BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0907900 Os01g0907900|Os01g0907900
(683 letters)
Database: tair10
27,416 sequences; 11,106,569 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G26120.1 | chr3:9546398-9549186 FORWARD LENGTH=616 247 2e-65
AT1G67770.1 | chr1:25408043-25410153 FORWARD LENGTH=528 203 3e-52
AT5G61960.1 | chr5:24879001-24883483 REVERSE LENGTH=916 139 5e-33
AT5G07290.1 | chr5:2294248-2298491 FORWARD LENGTH=908 135 5e-32
AT1G37140.1 | chr1:14170351-14172040 REVERSE LENGTH=234 130 2e-30
AT1G29400.1 | chr1:10290393-10293696 REVERSE LENGTH=801 129 4e-30
AT4G18120.1 | chr4:10038878-10041950 FORWARD LENGTH=731 125 6e-29
AT5G07930.3 | chr5:2530865-2532333 FORWARD LENGTH=295 111 1e-24
AT2G42890.1 | chr2:17850077-17854205 FORWARD LENGTH=844 94 2e-19
AT2G37340.1 | chr2:15670372-15672331 REVERSE LENGTH=291 50 4e-06
>AT3G26120.1 | chr3:9546398-9549186 FORWARD LENGTH=616
Length = 615
Score = 247 bits (630), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 116/159 (72%), Positives = 132/159 (83%), Gaps = 3/159 (1%)
Query: 446 ETHEPASCKDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQI---EASCEDEAQPFSS 502
ET E SC+D RTT+MI+NIPNKYSQKLLL+MLD HCI N+ I E QP+SS
Sbjct: 396 ETMEDPSCRDPRTTLMIKNIPNKYSQKLLLDMLDKHCIHINEAITEEHNKHESHHQPYSS 455
Query: 503 YDFLYLPIDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGL 562
YDF+YLP+DFNNKCNVGYGFVN+TSPEAA R YKAFH Q WEVFNS KICQ+TYARVQGL
Sbjct: 456 YDFVYLPMDFNNKCNVGYGFVNMTSPEAAWRFYKAFHGQRWEVFNSHKICQITYARVQGL 515
Query: 563 DALKEHFKNSKFPCDSDEYLPVVFSPPRDGKLLTEPVPL 601
+ LKEHFK+SKFPC+++ YLPVVFSPPRDGK LTEPV +
Sbjct: 516 EDLKEHFKSSKFPCEAELYLPVVFSPPRDGKQLTEPVSI 554
Score = 127 bits (319), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 78/222 (35%), Positives = 117/222 (52%), Gaps = 23/222 (10%)
Query: 97 SRAVVLSLVPPHAPEDEIARAMAPFGXXXXXXXXXXXXEGVATVYFFDLRSAEHAVTGVR 156
+R++ L VP E + R + +G EG+ TV+F+D+R A+ AV V
Sbjct: 105 TRSLSLISVPRDVTESTVRRDLEVYGDVRGVQMERIS-EGIVTVHFYDIRDAKRAVREVC 163
Query: 157 EQHIRQQCRLGQLYXXXXXXXXXXXXXXXXXXXXXHDDNRGLVLGQAVWAHFA--AASTV 214
+H++QQ R G ++ RG V G+ VWA F A S V
Sbjct: 164 GRHMQQQARGGSVWSSPSTSSA-----------------RGFVSGRPVWAQFVVPATSAV 206
Query: 215 PDDGASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALRPSNKFVEFFDTRDADRA 274
P G ++G+LV+ N P +S LR+IFQ YG +K++RE+ + +FVEF+D RDA RA
Sbjct: 207 PG-GCNQGTLVIFNLDPEVSSITLRQIFQVYGPIKELRETPYKKHQRFVEFYDVRDAARA 265
Query: 275 LHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSHQPLAPTPP 316
+NGKE+ G+++V+E++RP G + R S QP P P
Sbjct: 266 FDRMNGKEIGGKQVVIEFSRPG--GIKNRFRSSRQPQLPFQP 305
>AT1G67770.1 | chr1:25408043-25410153 FORWARD LENGTH=528
Length = 527
Score = 203 bits (516), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 98/151 (64%), Positives = 117/151 (77%), Gaps = 4/151 (2%)
Query: 454 KDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
+D RTTVMI+NIPNKY+QKLLL MLD HC NQ + E P SSYDF+YLPIDF+
