEHHGGIIXXXXXXXXXXXXXXXXXXXXXXXXXXF 497
++ D +F HG+ H SHS+ +H F
Sbjct: 445 SKYDKVFSNNNQPHGAAFQH-SHSYQDH---------------KSEHMSSSPGTLTGPEF 488
Query: 498 LWGNNNNLRDHGQPSSIQSQALSNSLFPNNQPQRQSNLYQNLRGS-FGASEHFSQFNVGS 556
LWG+ +H Q + A+ +++ N + Q Q LY + S FG+ + +VGS
Sbjct: 489 LWGSPKPYSEHAQSPIWRPPAIGHAIPSNTRSQGQGLLYGGRQASLFGSQDQLHHHHVGS 548
Query: 557 APSVFPFESNFGYFSDSPDTSYMRQ---GKFGGTGPTRVSGSLMTNFGAYPRINVASMQN 613
APS PFES+FG+ +SP+TSYM Q G G G R LM N A +N S +
Sbjct: 549 APSGAPFESHFGFLPESPETSYMNQVRFGNIGNIGSGRNGTGLMLNMAARASVNPVSALS 608
Query: 614 --------------------------------GSVGFEGLLDRGRNQTVGNSGCQEDSRV 641
GS G + ++RGRN+ V +S Q DS+
Sbjct: 609 GNMSDNNSSSFRPILSPRLGQSFYGNPTYQGPGSFGLDNSIERGRNRRVDSSVFQADSKK 668
Query: 642 QYQLDLEKIIAGKDTRTTLMIKNIPNKYTSNMLLEVIDETHEGTYDFFYLPIDFKNKCNV 701
QYQLDLEKI G DTRTTLMIKNIPNKYTS MLL IDE H+GTYDFFYLPIDFKNKCNV
Sbjct: 669 QYQLDLEKIRKGDDTRTTLMIKNIPNKYTSKMLLAAIDEFHKGTYDFFYLPIDFKNKCNV 728
Query: 702 GYAFINMASPGYIVSFFKAFAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSSLMNED 761
GYAFINM SP +IVSF++AF G+KWEKFNSEKV SLAYARIQG+ AL++HFQNSSLMNED
Sbjct: 729 GYAFINMISPVHIVSFYQAFNGKKWEKFNSEKVASLAYARIQGRTALISHFQNSSLMNED 788
Query: 762 KRCRPMLFDPKHTENNNQ--ILLNGIFISMAQQDATQERHDLPENPREDN 809
KRCRP+LF + NQ +NGI I M +D D P EDN
Sbjct: 789 KRCRPILFHSNGPDAGNQEPFPINGICIHMPLEDGAIATGD-PFGNEEDN 837
>Os02g0517531 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1001
Score = 282 bits (722), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 186/402 (46%), Positives = 248/402 (61%), Gaps = 41/402 (10%)
Query: 93 DDVAQHLIGNLLPDDEELLAGVIEDFDHVKLRTQVEESEEYDVFRNSGGMELDIDPLESI 152
+++ +IGNLLPDD++LL+GV+++ + + + D+F GGMEL+ D
Sbjct: 187 EEIEAQIIGNLLPDDDDLLSGVVDEVGY-PTNANNRDDADDDIFYTGGGMELETD----- 240
Query: 153 TFGTAKASLVNGTGSSTNQYSIQNGAGTVTGEHPYGEHPSRTLFVRNINSNVEDSELRSL 212
L GS+ + + NG + GEH Y E PSRTLFVRNINSNVEDSEL+ L
Sbjct: 241 ----ENKKLQEFNGSANDGIGLLNG--VLNGEHLYREQPSRTLFVRNINSNVEDSELKLL 294
Query: 213 FEPFGDIRSMYTATKHRGFVMISYYDIRHARNAKTALQSKPLRRRKLDIHYSIPKENPSD 272
FE FGDIR++YTA KHRGFVMISYYDIR A NAK LQ+K LRRRKLDIHYSIPK+NPS+
Sbjct: 295 FEHFGDIRALYTACKHRGFVMISYYDIRSALNAKMELQNKALRRRKLDIHYSIPKDNPSE 354
Query: 273 KDMNQGTLVIFNLEPAVSNEELLQIFGAFGEVREIRETPHKRHHRFIEFYDVRAAESALR 332
KD+NQGT+V+FN++ +++N++L +IFG +GE++EIR+TP K HH+ IEFYDVRAAE+ALR
Sbjct: 355 KDINQGTIVLFNVDLSLTNDDLHKIFGDYGEIKEIRDTPQKGHHKIIEFYDVRAAEAALR 414
