BLASTP 2.2.23 [Feb-03-2010]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment:
Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala,
Aleksandr Morgulis, Alejandro A. Schäffer, and Yi-Kuo Yu (2005) "Protein database
searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Os04g0677800 Os04g0677800|AK102572
(682 letters)
Database: rap3
52,214 sequences; 17,035,801 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Os04g0677800 Zinc finger, RanBP2-type domain containing pro... 1325 0.0
Os04g0595300 Zinc finger, RanBP2-type domain containing pro... 600 e-171
Os01g0116600 Zinc finger, RanBP2-type domain containing pro... 599 e-171
Os03g0177400 EF-1 alpha 267 2e-71
AK061009 262 6e-70
AK108309 255 8e-68
Os04g0270100 Similar to G1 to S phase transition protein 1 ... 236 4e-62
AK069160 230 2e-60
AK110320 228 8e-60
Os02g0456200 Similar to G1 to S phase transition protein 1 ... 187 3e-47
AK110624 182 7e-46
AK110735 146 5e-35
Os02g0595700 Chloroplast translational elongation factor Tu 128 1e-29
Os03g0851100 Similar to Translational elongation factor EF-TuM 127 3e-29
AK108374 119 6e-27
Os01g0752700 Similar to GTP-binding protein 74 4e-13
>Os04g0677800 Zinc finger, RanBP2-type domain containing protein
Length = 682
Score = 1325 bits (3429), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 645/682 (94%), Positives = 645/682 (94%)
Query: 1 MFIPELDNRSDPQEPSRNPGIWQCTICEHGNDAKKKSCEQCGVLRYFSLYFNNALEVDGR 60
MFIPELDNRSDPQEPSRNPGIWQCTICEHGNDAKKKSCEQCGVLRYFSLYFNNALEVDGR
Sbjct: 1 MFIPELDNRSDPQEPSRNPGIWQCTICEHGNDAKKKSCEQCGVLRYFSLYFNNALEVDGR 60
Query: 61 AKRRDKHYAVSVLARTLFSPSSAKSKDVVLSGGFKASRNATGSTRATLDALHKTYMTRKE 120
AKRRDKHYAVSVLARTLFSPSSAKSKDVVLSGGFKASRNATGSTRATLDALHKTYMTRKE
Sbjct: 61 AKRRDKHYAVSVLARTLFSPSSAKSKDVVLSGGFKASRNATGSTRATLDALHKTYMTRKE 120
Query: 121 RHINIVPFKFDTPSPDDVVATGLKSSRSFRKVDTDAPHVTEKRVMDNDSSTPEKDTTADS 180
RHINIVPFKFDTPSPDDVVATGLKSSRSFRKVDTDAPHVTEKRVMDNDSSTPEKDTTADS
Sbjct: 121 RHINIVPFKFDTPSPDDVVATGLKSSRSFRKVDTDAPHVTEKRVMDNDSSTPEKDTTADS 180
Query: 181 NLPVKSNEFXXXXXXXXXXXQNETLCLDHELQHLSLERKSQKSKANIKKPVSSSLYKPEP 240
NLPVKSNEF QNETLCLDHELQHLSLERKSQKSKANIKKPVSSSLYKPEP
Sbjct: 181 NLPVKSNEFGESSESVSVGSQNETLCLDHELQHLSLERKSQKSKANIKKPVSSSLYKPEP 240
Query: 241 WMLQHEDEGIPRQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSF 300
WMLQHEDEGIPRQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMH SF
Sbjct: 241 WMLQHEDEGIPRQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHKYEKEAKEKGKGSF 300
Query: 301 AYAWAMDESADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAIL 360
AYAWAMDESADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAIL
Sbjct: 301 AYAWAMDESADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAIL 360
Query: 361 VIDASIGSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQL 420
VIDASIGSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQL
Sbjct: 361 VIDASIGSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQL 420
Query: 421 GAFLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVS 480
GAFLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVS
Sbjct: 421 GAFLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVS 480
Query: 481 KPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLA 540
KPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLA
Sbjct: 481 KPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLA 540
Query: 541 RAGDNVAIGLQGIDPSHIMPGGVICHPDYPVSVASCLELKILVLDITVPILVGLQFELHI 600
RAGDNVAIGLQGIDPSHIMPGGVICHPDYPVSVASCLELKILVLDITVPILVGLQFELHI
Sbjct: 541 RAGDNVAIGLQGIDPSHIMPGGVICHPDYPVSVASCLELKILVLDITVPILVGLQFELHI 600
Query: 601 HHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALGR 660
HHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTA FSNLKALGR
Sbjct: 601 HHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAVIEVKLEKEVCVEEFSNLKALGR 660
Query: 661 VFLRSQGNTIAVGIVSRVREQA 682
VFLRSQGNTIAVGIVSRVREQA
Sbjct: 661 VFLRSQGNTIAVGIVSRVREQA 682
>Os04g0595300 Zinc finger, RanBP2-type domain containing protein
Length = 656
Score = 600 bits (1547), Expect = e-171, Method: Compositional matrix adjust.
