BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os01g0907900 Os01g0907900|Os01g0907900
(683 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os01g0907900 Similar to Terminal ear1 857 0.0
Os09g0531200 RNA recognition motif 2 domain containing protein 130 4e-30
Os02g0517531 RNA-binding region RNP-1 (RNA recognition moti... 129 7e-30
Os02g0719800 RNA-binding region RNP-1 (RNA recognition moti... 128 1e-29
Os05g0102800 Similar to AML1 128 1e-29
Os02g0319100 RNA-binding region RNP-1 (RNA recognition moti... 128 1e-29
Os02g0157900 119 5e-27
>Os01g0907900 Similar to Terminal ear1
Length = 683
Score = 857 bits (2215), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 455/666 (68%), Positives = 455/666 (68%)
Query: 18 NLLDAGAQAFYPAVGAPFPFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATM 77
NLLDAGAQAFYPAVGAPFPFQ ATM
Sbjct: 18 NLLDAGAQAFYPAVGAPFPFQQLPHQLYCPQPPPPPYQVMPVPPPPPPVGLPVPPLPATM 77
Query: 78 APQPGYCVPAAATVVDGPASRAVVLSLVPPHAPEDEIARAMAPFGXXXXXXXXXXXXEGV 137
APQPGYCVPAAATVVDGPASRAVVLSLVPPHAPEDEIARAMAPFG EGV
Sbjct: 78 APQPGYCVPAAATVVDGPASRAVVLSLVPPHAPEDEIARAMAPFGAVRAVDASAVASEGV 137
Query: 138 ATVYFFDLRSAEHAVTGVREQHIRQQCRLGQLYXXXXXXXXXXXXXXXXXXXXXHDDNRG 197
ATVYFFDLRSAEHAVTGVREQHIRQQCRLGQLY HDDNRG
Sbjct: 138 ATVYFFDLRSAEHAVTGVREQHIRQQCRLGQLYAAAAAAAASSPTWPPPAWDWPHDDNRG 197
Query: 198 LVLGQAVWAHFAAASTVPDDGASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALR 257
LVLGQAVWAHFAAASTVPDDGASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALR
Sbjct: 198 LVLGQAVWAHFAAASTVPDDGASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALR 257
Query: 258 PSNKFVEFFDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSHQPLAPTPPR 317
PSNKFVEFFDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSHQPLAPTPPR
Sbjct: 258 PSNKFVEFFDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSHQPLAPTPPR 317
Query: 318 LQAAWRXXXXXXXXXXXXXXXXXKAREGVVLLRRXXXXXXXXXXXXXXXNAGHERKSKGG 377
LQAAWR KAREGVVLLRR NAGHERKSKGG
Sbjct: 318 LQAAWRPAPAPSQSAQPSSSGSGKAREGVVLLRRSSGKGSSGSQSKGGGNAGHERKSKGG 377
Query: 378 KXXXXXXXXXXXXXXXXXXXPXXXXXXXXXXXXXXXXXXXXXXXXXEARFLFKEPEXXXX 437
K P EARFLFKEPE
Sbjct: 378 KSAAAACSTAASASSSTATAPSKQSQKGGGGGGGRGGSWRGQKSGWEARFLFKEPEAAAA 437
Query: 438 XXXXXXXSETHEPASCKDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEA 497
SETHEPASCKDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEA
Sbjct: 438 AAGDAAASETHEPASCKDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEA 497
Query: 498 QPFSSYDFLYLPIDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYA 557
QPFSSYDFLYLPIDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYA
Sbjct: 498 QPFSSYDFLYLPIDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYA 557
Query: 558 RVQGLDALKEHFKNSKFPCDSDEYLPVVFSPPRDGKLLTEPVPLVGRXXXXXXXXXXXXX 617
RVQGLDALKEHFKNSKFPCDSDEYLPVVFSPPRDGKLLTEPVPLVGR
Sbjct: 558 RVQGLDALKEHFKNSKFPCDSDEYLPVVFSPPRDGKLLTEPVPLVGRSPAPSSASGASSP 617
Query: 618 XXXXXXXVDPLAQELMTAPXXXXXXXXXXXXXXXXXXXXXVHGETXXXXXXXXXXXXXXQ 677
VDPLAQELMTAP VHGET Q
Sbjct: 618 PKSCAASVDPLAQELMTAPSSSGDGASSASSSNAHADEDDVHGETGGDRGDDAGLDLELQ 677
Query: 678 RLGYTD 683
RLGYTD
Sbjct: 678 RLGYTD 683