Query: 333 SLNKSDIAGKRVKLEPSRPGGARRSFIQHFNHEFEQDETKHNSFQIGSPSANSPP----- 387
+LN++DIAGK++KLE SR G ARR QH + E Q+E ++GSPS +SPP
Sbjct: 415 ALNRNDIAGKKIKLETSRLGAARR-LSQHMSSELCQEE--FGVCKLGSPSTSSPPIASFG 471
Query: 388 -SLWSQLGSPTDENKLNALNETAFNGGMSPLGSNHLSGFSSGYP-PMKSPVGKSS----- 440
+ + + S EN + +S G SS P + +P+G SS
Sbjct: 472 STNLATITSTGHENGSIQGMHSGLQTSISQFRETSFPGLSSTIPQSLSTPIGISSGATHS 531
Query: 441 -------------YWNNRADNIFHGSPTLHNSHSFPEHHGGI 469
N + F G LH HS PE H G+
Sbjct: 532 NQAALGEISQSLGRMNGHMNYSFQGMSALH-PHSLPEVHNGV 572
Score = 233 bits (595), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 123/250 (49%), Positives = 161/250 (64%), Gaps = 33/250 (13%)
Query: 551 QFNVGSAPSVFP--FESNFGY---FSDSPDTSYMRQGKFGGTGPTRVSGSLMTNFGAYPR 605
+VGSAP++ P ++ GY +++P+ G G G ++ + N YP+
Sbjct: 694 HLHVGSAPAINPSLWDRRHGYAGELTEAPNFHPGSVGSMGFPGSPQLHSMELNNI--YPQ 751
Query: 606 INVASM---------------QNGSV-----------GFEGLLDRGRNQTVGNSGCQEDS 639
M Q GS+ F+ +R R++ ++G Q D+
Sbjct: 752 TGGNCMDPTVSPAQIGGPSPQQRGSMFHGRNPMVPLPSFDSPGERMRSRRNDSNGNQSDN 811
Query: 640 RVQYQLDLEKIIAGKDTRTTLMIKNIPNKYTSNMLLEVIDETHEGTYDFFYLPIDFKNKC 699
+ QY+LD+++I+ G D+RTTLMIKNIPNKYTS MLL IDE H+GTYDF YLPIDFKNKC
Sbjct: 812 KKQYELDVDRIVRGDDSRTTLMIKNIPNKYTSKMLLAAIDENHKGTYDFIYLPIDFKNKC 871
Query: 700 NVGYAFINMASPGYIVSFFKAFAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSSLMN 759
NVGYAFINM +P +I+ F++ F G+KWEKFNSEKV SLAYARIQGK+AL+ HFQNSSLMN
Sbjct: 872 NVGYAFINMTNPQHIIPFYQTFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSSLMN 931
Query: 760 EDKRCRPMLF 769
EDKRCRP+LF
Sbjct: 932 EDKRCRPILF 941
>Os05g0102800 Similar to AML1
Length = 955
Score = 228 bits (580), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 153/236 (64%), Gaps = 17/236 (7%)
Query: 541 GSFGASEHFSQFNVGS-----APSVFPFESNFGYFSDSPDTSYMRQGKFGGTGPTRVSGS 595
GSFG F ++GS +P ++P E F+ S R+ F G S
Sbjct: 666 GSFGNVHSFHPGSLGSIGLHGSPQLYPSE--LSAFASS--RGNFREALFSPVGGGFQSLQ 721
Query: 596 LMTNF--GAYPRINVASMQNGSVGFEGLLDRGRNQTVGNSGCQEDSRVQYQLDLEKIIAG 653
M N G P I+V S ++ DR R++ + Q +++ Q++LD+++I G
Sbjct: 722 QMCNAINGRNPMIHV------STSYDATNDRMRSRRHDGNPAQSENKRQFELDIDRIAKG 775
Query: 654 KDTRTTLMIKNIPNKYTSNMLLEVIDETHEGTYDFFYLPIDFKNKCNVGYAFINMASPGY 713
+D+RTTLMIKNIPNKY +LL VIDE H GTYDF YLPIDFKNKCNVGYAFINM P +
Sbjct: 776 EDSRTTLMIKNIPNKYNCKLLLAVIDENHRGTYDFIYLPIDFKNKCNVGYAFINMTDPQH 835