Identities = 294/478 (61%), Positives = 357/478 (74%), Gaps = 8/478 (1%)
Query: 207 LDHELQHLSLERKSQKSKANIKKPVSSSLYKPEPWMLQHEDEGIPRQLNLAIVGHVDSGK 266
L ++Q L LE K++ + KP YKPE WM +E+ G+ QLNLAIVGHVDSGK
Sbjct: 181 LSSDIQKLGLE----KNEVDTAKPYLPEEYKPEKWMFANEESGVLSQLNLAIVGHVDSGK 236
Query: 267 STLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESADERERGITMTVGVAYF 326
STL GRLLH LGRISKK MH SFAYAWAMDES++ERERG+TMTV VAY
Sbjct: 237 STLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSEERERGVTMTVAVAYL 296
Query: 327 DTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEAGM---GINGIGQTKE 383
+TK Y VVLLDSPGHKDFVPNMISGATQ+DAAILV+DA GSFEAGM G +GQTKE
Sbjct: 297 ETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDACTGSFEAGMDGEGGKSVGQTKE 356
Query: 384 HSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQLGAFLRSCGYKDSAVAWVPISAME 443
H+QL+RSFGV+ LIV VNKMD++ YSKERF FIK QLG+FLRSC +KDS+V W+P+SA+E
Sbjct: 357 HAQLIRSFGVEQLIVAVNKMDAIGYSKERFEFIKVQLGSFLRSCNFKDSSVTWIPLSAVE 416
Query: 444 NENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSHKLGQVAIGG 503
N+NL+ SD RL+SWY G CLL AID+L PSRDVSKPL LPICDV S GQ A G
Sbjct: 417 NQNLIKIPSDVRLTSWYQGFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQSTGQFAAFG 476
Query: 504 KVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAGDNVAIGLQGIDPSHIMPGGV 563
K+E GA R GSK+L+ P GE+A VK+IER+S+SC++ARAGDNVA+ LQGID S ++ GG+
Sbjct: 477 KLETGAIRIGSKVLISPCGEVAAVKSIERDSNSCDIARAGDNVAVSLQGIDGSKLILGGI 536
Query: 564 ICHPDYPVSVASCLELKILVLDITVPILVGLQFELHIHHAKVSASMVKILSLLEQKTGKA 623
+C+P +PV V++ LEL++LVLD+T+PIL+G Q E HIHH K +A + KI++LL+ K GK
Sbjct: 537 LCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVALLD-KAGKP 595
Query: 624 SKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALGRVFLRSQGNTIAVGIVSRVREQ 681
SK PRFL S+Q A FS +ALGR FLRS G+TIAVG+V+RV Q
Sbjct: 596 SKTAPRFLKSKQNAVVQVTLDAPVCVQEFSKCRALGRAFLRSSGSTIAVGVVTRVLRQ 653
>Os01g0116600 Zinc finger, RanBP2-type domain containing protein
Length = 655
Score = 599 bits (1545), Expect = e-171, Method: Compositional matrix adjust.
