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Os02g0719800

blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II

Description : RNA-binding region RNP-1 (RNA recognition motif) domain containing protein.


log2(Expression) ~ Norm(μ, σ2)

μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8

par. value (S.E.)
α : 12.2 (0.018) R2 : 0.432
β1 : -- (--) R2dD : -- R2D : --
β2 : 0.849 (0.0466) R2dC : 0.416 R2C : 0.404
β3 : -- (--) R2dE : -- R2E : --
β4 : -- (--) R2dD*C : -- R2D*C : --
β5 : -- (--) R2dD*E : -- R2D*E : --
γ1 : 0.159 (0.0378) R2dN8 : 0.0286 R2N8 : 0.016
σ : 0.339
deviance : 52.47
__
_____
C
peak time of C : 19.2
E
wheather : --
threshold : --
memory length : --
response mode : --
dose dependency : --
G
type of G : --
peak or start time of G : --
open length of G : --

__

Dependence on each variable

Residual plot

Process of the parameter reduction
(fixed parameters. wheather = temperature, response mode = > th, dose dependency = dose independent, type of G = no)

deviance σ α β1 β2 β3 β4 β5 γ1 peak time of C threshold memory length peak or start time of G open length of G
44.91 0.315 12.2 -0.425 0.801 0.447 0.606 -0.302 0.0352 19.1 19.67 708 -- --
45.1 0.313 12.2 -0.389 0.8 0.499 0.517 -- 0.0363 19.1 19.7 748 -- --
45.58 0.314 12.2 -0.427 0.816 0.432 -- -0.186 0.0252 19 20.68 926 -- --
45.67 0.315 12.2 -0.39 0.816 0.445 -- -- 0.0344 19 20.5 916 -- --
76.88 0.408 12.2 -0.412 -- 0.572 -- 0.0285 -0.0179 -- 21.2 611 -- --
50.51 0.333 12.2 -0.204 0.846 -- 0.525 -- 0.134 19.3 -- -- -- --
51.25 0.335 12.2 -0.215 0.847 -- -- -- 0.135 19.3 -- -- -- --
69.82 0.389 12.2 -0.357 -- 0.66 -- -- 0.036 -- 28.35 443 -- --
48.88 0.326 12.2 -- 0.816 0.316 -- -- 0.086 19 21.3 856 -- --
89.29 0.442 12.2 -0.23 -- -- -- -- 0.121 -- -- -- -- --
52.47 0.339 12.2 -- 0.849 -- -- -- 0.159 19.2 -- -- -- --
72.61 0.397 12.2 -- -- 0.652 -- -- 0.0872 -- 28.49 476 -- --
90.69 0.445 12.2 -- -- -- -- -- 0.146 -- -- -- -- --