Query: 714 IVSFFKAFAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSSLMNEDKRCRPMLF 769
I+ F+K F G+KWEKFNSEKV SLAYARIQG++AL+ HFQNSSLMNEDK CRPMLF
Sbjct: 836 IIPFYKTFNGKKWEKFNSEKVASLAYARIQGRSALIAHFQNSSLMNEDKWCRPMLF 891
Score = 211 bits (538), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 114/292 (39%), Positives = 170/292 (58%), Gaps = 29/292 (9%)
Query: 111 LAGVIEDFDHVKLRTQVEESEEYDVFRNSGGMELDIDPLESITFGTAKASLVNGTGSSTN 170
++G+ + F+ + T ++++E D+F GGMEL+ S
Sbjct: 206 ISGIADGFEFTGMSTNQDDADE-DIFCTGGGMELE-------------------NNDSVK 245
Query: 171 QYSIQNGA--GTVTGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEPFGDIRSMYTATKH 228
+Q+G+ ++ H + PSRTL VRNI +N+EDS+L LF+ +GDIR +YT+ KH
Sbjct: 246 GDKVQDGSFKSQISSGHSINKQPSRTLVVRNITANIEDSDLTVLFQQYGDIRMLYTSFKH 305
Query: 229 RGFVMISYYDIRHARNAKTALQSKPLRRRKLDIHYSIPKENPSDKDMNQGTLVIFNLEPA 288
GFV +SYYDIR A+NA AL SKPL KLD+ +S PKEN KD+++G LV+ N++ +
Sbjct: 306 HGFVTVSYYDIRAAQNAMRALHSKPLGLMKLDVQFSFPKENVPGKDIDKGMLVVSNIDSS 365
Query: 289 VSNEELLQIFGAFGEVREIRETPHKRHHRFIEFYDVRAAESALRSLNKSDIAGKRVKLEP 348
+SN++LLQ+ +G+V+EI +P +F+EFYDVRAAE AL LNK I+G + K+E
Sbjct: 366 ISNDDLLQMLSVYGDVKEISSSPISCTKKFVEFYDVRAAEEALHDLNKGGISGPKFKVEL 425
Query: 349 SRPGGARRSFIQHFNHEFEQDETKHNSFQIGSPSANSPPSLWSQLGSPTDEN 400
S+ G A Q + E++QD H NS P +LG+ +N
Sbjct: 426 SQHGEAGSCLRQQHSREWKQDSLPHQ-------PKNSSPGTIGKLGTKCQDN 470
>Os01g0907900 Similar to Terminal ear1
Length = 683
Score = 128 bits (322), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 17/135 (12%)
Query: 654 KDTRTTLMIKNIPNKYTSNMLLEVID----------------ETHE-GTYDFFYLPIDFK 696
KDTRTT+MI+NIPNKY+ +LL ++D E +YDF YLPIDF
Sbjct: 454 KDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
Query: 697 NKCNVGYAFINMASPGYIVSFFKAFAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSS 756
NKCNVGY F+N+ SP V +KAF + WE FNS K+ + YAR+QG AL HF+NS
Sbjct: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSK 573
Query: 757 LMNEDKRCRPMLFDP 771
+ P++F P
Sbjct: 574 FPCDSDEYLPVVFSP 588
Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 107/233 (45%), Gaps = 50/233 (21%)
Query: 172 YSIQNGAGTVTGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEPFGDIRSM-YTATKHRG 230
Y + A V G SR + + + + + E+ PFG +R++ +A G
Sbjct: 83 YCVPAAATVVDGPA------SRAVVLSLVPPHAPEDEIARAMAPFGAVRAVDASAVASEG 136
Query: 231 FVMISYYDIRHARNAKTALQSKPLRRR--------------------------------- 257
+ ++D+R A +A T ++ + +R++