Identities = 295/486 (60%), Positives = 361/486 (74%), Gaps = 10/486 (2%)
Query: 201 QNETLC--LDHELQHLSLERKSQKSKANIKKPVSSSLYKPEPWMLQHEDEGIPRQLNLAI 258
QNE + L ++Q L LE K++ + KP YKPE WM +E+ G+ QLNLAI
Sbjct: 172 QNEDVAQKLSSDIQKLGLE----KNEVDTAKPYLPEEYKPEKWMFANEESGVLSQLNLAI 227
Query: 259 VGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESADERERGIT 318
VGHVDSGKSTL GRLLH LGRISKK MH SFAYAWAMDES++ERERG+T
Sbjct: 228 VGHVDSGKSTLSGRLLHLLGRISKKDMHKNEKEAKEKGKGSFAYAWAMDESSEERERGVT 287
Query: 319 MTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEAGM---GI 375
MTV VAY +T Y VVLLDSPGHKDFVPNMISGATQ+DAAILV+DA GSFEAGM G
Sbjct: 288 MTVAVAYLETNKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDACTGSFEAGMDGEGG 347
Query: 376 NGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQLGAFLRSCGYKDSAVA 435
+GQTKEH+QL+RSFGV+ LIV VNKMD++ YSKERF FIK QLG+FLR+C +KDS+V
Sbjct: 348 KSVGQTKEHAQLIRSFGVEQLIVAVNKMDAIGYSKERFEFIKVQLGSFLRACNFKDSSVT 407
Query: 436 WVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICDVFSSHK 495
W+P+SA+EN+NL+ SD RL+SWY G CLL AID+L PSRDVSKPL LPICDV S
Sbjct: 408 WIPLSAVENQNLIKIPSDVRLTSWYQGFCLLDAIDSLQLPSRDVSKPLILPICDVIKSQS 467
Query: 496 LGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAGDNVAIGLQGIDP 555
GQ+A GK+E GA R GSK+L+ P GE+A VK+IER+S+SC++ARAGDNVA+ LQGID
Sbjct: 468 TGQLAAFGKLETGAIRIGSKVLISPCGEVATVKSIERDSNSCDIARAGDNVAVSLQGIDG 527
Query: 556 SHIMPGGVICHPDYPVSVASCLELKILVLDITVPILVGLQFELHIHHAKVSASMVKILSL 615
S ++ GG++C+P +PV V++ LEL++LVLD+T+PIL+G Q E HIHH K +A + KI++L
Sbjct: 528 SKLIAGGILCNPGFPVPVSNFLELRVLVLDVTIPILIGYQVEFHIHHVKEAARVTKIVAL 587
Query: 616 LEQKTGKASKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALGRVFLRSQGNTIAVGIV 675
L+ K GK SK PRFL S+Q A FS +ALGR FLRS G+TIAVG+V
Sbjct: 588 LD-KAGKPSKTAPRFLKSKQNAVVQVTLDAPVCVEEFSKCRALGRAFLRSGGSTIAVGVV 646
Query: 676 SRVREQ 681
+RV Q
Sbjct: 647 TRVLGQ 652
>Os03g0177400 EF-1 alpha
Length = 447
Score = 267 bits (682), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 141/432 (32%), Positives = 237/432 (54%), Gaps = 9/432 (2%)
Query: 253 QLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESADE 312
+N+ ++GHVDSGKST G L++ LG I K+ + SF YAW +D+ E
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAE 66
Query: 313 RERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEAG 372
RERGIT+ + + F+T Y+ ++D+PGH+DF+ NMI+G +Q+D A+L+ID++ G FEA
Sbjct: 67 RERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEA- 125
Query: 373 MGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSV--EYSKERFNFIKSQLGAFLRSCGYK 430
GI+ GQT+EH+ L + GV +I NKMD+ +YSK R++ I ++ ++L+ GY
Sbjct: 126 -GISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYN 184
Query: 431 DSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICDV 490
+ +VPIS E +N++ +++ WY G LL+A+D + P R KPLRLP+ DV
Sbjct: 185 PDKIPFVPISGFEGDNMIERSTNL---DWYKGPTLLEALDQINEPKRPSDKPLRLPLQDV 241
Query: 491 FSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAGDNVAIGL 550
+ +G V + G+VE G + G + P G VK++E + + A GDNV +
Sbjct: 242 YKIGGIGTVPV-GRVETGVLKPGMVVTFGPSGLTTEVKSVEMHHEALQEALPGDNVGFNV 300
Query: 551 QGIDPSHIMPGGVICH-PDYPVSVASCLELKILVLDITVPILVGLQFELHIHHAKVSASM 609
+ + + G V + D P A+ ++++++ I G L H + ++
Sbjct: 301 KNVAVKDLKRGYVASNSKDDPAKEAASFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKF 360
Query: 610 VKILSLLEQKTGKASKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALGRVFLRSQGNT 669
++++ +++++GK +K P+FL + FS LGR +R T
Sbjct: 361 AELVTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSEYPPLGRFAVRDMRQT 420
Query: 670 IAVGIVSRVREQ 681
+AVG++ V ++
Sbjct: 421 VAVGVIKNVEKK 432
>AK061009
Length = 450
Score = 262 bits (669), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/433 (34%), Positives = 234/433 (54%), Gaps = 9/433 (2%)
Query: 252 RQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESAD 311
+ L+L ++GHVD+GKST G L++ G I K+ + SF YAW +D+
Sbjct: 6 QHLSLVVIGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEASEMGKASFKYAWVLDKLKA 65
Query: 312 ERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEA 371
ERERGIT+ + + F++ ++D+PGH+DF+ NMI+G +Q+DAA+L+I + G FEA
Sbjct: 66 ERERGITIDIALWKFESPKSVFTIIDAPGHRDFIKNMITGTSQADAAVLMIASPQGEFEA 125
Query: 372 GMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMD--SVEYSKERFNFIKSQLGAFLRSCGY 429
GI+ GQT+EH+ L + GV +IV NKMD +V YS+ R+ IK ++G++L+ GY
Sbjct: 126 --GISKDGQTREHALLAFTLGVKQMIVCTNKMDDKTVNYSEARYEEIKKEVGSYLKKVGY 183
Query: 430 KDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPICD 489
V +VPIS +N++ + + WY G LL+A+D L PPSR V KPLRLP+ D
Sbjct: 184 NVDKVRFVPISGWAGDNMIEKSDNM---PWYKGPTLLEALDLLEPPSRPVDKPLRLPLQD 240
Query: 490 VFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAGDNVAIG 549
V+ +G V + G+VE G + G + P G VK+IE + + A GDNV
Sbjct: 241 VYKIGGIGTVPV-GRVETGVMKPGDVVTFAPSGVTTEVKSIEMHHEALPEAVPGDNVGFN 299
Query: 550 LQGIDPSHIMPGGVICH-PDYPVSVASCLELKILVLDITVPILVGLQFELHIHHAKVSAS 608
++ I I G V + + P + +++VL+ I G L H ++
Sbjct: 300 VKNISVKDIRRGFVCSNTKNDPAKECETFQAQVIVLNHPGQITNGYAPVLDCHTCHIACK 359
Query: 609 MVKILSLLEQKTGKASKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALGRVFLRSQGN 668
+ S +++++GK +K P+ + S A F++ LGR +R
Sbjct: 360 FGTLESKIDRRSGKEIEKEPKAIKSGDAAIVTMVPSKPMCVETFTDYPPLGRFAVRDMRQ 419
Query: 669 TIAVGIVSRVREQ 681
T+AVGI+ V ++
Sbjct: 420 TVAVGIIKSVAKK 432
>AK108309
Length = 460
Score = 255 bits (651), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 143/441 (32%), Positives = 230/441 (52%), Gaps = 20/441 (4%)
Query: 253 QLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESADE 312
+N+ ++GHVDS KST G L++ G I K+ + SF YAW +D+ E
Sbjct: 8 HINVVVIGHVDSSKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKSE 67
Query: 313 RERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEAG 372
RERGIT+ + + F+T Y+V ++D+PGH+DF+ NMI+G +Q+D AIL+I A G FEA
Sbjct: 68 RERGITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIAAGTGEFEA- 126
Query: 373 MGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQLGAFLRSCGYKDS 432
GI+ GQT+EH+ L + GV LIV +NKMD+ ++S+ R+ I + F++ G+
Sbjct: 127 -GISKDGQTREHALLAYTLGVKQLIVAINKMDTTKWSEARYQEIIKETSGFIKKVGFNPK 185
Query: 433 AVAWVPISAMENENLMTTASDTRLSSWYD-----------GNCLLKAIDTLPPPSRDVSK 481
V +VPIS +N++ +++ WY G LL+AID + P+R K
Sbjct: 186 HVPFVPISGFNGDNMIDVSTN---CPWYKGWEKETKAKATGKTLLEAIDAIDSPTRPTDK 242
Query: 482 PLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLAR 541
PLRLP+ DV+ +G V + G+VE G ++G + P G VK++E +
Sbjct: 243 PLRLPLQDVYKIGGIGTVPV-GRVETGVIKAGMVVTFAPAGVTTEVKSVEMHHEQLPEGL 301
Query: 542 AGDNVAIGLQGIDPSHIMPGGVI--CHPDYPVSVASCLELKILVLDITVPILVGLQFELH 599
GDNV ++ + I G V D P S +++VL+ + G L
Sbjct: 302 PGDNVGFNVKNVSVKEIRRGNVAGDSKTDPPKGCDS-FNAQVIVLNHPGQVGAGYAPVLD 360