Results of the grid search

Summarized heatmap of deviance
 Histogram

Local optima within top1000 grid-points

rank deviance wheather threshold memory length response mode dose dependency type of G peak or start time of G open length of G
1 43.39 wind 3.0 43200 < th dose dependent rect. 4 2
2 43.41 wind 9.0 14400 > th dose dependent rect. 6 5
4 43.46 humidity 80.0 14400 > th dose independent rect. 15 1
5 43.48 wind 9.0 14400 > th dose dependent rect. 10 1
10 43.60 wind 3.0 43200 < th dose dependent rect. 1 5
11 43.64 humidity 80.0 14400 > th dose dependent rect. 14 1
16 43.76 precipitation 0.1 14400 < th dose independent rect. 17 1
17 43.76 precipitation 0.1 14400 < th dose dependent rect. 17 1
26 43.91 humidity 80.0 14400 < th dose independent rect. 14 1
38 44.09 temperature 20.0 720 > th dose independent rect. 21 12
39 44.10 precipitation 0.1 14400 > th dose independent rect. 17 1
41 44.12 wind 1.0 43200 > th dose dependent rect. 5 1
43 44.15 temperature 20.0 720 > th dose independent rect. 21 20
48 44.18 wind 9.0 14400 > th dose independent rect. 7 4
49 44.18 wind 9.0 4320 < th dose independent rect. 17 4
52 44.22 temperature 20.0 720 > th dose independent rect. 21 18
56 44.23 wind 9.0 4320 > th dose independent rect. 17 4
60 44.25 wind 9.0 14400 > th dose independent rect. 9 2
63 44.28 temperature 20.0 720 > th dose independent rect. 21 14
68 44.32 wind 9.0 4320 > th dose independent rect. 17 12
89 44.41 wind 3.0 43200 > th dose independent rect. 5 1
90 44.41 wind 9.0 14400 < th dose independent rect. 9 2
91 44.41 precipitation 0.1 14400 < th dose independent rect. 9 7
92 44.41 wind 9.0 4320 < th dose independent rect. 17 12
95 44.41 precipitation 0.1 14400 < th dose dependent rect. 9 7
97 44.43 wind 3.0 43200 < th dose independent rect. 5 1
104 44.44 precipitation 0.1 14400 > th dose independent rect. 9 7
116 44.47 temperature 20.0 720 > th dose dependent rect. 6 3
135 44.51 temperature 20.0 720 > th dose independent rect. 12 21
144 44.53 temperature 15.0 720 > th dose dependent rect. 23 10
157 44.57 wind 1.0 43200 > th dose dependent rect. 4 4
159 44.58 wind 9.0 14400 < th dose independent rect. 7 4
162 44.59 temperature 20.0 720 > th dose independent sin 8 NA
163 44.59 wind 3.0 43200 < th dose independent rect. 7 1
164 44.59 wind 3.0 43200 < th dose independent rect. 5 4
185 44.62 wind 9.0 4320 < th dose independent rect. 17 16
193 44.63 temperature 20.0 720 > th dose independent rect. 12 23
196 44.63 temperature 15.0 720 > th dose dependent rect. 3 6
198 44.64 atmosphere 995.0 43200 < th dose independent rect. 13 9
207 44.65 wind 3.0 43200 > th dose independent rect. 5 4
215 44.66 precipitation 0.1 14400 < th dose independent rect. 13 1
218 44.66 atmosphere 995.0 43200 > th dose independent rect. 12 10
219 44.66 precipitation 0.1 14400 < th dose dependent rect. 13 1
223 44.67 wind 3.0 43200 > th dose independent rect. 7 2
238 44.68 wind 1.0 43200 > th dose dependent rect. 23 9
252 44.70 precipitation 0.1 14400 > th dose independent rect. 13 1
268 44.71 wind 9.0 4320 > th dose dependent rect. 17 4
282 44.73 wind 9.0 4320 < th dose independent rect. 17 8
288 44.73 temperature 15.0 720 > th dose dependent rect. 1 8
295 44.74 wind 1.0 43200 > th dose dependent rect. 7 1
321 44.77 wind 9.0 43200 < th dose dependent rect. 7 1
322 44.77 precipitation 0.1 14400 > th dose dependent rect. 17 1
346 44.79 temperature 20.0 720 > th dose independent rect. 16 17
354 44.80 wind 9.0 4320 > th dose independent rect. 17 2
361 44.81 temperature 20.0 1440 > th dose independent rect. 21 2
372 44.82 temperature 20.0 720 > th dose independent rect. 10 23
378 44.83 temperature 20.0 720 < th dose independent rect. 15 19
389 44.83 wind 9.0 4320 > th dose dependent rect. 17 12
390 44.83 wind 9.0 4320 > th dose dependent rect. 15 15
394 44.84 precipitation 0.1 14400 < th dose independent rect. 12 4
399 44.84 temperature 20.0 720 < th dose independent rect. 22 22
400 44.84 precipitation 0.1 14400 < th dose dependent rect. 12 4
423 44.87 atmosphere 995.0 43200 > th dose independent sin 20 NA
424 44.87 atmosphere 995.0 43200 > th dose independent rect. 14 2
426 44.87 wind 3.0 43200 < th dose independent rect. 1 8
429 44.87 humidity 80.0 14400 > th dose independent rect. 10 13
437 44.87 atmosphere 995.0 43200 < th dose dependent rect. 15 1
453 44.88 temperature 20.0 720 > th dose independent rect. 5 23
460 44.89 humidity 60.0 14400 > th dose independent rect. 21 1
461 44.89 atmosphere 995.0 43200 > th dose independent rect. 13 5
473 44.90 atmosphere 995.0 43200 < th dose independent rect. 14 2
479 44.90 humidity 80.0 14400 > th dose independent rect. 12 11
484 44.90 precipitation 0.1 14400 > th dose dependent rect. 9 7
517 44.93 atmosphere 995.0 43200 < th dose independent rect. 13 5
529 44.93 temperature 20.0 720 < th dose independent rect. 5 23
576 44.96 humidity 90.0 14400 < th dose dependent rect. 14 1
604 44.97 precipitation 0.1 14400 > th dose dependent rect. 7 9
608 44.98 atmosphere 995.0 43200 < th dose independent sin 20 NA
672 45.01 temperature 20.0 720 < th dose independent sin 10 NA
690 45.02 temperature 20.0 720 > th dose independent no NA NA
700 45.02 temperature 20.0 720 > th dose independent rect. 3 23
706 45.02 wind 9.0 4320 > th dose dependent rect. 15 6
744 45.04 precipitation 0.1 14400 > th dose dependent rect. 13 1
749 45.05 temperature 20.0 720 < th dose independent no NA NA
750 45.05 temperature 20.0 1440 < th dose independent rect. 21 2
766 45.06 precipitation 0.1 14400 < th dose independent rect. 7 9
783 45.06 precipitation 0.1 14400 < th dose dependent rect. 7 9
792 45.07 precipitation 0.1 14400 > th dose independent rect. 7 9
801 45.07 temperature 25.0 270 < th dose dependent rect. 7 2
809 45.08 humidity 80.0 14400 > th dose independent sin 20 NA
820 45.08 temperature 20.0 720 > th dose independent rect. 1 23
831 45.09 temperature 20.0 720 < th dose independent rect. 8 23
907 45.13 wind 1.0 43200 > th dose independent rect. 23 7
925 45.14 precipitation 0.1 270 > th dose independent rect. 20 8
932 45.14 atmosphere 995.0 43200 > th dose independent rect. 4 15
963 45.15 atmosphere 995.0 43200 < th dose dependent rect. 14 8
975 45.16 wind 3.0 14400 < th dose independent rect. 22 3