Os05g0102800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Similar to AML1.
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Os05g0102800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Similar to AML1.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 71.09 | 0.396 | 10.7 | -1.77 | 1.97 | -0.602 | 0.176 | 0.596 | -0.408 | 6.09 | 27.13 | 1425 | -- | -- |
| 71.68 | 0.394 | 10.7 | -1.69 | 1.97 | -0.605 | 0.151 | -- | -0.37 | 6.07 | 20 | 1440 | -- | -- |
| 71.16 | 0.393 | 10.8 | -1.77 | 1.97 | -0.602 | -- | 0.598 | -0.409 | 6.09 | 27.19 | 1422 | -- | -- |
| 71.72 | 0.394 | 10.7 | -1.68 | 1.97 | -0.597 | -- | -- | -0.379 | 6.05 | 19.96 | 1440 | -- | -- |
| 271.63 | 0.768 | 10.8 | -1.69 | -- | -0.623 | -- | 0.531 | -0.343 | -- | 29.19 | 1430 | -- | -- |
| 84.12 | 0.43 | 10.7 | -1.6 | 1.98 | -- | 0.206 | -- | -0.227 | 6.01 | -- | -- | -- | -- |
| 84.22 | 0.43 | 10.7 | -1.6 | 1.98 | -- | -- | -- | -0.228 | 6 | -- | -- | -- | -- |
| 271.72 | 0.768 | 10.8 | -1.65 | -- | -0.648 | -- | -- | -0.355 | -- | 28.16 | 1435 | -- | -- |
| 126.54 | 0.524 | 10.8 | -- | 2.04 | -0.942 | -- | -- | -0.379 | 5.99 | 10 | 25190 | -- | -- |
| 287.48 | 0.792 | 10.7 | -1.54 | -- | -- | -- | -- | -0.183 | -- | -- | -- | -- | -- |
| 151.56 | 0.576 | 10.7 | -- | 1.96 | -- | -- | -- | -0.05 | 6.05 | -- | -- | -- | -- |
| 316.07 | 0.828 | 10.7 | -- | -- | -0.997 | -- | -- | -0.229 | -- | 60 | 30248 | -- | -- |
| 350.08 | 0.873 | 10.7 | -- | -- | -- | -- | -- | -0.0121 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 67.15 | wind | 5.0 | 43200 | < th | dose independent | rect. | 8 | 1 |
| 2 | 67.29 | wind | 5.0 | 43200 | > th | dose independent | rect. | 8 | 1 |
| 3 | 67.93 | humidity | 70.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 6 | 68.01 | wind | 1.0 | 43200 | > th | dose independent | rect. | 2 | 3 |
| 7 | 68.09 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 8 | 1 |
| 10 | 68.20 | wind | 1.0 | 43200 | < th | dose independent | rect. | 2 | 3 |
| 11 | 68.26 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 18 | 1 |
| 25 | 68.42 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 26 | 68.50 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 43 | 68.59 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 1 |
| 45 | 68.62 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 11 |
| 48 | 68.65 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 18 | 13 |
| 55 | 68.70 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 5 |
| 60 | 68.75 | wind | 1.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 64 | 68.84 | wind | 1.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 66 | 68.89 | radiation | 30.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 84 | 69.00 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 2 | 3 |
| 88 | 69.08 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 90 | 69.12 | radiation | 10.0 | 14400 | > th | dose independent | rect. | 6 | 1 |
| 103 | 69.16 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 18 | 1 |
| 108 | 69.24 | humidity | 80.0 | 43200 | > th | dose independent | rect. | 20 | 1 |
| 122 | 69.36 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 8 |
| 127 | 69.38 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 17 |
| 142 | 69.45 | precipitation | 0.1 | 43200 | < th | dose independent | rect. | 21 | 2 |
| 144 | 69.45 | precipitation | 0.1 | 43200 | < th | dose dependent | rect. | 21 | 2 |
| 146 | 69.46 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 9 |
| 147 | 69.47 | temperature | 30.0 | 43200 | > th | dose independent | rect. | 10 | 1 |