>Os09g0531200 RNA recognition motif 2 domain containing protein
Length = 323
Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 86/151 (56%), Gaps = 3/151 (1%)
Query: 456 TRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPF--SSYDFLYLPIDFN 513
T T++MIRNIPNK+ + L+ +LD HC N + + S YDF Y+PIDF
Sbjct: 168 TTTSLMIRNIPNKFLKARLMAILDQHCADENGKCHRRGGGGGRSVVKSEYDFFYVPIDFK 227
Query: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSK 573
N GY FVN+T+ AA RL W+ S K+C V A +QGLDA HF S
Sbjct: 228 TGFNKGYAFVNMTTATAARRLRAFLQDHRWDAAMSGKVCDVVPAAIQGLDAFVAHFSASC 287
Query: 574 FPCDSDEYLPVVFSPPRDGKLLTEPVPLVGR 604
FPC + E+LPV F PPRDG+ T+ +VGR
Sbjct: 288 FPCRTKEFLPVWFEPPRDGEQQTK-AHVVGR 317
>Os02g0517531 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 1001
Score = 129 bits (324), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 62/148 (41%), Positives = 86/148 (58%), Gaps = 19/148 (12%)
Query: 455 DTRTTVMIRNIPNKYSQKLLLNMLD-NHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
D+RTT+MI+NIPNKY+ K+LL +D NH +YDF+YLPIDF
Sbjct: 827 DSRTTLMIKNIPNKYTSKMLLAAIDENHK------------------GTYDFIYLPIDFK 868
Query: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSK 573
NKCNVGY F+N+T+P+ + Y+ F+ + WE FNS K+ + YAR+QG AL HF+NS
Sbjct: 869 NKCNVGYAFINMTNPQHIIPFYQTFNGKKWEKFNSEKVASLAYARIQGKSALIAHFQNSS 928
Query: 574 FPCDSDEYLPVVFSPPRDGKLLTEPVPL 601
+ P++F EP P+
Sbjct: 929 LMNEDKRCRPILFHSDGPNAGDQEPFPM 956
>Os02g0719800 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 848
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 83/149 (55%), Gaps = 17/149 (11%)
Query: 455 DTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFNN 514
DTRTT+MI+NIPNKY+ K+LL +D +YDF YLPIDF N
Sbjct: 682 DTRTTLMIKNIPNKYTSKMLLAAIDEFHK-----------------GTYDFFYLPIDFKN 724
Query: 515 KCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSKF 574
KCNVGY F+N+ SP V Y+AF+ + WE FNS K+ + YAR+QG AL HF+NS
Sbjct: 725 KCNVGYAFINMISPVHIVSFYQAFNGKKWEKFNSEKVASLAYARIQGRTALISHFQNSSL 784
Query: 575 PCDSDEYLPVVFSPPRDGKLLTEPVPLVG 603
+ P++F EP P+ G
Sbjct: 785 MNEDKRCRPILFHSNGPDAGNQEPFPING 813
Score = 77.8 bits (190), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/136 (36%), Positives = 74/136 (54%), Gaps = 26/136 (19%)
Query: 207 HFAAASTVPDD-GASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESALRPSNKFVEF 265
HF+ P D ++G+LV+ N P++S E+R+IF YG+VK++RE+ + +KF+EF
Sbjct: 266 HFSIPKENPSDKDLNQGTLVIFNLDPSVSNEEVRQIFGTYGEVKEIRETPNKKHHKFIEF 325
Query: 266 FDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRR------GHVSHQ---------- 309
+D R A+ AL LN E+ G+R+ +E PS PG RR GH Q
Sbjct: 326 YDVRAAEAALRSLNKSEIAGKRIKLE---PSRPGGTRRNLMQQLGHDIDQDEPRSYRIPH 382
Query: 310 ---PLAPTPPRLQAAW 322
P+A +PP AW
Sbjct: 383 VGSPIASSPP---GAW 395
>Os05g0102800 Similar to AML1
Length = 955
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/152 (42%), Positives = 88/152 (57%), Gaps = 19/152 (12%)
Query: 451 ASCKDTRTTVMIRNIPNKYSQKLLLNMLD-NHCILSNQQIEASCEDEAQPFSSYDFLYLP 509
A +D+RTT+MI+NIPNKY+ KLLL ++D NH +YDF+YLP
Sbjct: 773 AKGEDSRTTLMIKNIPNKYNCKLLLAVIDENH------------------RGTYDFIYLP 814
Query: 510 IDFNNKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHF 569