Sbjct: 333 RDGRTTVMIKNIPNKYTQKLLLKMLDTHCKDCNQSVIK--EGNKTPMSSYDFVYLPIDFS 390
Query: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVF-NSRKICQVTYARVQGLDALKEHFKNS 572
NK NVGYGFVN+TSPEA RLYK+FH Q W F +RKIC+VTYAR+QGL++L+EHFKN
Sbjct: 391 NKSNVGYGFVNMTSPEAVWRLYKSFHNQHWRDFTTTRKICEVTYARIQGLESLREHFKNV 450
Query: 573 KFP-CDSDEYLPVVFSPPRDGKLLTEPVPLV 602
+ + DEY+PVVFSPPRDG+L EPV +V
Sbjct: 451 RLAGVEIDEYMPVVFSPPRDGRLSPEPVAIV 481
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 107/201 (53%), Gaps = 25/201 (12%)
Query: 97 SRAVVLSLVPPHAPEDEIARAMAPFGXXXXXXXXXXXXEGVATVYFFDLRSAEHAVTGVR 156
+RAV+L VP E + R M FG EG+ +F++L +++ A +R
Sbjct: 79 TRAVMLLQVPATVTETSLRRDMELFGEVRGVQMERAH-EGIVIFHFYNLINSQRAFNEIR 137
Query: 157 EQHIRQQCRLGQLYXXXXXXXXXXXXXXXXXXXXXHDDNRGLVLGQAVWAHFA--AASTV 214
+H++QQ + + RGLV G ++WAHF + V
Sbjct: 138 YRHMQQQEQQQHFHFTTA---------------------RGLVSGHSLWAHFVFPQLNAV 176
Query: 215 PDDGASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALRPSNKFVEFFDTRDADRA 274
P+ G ++GSLV++N P +S LR IFQ YG+VK VRE+ + +FVEFFD RDA +A
Sbjct: 177 PE-GNNQGSLVIMNLEPTVSSSTLRHIFQVYGEVKQVRETPCKREQRFVEFFDVRDAAKA 235
Query: 275 LHELNGKELFGRRLVVEYTRP 295
L +NGK + G+ +V++++RP
Sbjct: 236 LRVMNGKVISGKPMVIQFSRP 256
>AT5G61960.1 | chr5:24879001-24883483 REVERSE LENGTH=916
Length = 915
Score = 139 bits (350), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 67/148 (45%), Positives = 87/148 (58%), Gaps = 17/148 (11%)
Query: 454 KDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
+D RTT+MI+NIPNKY+ K+LL+ +D HC +YDFLYLPIDF
Sbjct: 740 EDRRTTLMIKNIPNKYTSKMLLSAIDEHCK-----------------GTYDFLYLPIDFK 782
Query: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSK 573
NKCNVGY F+NL PE V +KAF+ + WE FNS K+ +TYAR+QG AL HF+NS
Sbjct: 783 NKCNVGYAFINLIEPEKIVPFFKAFNGKKWEKFNSEKVATLTYARIQGKTALIAHFQNSS 842
Query: 574 FPCDSDEYLPVVFSPPRDGKLLTEPVPL 601
+ P++F EP P+
Sbjct: 843 LMNEDKRCRPILFHTDGPNAGDQEPFPM 870
>AT5G07290.1 | chr5:2294248-2298491 FORWARD LENGTH=908
Length = 907
Score = 135 bits (341), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 85/148 (57%), Gaps = 17/148 (11%)
Query: 454 KDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
+D+RTT+MI+NIPNKY+ K+LL +D +C +YDFLYLPIDF
Sbjct: 738 EDSRTTLMIKNIPNKYTSKMLLAAIDEYCK-----------------GTYDFLYLPIDFK 780
Query: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSK 573
NKCNVGY F+NL PE V YKAF+ + WE FNS K+ + Y R+QG AL HF+NS
Sbjct: 781 NKCNVGYAFINLIEPENIVPFYKAFNGKKWEKFNSEKVASLAYGRIQGKSALIAHFQNSS 840
Query: 574 FPCDSDEYLPVVFSPPRDGKLLTEPVPL 601
+ P++F EP P+
Sbjct: 841 LMNEDKRCRPILFHTAGPNAGDQEPFPM 868
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 56/98 (57%)
Query: 198 LVLGQAVWAHFAAASTVPDDGASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALR 257
L+ G+ + ++ P + +S G+L V N ++S EL IF +YG++++VR +
Sbjct: 271 LLRGRKLDIRYSIPKENPKENSSEGALWVNNLDSSISNEELHGIFSSYGEIREVRRTMHE 330
Query: 258 PSNKFVEFFDTRDADRALHELNGKELFGRRLVVEYTRP 295
S ++EFFD R A AL LNG E+ GR+L + T P
Sbjct: 331 NSQVYIEFFDVRKAKVALQGLNGLEVAGRQLKLAPTCP 368