| 148 | 69.48 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 10 | 1 |
| 150 | 69.49 | humidity | 70.0 | 43200 | > th | dose independent | rect. | 17 | 12 |
| 157 | 69.50 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 9 | 19 |
| 162 | 69.52 | radiation | 20.0 | 43200 | > th | dose independent | rect. | 13 | 1 |
| 168 | 69.53 | precipitation | 0.1 | 43200 | > th | dose independent | rect. | 21 | 2 |
| 173 | 69.54 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 5 |
| 182 | 69.56 | precipitation | 0.1 | 43200 | > th | dose dependent | rect. | 21 | 2 |
| 205 | 69.60 | humidity | 80.0 | 43200 | < th | dose independent | rect. | 19 | 2 |
| 216 | 69.62 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 1 |
| 217 | 69.62 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 1 | 10 |
| 226 | 69.63 | radiation | 20.0 | 14400 | > th | dose independent | rect. | 6 | 4 |
| 231 | 69.63 | temperature | 30.0 | 43200 | < th | dose independent | rect. | 3 | 8 |
| 302 | 69.73 | wind | 5.0 | 43200 | > th | dose independent | rect. | 21 | 5 |
| 343 | 69.76 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 13 |
| 351 | 69.78 | radiation | 10.0 | 43200 | > th | dose independent | rect. | 9 | 7 |
| 352 | 69.78 | temperature | 30.0 | 43200 | > th | dose dependent | sin | 10 | NA |
| 376 | 69.82 | temperature | 30.0 | 43200 | > th | dose dependent | rect. | 10 | 1 |
| 390 | 69.85 | wind | 1.0 | 43200 | < th | dose dependent | rect. | 10 | 1 |
| 392 | 69.86 | temperature | 25.0 | 43200 | > th | dose dependent | rect. | 22 | 1 |
| 405 | 69.89 | radiation | 20.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 406 | 69.89 | humidity | 70.0 | 43200 | < th | dose independent | rect. | 17 | 13 |
| 481 | 69.92 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 13 |
| 494 | 69.93 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 1 |
| 541 | 69.98 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 23 | 3 |
| 545 | 69.99 | wind | 5.0 | 43200 | > th | dose independent | rect. | 20 | 8 |
| 584 | 70.05 | wind | 5.0 | 43200 | < th | dose independent | rect. | 20 | 13 |
| 591 | 70.06 | radiation | 30.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 592 | 70.06 | radiation | 20.0 | 14400 | < th | dose dependent | rect. | 9 | 1 |
| 613 | 70.08 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 20 | 9 |
| 631 | 70.10 | wind | 5.0 | 43200 | < th | dose independent | rect. | 21 | 5 |
| 669 | 70.11 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 19 | 1 |
| 676 | 70.12 | radiation | 20.0 | 1440 | > th | dose independent | rect. | 11 | 5 |
| 679 | 70.12 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 681 | 70.12 | temperature | 15.0 | 43200 | > th | dose dependent | rect. | 19 | 3 |
| 724 | 70.16 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 19 | 1 |
| 745 | 70.18 | temperature | 30.0 | 43200 | < th | dose dependent | rect. | 21 | 1 |
| 796 | 70.20 | wind | 5.0 | 43200 | > th | dose dependent | rect. | 21 | 1 |
| 812 | 70.22 | temperature | 25.0 | 43200 | < th | dose independent | rect. | 20 | 1 |
| 907 | 70.28 | radiation | 20.0 | 14400 | > th | dose independent | sin | 11 | NA |
| 913 | 70.28 | temperature | 20.0 | 43200 | > th | dose dependent | rect. | 3 | 1 |
| 959 | 70.30 | radiation | 1.0 | 1440 | > th | dose dependent | rect. | 12 | 4 |
| 964 | 70.31 | radiation | 10.0 | 43200 | > th | dose independent | sin | 20 | NA |
| 987 | 70.34 | temperature | 30.0 | 43200 | < th | dose independent | sin | 10 | NA |
| 1000 | 70.35 | temperature | 30.0 | 43200 | > th | dose independent | sin | 10 | NA |