IDF NKCNVGY F+N+T P+ + YK F+ + WE FNS K+ + YAR+QG AL HF
Sbjct: 815 IDFKNKCNVGYAFINMTDPQHIIPFYKTFNGKKWEKFNSEKVASLAYARIQGRSALIAHF 874
Query: 570 KNSKFPCDSDEYLPVVFSPPRDGKLLTEPVPL 601
+NS + P++F EP P+
Sbjct: 875 QNSSLMNEDKWCRPMLFHKDGPNAGDQEPFPV 906
>Os02g0319100 RNA-binding region RNP-1 (RNA recognition motif) domain containing
protein
Length = 811
Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 62/135 (45%), Positives = 80/135 (59%), Gaps = 17/135 (12%)
Query: 454 KDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
KDTRTT+MI+NIPNKY+ +LL ++D E +YDF YLPIDF
Sbjct: 654 KDTRTTLMIKNIPNKYTSNMLLEVID----------------ETHE-GTYDFFYLPIDFK 696
Query: 514 NKCNVGYGFVNLTSPEAAVRLYKAFHKQPWEVFNSRKICQVTYARVQGLDALKEHFKNSK 573
NKCNVGY F+N+ SP V +KAF + WE FNS K+ + YAR+QG AL HF+NS
Sbjct: 697 NKCNVGYAFINMASPGYIVSFFKAFAGRKWEKFNSEKVVSLAYARIQGKAALVNHFQNSS 756
Query: 574 FPCDSDEYLPVVFSP 588
+ P++F P
Sbjct: 757 LMNEDKRCRPMLFDP 771
Score = 76.3 bits (186), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 102/233 (43%), Gaps = 50/233 (21%)
Query: 83 YCVPAAATVVDGPA------SRAVVLSLVPPHAPEDEIARAMAPFGXXXXXXXXXXXXEG 136
Y + A V G SR + + + + + E+ PFG G
Sbjct: 172 YSIQNGAGTVTGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEPFGDIRSMYTATKH-RG 230
Query: 137 VATVYFFDLRSAEHAVTGVREQHIRQQCRLGQLYXXXXXXXXXXXXXXXXXXXXXHDDNR 196
+ ++D+R A +A T ++ + +R+ R
Sbjct: 231 FVMISYYDIRHARNAKTALQSKPLRR---------------------------------R 257
Query: 197 GLVLGQAVWAHFAAASTVPDD-GASRGSLVVLNSLPAMSVFELREIFQAYGDVKDVRESA 255
L + H++ P D ++G+LV+ N PA+S EL +IF A+G+V+++RE+
Sbjct: 258 KLDI------HYSIPKENPSDKDMNQGTLVIFNLEPAVSNEELLQIFGAFGEVREIRETP 311
Query: 256 LRPSNKFVEFFDTRDADRALHELNGKELFGRRLVVEYTRPSLPGPRRRGHVSH 308
+ ++F+EF+D R A+ AL LN ++ G+R+ +E PS PG RR + H
Sbjct: 312 HKRHHRFIEFYDVRAAESALRSLNKSDIAGKRVKLE---PSRPGGARRSFIQH 361
>Os02g0157900
Length = 389
Score = 119 bits (299), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 67/147 (45%), Positives = 91/147 (61%), Gaps = 12/147 (8%)
Query: 454 KDTRTTVMIRNIPNKYSQKLLLNMLDNHCILSNQQIEASCEDEAQPFSSYDFLYLPIDFN 513
K TTVM+RNIPNK ++ ++ +LD+HC N++ E A+ YD +Y+ +DF
Sbjct: 212 KPAHTTVMVRNIPNKLTRSDMVRLLDDHCARENRRRGRGGEPRAE----YDLVYVRMDFG 267
Query: 514 --NK---CNVGYGFVNLTSPEAAVRLYKAFHKQPWE--VFNSRKICQVTYARVQGLDALK 566
NK N+GY FVN T+ EAA L +A H W+ F+S KI + AR+QG DAL
Sbjct: 268 MCNKERSSNMGYAFVNFTTAEAARGLQRALHGCRWKRSAFDSGKIIDIRAARIQGKDALV 327
Query: 567 EHF-KNSKFPCDSDEYLPVVFSPPRDG 592
HF + + + CD+DEYLP VFSPPRDG
Sbjct: 328 RHFGRTTYYECDTDEYLPAVFSPPRDG 354
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.320 0.136 0.414
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 16,662,010
Number of extensions: 593018
Number of successful extensions: 1673
Number of sequences better than 1.0e-10: 7
Number of HSP's gapped: 1659
Number of HSP's successfully gapped: 9
Length of query: 683
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 575
Effective length of database: 11,396,689
Effective search space: 6553096175
Effective search space used: 6553096175
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 159 (65.9 bits)