FiT-DB / Search/ Help/ Sample detail

Notice!
This gene did NOT pass the analysis criteria (log2(expression) > 5 in more than 80% of samples & normality of residuals was not rejected).
The modeling results may be unreliable.

Os01g0907900

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : Similar to Terminal ear1.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 3.28 (0.0214) R2 : 0.00132
β1 : -- (--) R2dD : -- R2D : --
β2 : -- (--) R2dC : -- R2C : --
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.0349 (0.045) R2dN8 : 0.0017 R2N8 : 0.00132
σ : 0.402
deviance : 74.25
__
_____
C
peak time of C : --
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = radiation, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
69.42 0.391 3.26 0.214 0.368 -0.265 -1.34 1.42 0.081 10.8 0.18 97 -- --
71.54 0.397 3.27 0.118 0.297 -0.156 0.12 -- 0.0448 9.27 0.18 97 -- --
70.81 0.395 3.27 0.129 0.297 -0.155 -- 0.345 0.0466 9.15 0.18 97 -- --
71.58 0.397 3.27 0.122 0.286 -0.144 -- -- 0.0447 9.06 0.18 97 -- --
72.98 0.398 3.28 0.111 -- -0.022 -- 0.358 0.0469 -- 0.3 182 -- --
72.04 0.398 3.28 0.112 0.185 -- -0.203 -- 0.043 6.35 -- -- -- --
72.12 0.398 3.28 0.111 0.185 -- -- -- 0.044 6.78 -- -- -- --
73.15 0.398 3.29 0.0774 -- -0.087 -- -- -0.00703 -- 4.604 654 -- --
71.97 0.397 3.28 -- 0.278 -0.135 -- -- 0.0312 8.93 0.18 97 -- --
73.9 0.402 3.28 0.115 -- -- -- -- 0.0476 -- -- -- -- --
72.44 0.398 3.28 -- 0.186 -- -- -- 0.0317 6.75 -- -- -- --
72.13 0.396 3.29 -- -- -0.245 -- -- 0.0306 -- 0.07998 884 -- --
74.25 0.402 3.28 -- -- -- -- -- 0.0349 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 64.94 atmosphere 1005.0 30 > th dose dependent rect. 2 3
3 65.04 temperature 25.0 90 > th dose dependent rect. 1 4
4 65.05 temperature 25.0 270 > th dose independent rect. 1 2
8 65.14 temperature 25.0 270 > th dose dependent rect. 2 1
12 65.33 temperature 25.0 90 > th dose independent rect. 1 4
39 67.02 atmosphere 1000.0 30 > th dose independent rect. 3 23
44 67.17 radiation 1.0 43200 < th dose dependent rect. 3 1
57 67.43 atmosphere 1005.0 30 > th dose independent rect. 2 3
61 67.52 atmosphere 1005.0 30 > th dose independent rect. 2 1
65 67.53 temperature 25.0 720 > th dose dependent rect. 5 3
76 67.60 wind 3.0 30 < th dose independent rect. 2 1
80 67.61 wind 5.0 30 < th dose dependent rect. 2 1
90 67.65 temperature 10.0 30 > th dose independent rect. 2 1
92 67.65 temperature 30.0 30 < th dose independent rect. 2 1
93 67.65 humidity 50.0 30 > th dose independent rect. 2 1
96 67.65 humidity 90.0 30 > th dose independent rect. 2 1
98 67.65 atmosphere 1010.0 30 < th dose independent rect. 2 1
100 67.65 radiation 1.0 30 < th dose independent rect. 2 1
105 67.65 precipitation 0.1 30 < th dose independent rect. 2 1
106 67.65 temperature 10.0 30 > th dose independent rect. 3 23
107 67.65 humidity 50.0 30 > th dose dependent rect. 2 1
110 67.65 radiation 1.0 30 < th dose dependent rect. 2 1
116 67.65 precipitation 0.1 30 < th dose dependent rect. 2 1
132 67.71 wind 9.0 1440 < th dose independent rect. 3 1
133 67.71 temperature 10.0 1440 > th dose independent rect. 3 1
136 67.71 temperature 30.0 1440 < th dose independent rect. 3 1
140 67.71 humidity 50.0 1440 > th dose independent rect. 3 1
149 67.71 atmosphere 995.0 1440 > th dose independent rect. 3 1
150 67.71 radiation 1.0 1440 < th dose independent rect. 3 1
170 67.71 temperature 10.0 1440 > th dose independent rect. 4 23
185 67.85 humidity 90.0 10 < th dose independent rect. 3 2
187 67.85 atmosphere 1015.0 30 < th dose dependent rect. 2 1
188 67.86 temperature 30.0 30 < th dose dependent rect. 2 1
191 67.89 wind 1.0 30 > th dose independent rect. 2 1
199 67.97 wind 5.0 30 < th dose dependent rect. 2 3
206 68.03 wind 3.0 30 < th dose independent rect. 2 3
214 68.08 atmosphere 995.0 720 > th dose independent rect. 23 16
218 68.10 humidity 80.0 14400 < th dose dependent rect. 2 7