Sbjct: 137 VATVYFFDLRSAEHAVTGVREQHIRQQCRLGQLYAAAAAAAASSPTWPPPAWDWPHDDNR 196
Query: 258 ------KLDIHYSIPKENPSDKDMNQGTLVIFNLEPAVSNEELLQIFGAFGEVREIRETP 311
+ H++ P D ++G+LV+ N PA+S EL +IF A+G+V+++RE+
Sbjct: 197 GLVLGQAVWAHFAAASTVPDD-GASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESA 255
Query: 312 HKRHHRFIEFYDVRAAESALRSLNKSDIAGKRVKLE---PSRPGGARRSFIQH 361
+ ++F+EF+D R A+ AL LN ++ G+R+ +E PS PG RR + H
Sbjct: 256 LRPSNKFVEFFDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSH 308
>Os09g0531200 RNA recognition motif 2 domain containing protein
Length = 323
Score = 81.3 bits (199), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/135 (34%), Positives = 62/135 (45%), Gaps = 19/135 (14%)
Query: 656 TRTTLMIKNIPNKYTSNMLLEVIDE-------------------THEGTYDFFYLPIDFK 696
T T+LMI+NIPNK+ L+ ++D+ + YDFFY+PIDFK
Sbjct: 168 TTTSLMIRNIPNKFLKARLMAILDQHCADENGKCHRRGGGGGRSVVKSEYDFFYVPIDFK 227
Query: 697 NKCNVGYAFINMASPGYIVSFFKAFAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSS 756
N GYAF+NM + +W+ S KV + A IQG A V HF S
Sbjct: 228 TGFNKGYAFVNMTTATAARRLRAFLQDHRWDAAMSGKVCDVVPAAIQGLDAFVAHFSASC 287
Query: 757 LMNEDKRCRPMLFDP 771
K P+ F+P
Sbjct: 288 FPCRTKEFLPVWFEP 302
>Os02g0157900
Length = 389
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 40/128 (31%), Positives = 65/128 (50%), Gaps = 20/128 (15%)
Query: 654 KDTRTTLMIKNIPNKYTSNMLLEVIDE-------------THEGTYDFFYLPIDF----- 695
K TT+M++NIPNK T + ++ ++D+ YD Y+ +DF
Sbjct: 212 KPAHTTVMVRNIPNKLTRSDMVRLLDDHCARENRRRGRGGEPRAEYDLVYVRMDFGMCNK 271
Query: 696 KNKCNVGYAFINMASPGYIVSFFKAFAGRKWEK--FNSEKVVSLAYARIQGKAALVNHFQ 753
+ N+GYAF+N + +A G +W++ F+S K++ + ARIQGK ALV HF
Sbjct: 272 ERSSNMGYAFVNFTTAEAARGLQRALHGCRWKRSAFDSGKIIDIRAARIQGKDALVRHFG 331
Query: 754 NSSLMNED 761
++ D
Sbjct: 332 RTTYYECD 339
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.315 0.132 0.390
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 28,758,974
Number of extensions: 1275822
Number of successful extensions: 3322
Number of sequences better than 1.0e-10: 8
Number of HSP's gapped: 3324
Number of HSP's successfully gapped: 12
Length of query: 811
Length of database: 17,035,801
Length adjustment: 109
Effective length of query: 702
Effective length of database: 11,344,475
Effective search space: 7963821450
Effective search space used: 7963821450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 160 (66.2 bits)