>AT1G37140.1 | chr1:14170351-14172040 REVERSE LENGTH=234
Length = 233
Score = 130 bits (327), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 86/137 (62%), Gaps = 13/137 (9%)
Query: 457 RTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNNKC 516
RT+VM++NIPN + LL +LDNHC N++ SSYDFLYLP+DF +
Sbjct: 83 RTSVMVKNIPNCLGRMDLLRILDNHCRKHNEK------------SSYDFLYLPMDFGKRA 130
Query: 517 NVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRK-ICQVTYARVQGLDALKEHFKNSKFP 575
N+GY FVN TS AA R + F W+ RK IC++T A+ QG + L HF+NS+F
Sbjct: 131 NLGYAFVNFTSSLAAERFRREFENFSWDNIGFRKKICEITVAKYQGKEELTRHFRNSRFT 190
Query: 576 CDSDEYLPVVFSPPRDG 592
C +D+YLPVV SPP +G
Sbjct: 191 CHTDDYLPVVLSPPSNG 207
>AT1G29400.1 | chr1:10290393-10293696 REVERSE LENGTH=801
Length = 800
Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 61/138 (44%), Positives = 85/138 (61%), Gaps = 17/138 (12%)
Query: 454 KDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
+D+RTT+MI+NIPNKY+ K+LL +D NQ +Y+FLYLPIDF
Sbjct: 649 EDSRTTLMIKNIPNKYTSKMLLAAIDE----KNQ-------------GTYNFLYLPIDFK 691
Query: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSK 573
NKCNVGY F+N+ +PE + Y+AF+ + WE FNS K+ + YAR+QG AL HF+NS
Sbjct: 692 NKCNVGYAFINMLNPELIIPFYEAFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSS 751
Query: 574 FPCDSDEYLPVVFSPPRD 591
+ P++F P +
Sbjct: 752 LMNEDMRCRPIIFDTPNN 769
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 22/134 (16%)
Query: 207 HFAAASTVPDD-GASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALRPSNKFVEF 265
HF+ P + ++G+LVV N P++S +L IF A+G++K++RE+ + +KFVEF
Sbjct: 237 HFSIPKDNPSEKDMNQGTLVVFNLDPSISNDDLHGIFGAHGEIKEIRETPHKRHHKFVEF 296
Query: 266 FDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSH----------------- 308
+D R A+ AL LN E+ G+R+ VE PS PG RR +
Sbjct: 297 YDVRGAEAALKALNRCEIAGKRIKVE---PSRPGGARRSLMLQLNQDLENDDLHYLPMIG 353
Query: 309 QPLAPTPPRLQAAW 322
P+A +PP +Q W
Sbjct: 354 SPMANSPP-MQGNW 366
>AT4G18120.1 | chr4:10038878-10041950 FORWARD LENGTH=731
Length = 730
Score = 125 bits (315), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 82/133 (61%), Gaps = 17/133 (12%)
Query: 454 KDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
+D RTT+MI+NIPNKY++ +LL +D + +YDFLYLPIDF
Sbjct: 580 EDPRTTLMIKNIPNKYTRNMLLAAID-----------------EKNSGTYDFLYLPIDFK 622
Query: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSK 573
NKCNVGY F+N+ SP+ + LY+AF+ + W+ FNS K+ + YAR+QG AL HF+NS
Sbjct: 623 NKCNVGYAFINMVSPKFTIALYEAFNGKKWDKFNSEKVASLAYARIQGKAALIAHFQNSS 682
Query: 574 FPCDSDEYLPVVF 586
+ P+VF
Sbjct: 683 LMNEDRRCQPIVF 695
Score = 78.6 bits (192), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 3/105 (2%)
Query: 207 HFAAASTVPDD-GASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALRPSNKFVEF 265
HF+ P + ++G+LVV N P++S +L IF YG++K++RE+ + +KFVEF
Sbjct: 206 HFSIPKDNPSEKDVNQGTLVVFNLAPSVSNRDLENIFGVYGEIKEIRETPNKRHHKFVEF 265
Query: 266 FDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSHQP 310