221 68.13 precipitation 0.1 720 < th dose independent rect. 15 8
224 68.13 precipitation 0.1 720 < th dose dependent rect. 15 8
230 68.15 temperature 25.0 10 > th dose dependent rect. 16 19
246 68.22 precipitation 0.1 30 < th dose independent rect. 3 23
247 68.22 precipitation 0.1 30 < th dose dependent rect. 3 23
250 68.23 atmosphere 1000.0 720 > th dose independent rect. 3 8
253 68.23 temperature 25.0 10 > th dose dependent rect. 24 11
256 68.25 wind 9.0 30 < th dose independent rect. 3 23
264 68.27 humidity 90.0 10 < th dose dependent rect. 4 1
283 68.28 humidity 90.0 90 < th dose independent rect. 2 3
297 68.30 atmosphere 1000.0 30 > th dose independent rect. 5 21
302 68.31 temperature 25.0 10 > th dose dependent rect. 6 5
306 68.33 wind 9.0 1440 < th dose independent rect. 3 3
307 68.33 temperature 10.0 1440 > th dose independent rect. 3 3
310 68.33 temperature 25.0 720 > th dose independent rect. 5 3
311 68.33 temperature 30.0 1440 < th dose independent rect. 3 3
315 68.33 humidity 50.0 1440 > th dose independent rect. 3 3
324 68.33 atmosphere 995.0 1440 > th dose independent rect. 3 3
325 68.33 radiation 20.0 1440 < th dose independent rect. 3 3
334 68.33 temperature 10.0 1440 > th dose independent rect. 6 21
337 68.33 atmosphere 1005.0 10 > th dose dependent rect. 4 1
340 68.34 temperature 25.0 30 > th dose dependent rect. 14 21
347 68.37 radiation 1.0 30 < th dose dependent rect. 2 12
350 68.39 radiation 1.0 30 < th dose independent rect. 2 12
362 68.42 temperature 30.0 10 < th dose dependent rect. 4 1
374 68.47 temperature 10.0 720 > th dose independent rect. 15 8
375 68.47 temperature 10.0 720 > th dose independent rect. 23 16
379 68.50 temperature 25.0 720 > th dose independent rect. 6 1
389 68.53 temperature 10.0 720 > th dose independent rect. 3 8
391 68.53 temperature 10.0 720 > th dose independent rect. 11 16
396 68.55 wind 9.0 30 < th dose independent rect. 5 21
397 68.56 wind 5.0 10 < th dose independent rect. 4 1
399 68.56 wind 9.0 720 < th dose independent rect. 3 8
403 68.56 radiation 1.0 30 < th dose dependent rect. 2 10
405 68.57 precipitation 0.1 720 < th dose independent rect. 11 16
406 68.57 precipitation 0.1 720 < th dose dependent rect. 11 16
408 68.58 temperature 25.0 720 < th dose independent rect. 23 2
410 68.58 humidity 80.0 30 > th dose independent rect. 2 3
411 68.58 radiation 1.0 30 < th dose independent rect. 2 10
413 68.58 radiation 1.0 30 < th dose dependent rect. 2 6
418 68.59 radiation 1.0 30 < th dose independent rect. 2 6
425 68.60 precipitation 0.1 30 < th dose independent rect. 2 3
426 68.60 humidity 50.0 720 > th dose independent rect. 3 8
427 68.60 precipitation 0.1 30 < th dose dependent rect. 2 3
431 68.61 temperature 10.0 30 > th dose independent rect. 2 3
433 68.61 temperature 30.0 30 < th dose independent rect. 2 3
434 68.61 humidity 50.0 30 > th dose independent rect. 2 3
437 68.61 atmosphere 995.0 30 > th dose independent rect. 2 3
438 68.61 atmosphere 1010.0 30 < th dose independent rect. 2 3
440 68.61 radiation 1.0 30 < th dose independent rect. 2 3
447 68.61 temperature 10.0 30 > th dose independent rect. 5 21
448 68.61 radiation 10.0 30 < th dose dependent rect. 2 3
454 68.62 precipitation 0.1 30 < th dose independent rect. 5 21
456 68.62 precipitation 0.1 30 < th dose dependent rect. 5 21
463 68.63 wind 9.0 10 < th dose dependent rect. 4 1
464 68.63 radiation 1.0 10 < th dose dependent rect. 4 1
467 68.64 temperature 10.0 10 > th dose independent rect. 4 1
469 68.64 temperature 30.0 10 < th dose independent rect. 4 1
470 68.64 humidity 50.0 10 > th dose independent rect. 4 1
474 68.64 humidity 90.0 270 < th dose independent rect. 1 1
475 68.64 atmosphere 995.0 10 > th dose independent rect. 4 1
476 68.64 atmosphere 1010.0 10 < th dose independent rect. 4 1
478 68.64 radiation 1.0 10 < th dose independent rect. 4 1
484 68.64 temperature 10.0 10 > th dose independent rect. 5 23
485 68.64 atmosphere 1000.0 10 > th dose independent rect. 11 23
493 68.65 atmosphere 1005.0 10 > th dose independent rect. 4 1
508 68.68 temperature 25.0 720 < th dose independent rect. 21 5
510 68.68 temperature 20.0 90 > th dose dependent rect. 4 1
518 68.69 atmosphere 1000.0 90 > th dose independent rect. 11 18
537 68.70 precipitation 0.1 10 < th dose independent rect. 4 1
547 68.70 precipitation 0.1 10 < th dose dependent rect. 4 1
560 68.72 temperature 25.0 10 > th dose dependent rect. 21 14
564 68.73 humidity 50.0 10 > th dose dependent rect. 4 1
591 68.75 atmosphere 1015.0 30 < th dose dependent rect. 4 1
610 68.78 temperature 10.0 30 > th dose dependent rect. 4 1
617 68.80 wind 5.0 14400 < th dose dependent rect. 11 1
620 68.81 humidity 70.0 14400 > th dose independent rect. 8 1
637 68.84 wind 1.0 30 > th dose independent rect. 4 1
671 68.90 wind 1.0 14400 < th dose dependent rect. 6 1
680 68.91 wind 9.0 720 < th dose dependent rect. 2 1
689 68.93 wind 5.0 14400 < th dose independent rect. 11 1
693 68.93 temperature 10.0 30 > th dose dependent rect. 5 21
694 68.94 wind 7.0 1440 < th dose independent rect. 5 1
696 68.94 temperature 10.0 1440 > th dose independent rect. 5 1
699 68.94 temperature 30.0 1440 < th dose independent rect. 5 1
703 68.94 humidity 50.0 1440 > th dose independent rect. 5 1
712 68.94 atmosphere 995.0 1440 > th dose independent rect. 5 1
713 68.94 atmosphere 1015.0 1440 < th dose independent rect. 5 1
714 68.94 radiation 20.0 1440 < th dose independent rect. 5 1
725 68.94 wind 9.0 30 < th dose independent rect. 5 23
726 68.94 temperature 10.0 1440 > th dose independent rect. 6 23
732 68.94 temperature 15.0 90 > th dose dependent rect. 5 6
767 68.97 humidity 70.0 14400 < th dose independent rect. 8 1
769 68.97 atmosphere 1000.0 10 > th dose independent rect. 2 12
785 68.99 humidity 50.0 30 > th dose independent rect. 5 21
790 69.00 wind 7.0 720 < th dose independent rect. 17 12
795 69.01 temperature 25.0 30 > th dose independent rect. 6 5
796 69.01 atmosphere 1015.0 720 < th dose independent rect. 3 8
807 69.03 humidity 70.0 14400 > th dose independent rect. 4 5
808 69.03 humidity 70.0 14400 > th dose independent rect. 24 9
810 69.03 humidity 70.0 14400 > th dose independent rect. 22 11
813 69.03 radiation 1.0 30 < th dose dependent rect. 19 23
815 69.04 humidity 70.0 14400 > th dose independent rect. 6 3
824 69.04 precipitation 0.1 30 < th dose independent rect. 5 23
825 69.04 humidity 50.0 30 > th dose dependent rect. 2 3
828 69.04 precipitation 0.1 30 < th dose dependent rect. 5 23
847 69.08 radiation 1.0 10 > th dose dependent rect. 7 3
849 69.08 radiation 10.0 10 > th dose dependent rect. 16 18
853 69.09 atmosphere 995.0 720 > th dose independent rect. 15 8
862 69.10 humidity 60.0 10 > th dose independent rect. 14 12
863 69.10 atmosphere 995.0 720 > th dose independent rect. 11 16
872 69.12 wind 5.0 14400 < th dose independent rect. 10 5
874 69.12 radiation 40.0 30 < th dose independent rect. 14 12
879 69.13 atmosphere 1000.0 10 > th dose independent rect. 14 12
880 69.13 wind 1.0 14400 > th dose dependent rect. 11 1
909 69.16 wind 3.0 14400 > th dose independent rect. 10 2
914 69.17 temperature 25.0 1440 < th dose independent rect. 1 1
917 69.17 atmosphere 1000.0 270 > th dose independent rect. 9 20
931 69.19 temperature 30.0 90 < th dose independent rect. 11 18
946 69.21 precipitation 0.1 720 < th dose independent rect. 3 8
947 69.21 precipitation 0.1 720 < th dose independent rect. 23 16
951 69.21 precipitation 0.1 720 < th dose dependent rect. 3 8
952 69.21 precipitation 0.1 720 < th dose dependent rect. 23 16
955 69.22 wind 5.0 14400 > th dose independent rect. 10 5
958 69.22 wind 5.0 14400 < th dose independent rect. 9 8
959 69.22 atmosphere 1000.0 10 > th dose independent rect. 16 10
990 69.25 temperature 30.0 30 < th dose independent rect. 5 21
991 69.25 humidity 50.0 30 > th dose independent rect. 3 23