FD R AD AL LN E+ G+R+ +E++RP G RR + P
Sbjct: 266 FDVRSADAALKALNRTEIAGKRIKLEHSRPG--GARRNMMLQMNP 308
>AT5G07930.3 | chr5:2530865-2532333 FORWARD LENGTH=295
Length = 294
Score = 111 bits (278), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 59/150 (39%), Positives = 91/150 (60%), Gaps = 7/150 (4%)
Query: 455 DTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNN 514
D TTVM+RNIPN+Y++++++ +D HC +N+ S ++E S+YDF+YLPIDF
Sbjct: 132 DHITTVMLRNIPNRYTREMMIQFMDKHCEEANK----SGKNEEFTISAYDFIYLPIDFRT 187
Query: 515 KCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSKF 574
N GY FVN T+ +A + A + +PW F S+K ++TYAR+Q + +K F++ +
Sbjct: 188 TMNKGYAFVNFTNAKAVSKFKAACNNKPWCHFYSKKELEITYARIQANELVKR-FQHMTY 246
Query: 575 PCDSDEYLPVVFSPPRDGKLLTEPVPLVGR 604
P + Y V FSP R G T +VG+
Sbjct: 247 P--EEAYSAVCFSPARSGGKDTVQTTMVGK 274
>AT2G42890.1 | chr2:17850077-17854205 FORWARD LENGTH=844
Length = 843
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 67/120 (55%), Gaps = 17/120 (14%)
Query: 451 ASCKDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPI 510
AS + RTT++I+NIPNKY+ K+L+ +D + YDFL LP
Sbjct: 673 ASGDEIRTTLIIKNIPNKYTYKMLVAEID-----------------EKHKGDYDFLCLPT 715
Query: 511 DFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFK 570
DF NKCN+G+ F+N+ SP V + F+ + WE FNS K+ + YA +QG AL + +
Sbjct: 716 DFKNKCNMGHAFINMVSPLHIVPFQQTFNGKIWEKFNSGKVASLAYAEIQGKSALASYMQ 775
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/97 (36%), Positives = 61/97 (62%), Gaps = 3/97 (3%)
Query: 207 HFAAASTVPDD-GASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALRPSNKFVEF 265
HF+ P + ++G+LV+ N +S EL ++F AYG+++++RE+ R ++F+E+
Sbjct: 267 HFSIPKENPSEKDMNQGTLVIFNVDTTVSNDELLQLFGAYGEIREIRETPNRRFHRFIEY 326
Query: 266 FDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRR 302
+D RDA+ AL LN E+ G+ + +E +RP G RR
Sbjct: 327 YDVRDAETALKALNRSEIGGKCIKLELSRPG--GARR 361
>AT2G37340.1 | chr2:15670372-15672331 REVERSE LENGTH=291
Length = 290
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 237 ELREIFQAYGDVKDVRESALRPSNKFVEFFDTRDADRALHELNGKELFGRRLVVEYTRPS 296
+L +F YG V+DV ++ FVEF D RDAD A H L+G++ G R+ VE++R +
Sbjct: 26 DLERLFSRYGRVRDV---DMKRDYAFVEFGDPRDADDARHYLDGRDFDGSRITVEFSRGA 82
Query: 297 LPGPR 301
G R
Sbjct: 83 PRGSR 87
Database: tair10
Posted date: Dec 8, 2010 11:30 AM
Number of letters in database: 11,106,569
Number of sequences in database: 27,416
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27416
Number of Hits to DB: 10,066,974
Number of extensions: 350813
Number of successful extensions: 910
Number of sequences better than 1.0e-05: 10
Number of HSP's gapped: 907
Number of HSP's successfully gapped: 17
Length of query: 683
Length of database: 11,106,569
Length adjustment: 105
Effective length of query: 578
Effective length of database: 8,227,889
Effective search space: 4755719842
Effective search space used: 4755719842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 115 (48.9 bits)