Query: 600 IHHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALG 659
H A ++ ++L +++++GK+ + P+F+ S A F++ LG
Sbjct: 361 CHTAHIACKFSELLEKIDRRSGKSIESGPKFIKSGDAAIVKMVPSKPMCVEAFTDYPPLG 420
Query: 660 RVFLRSQGNTIAVGIVSRVRE 680
R +R T+AVG++ V +
Sbjct: 421 RFAVRDMRQTVAVGVIKSVEK 441
>Os04g0270100 Similar to G1 to S phase transition protein 1 homolog (GTP-binding
protein GST1- HS)
Length = 444
Score = 236 bits (602), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/428 (35%), Positives = 222/428 (51%), Gaps = 18/428 (4%)
Query: 252 RQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESAD 311
R LN+ +GHVD+GKST G++L G++ + + S+ A+ MD + +
Sbjct: 19 RHLNVVFIGHVDAGKSTAGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMDTNEE 78
Query: 312 ERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEA 371
ER +G T+ VG A+F+T+ +LD+PGHK +VPNMISGA+Q+D +LVI A G FE
Sbjct: 79 ERLKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFET 138
Query: 372 GMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMD--SVEYSKERFNFIKSQLGAFLRSCGY 429
G GQT+EH L ++ GV LIVV+NKMD +V++SKER++ I+S++ FLRS GY
Sbjct: 139 GYEKG--GQTREHVLLAKTLGVAKLIVVINKMDEPTVKWSKERYDEIESKMVPFLRSSGY 196
Query: 430 K-DSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPLRLPIC 488
V ++PIS + N M T D + SW+DG CL + +D + P RD P+R+PI
Sbjct: 197 NVKKDVHFLPISGLLGSN-MKTRMDKSICSWWDGPCLFEVLDCIEVPLRDPKGPVRMPII 255
Query: 489 DVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAGDNVAI 548
D + +G V + GK+E G R G +LVMP V I + A +NV +
Sbjct: 256 DKYKD--MGTVVM-GKIESGTIREGDSLLVMPNKTNVKVIGISLDEHKVRRAGPAENVRV 312
Query: 549 GLQGIDPSHIMPGGVICHPDYPVSVASCL--ELKILVLDITVPILVGLQFELHIHHAKVS 606
L GI+ IM G V+ PV + +L+IL L G + LHIH
Sbjct: 313 KLSGIEDEDIMAGFVLSSIGNPVGAVTEFNAQLQILELLDNAIFTAGYKAVLHIHSVVEE 372
Query: 607 ASMVKILSLLEQKTGKASKKIPR-------FLTSRQTAXXXXXXXXXXXXXXFSNLKALG 659
+V ++ ++ K K + + F+ + FS+ LG
Sbjct: 373 CEIVDLIEEIDMKKKKEADPKKKKPKRKPLFVKNGAVVVCRIQVNNLICIENFSDFPQLG 432
Query: 660 RVFLRSQG 667
R LR++G
Sbjct: 433 RFTLRTEG 440
>AK069160
Length = 300
Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 115/290 (39%), Positives = 174/290 (60%), Gaps = 14/290 (4%)
Query: 253 QLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESADE 312
+N+ ++GHVDSGKST G L++ G I K+ + SF YAW +D+ E
Sbjct: 7 HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAE 66
Query: 313 RERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEAG 372
RERGIT+ + + F+T Y+V ++D+PGH+DF+ NMI+G +Q+D A+L++ A G FEAG
Sbjct: 67 RERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAG 126
Query: 373 MGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVE--YSKERFNFIKSQLGAFLRSCGYK 430
+ N GQT+EH+ L + GV LIV VNKMDS E +S+ RF IK ++ ++++ GY
Sbjct: 127 ISKN--GQTREHALLAFTLGVKQLIVGVNKMDSTEPPFSEARFEEIKKEVSSYIKKIGYN 184
Query: 431 DSAVAWVPISAMENENLMTTASDT-RLSSW--------YDGNCLLKAIDTLPPPSRDVSK 481
+AVA+VPIS +N++ + W +G CL++A+D + PPSR K
Sbjct: 185 PAAVAFVPISGWHGDNMLEPSDKMPWFKGWNVERKEGKAEGKCLIEALDAILPPSRPTDK 244
Query: 482 PLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIE 531
PLRLP+ DV+ +G V + G+VE G + G+ + P VK++E
Sbjct: 245 PLRLPLQDVYKIGGIGTVPV-GRVETGVLKPGTVVTFAPANITTEVKSVE 293
>AK110320
Length = 677
Score = 228 bits (582), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 145/438 (33%), Positives = 219/438 (50%), Gaps = 18/438 (4%)
Query: 251 PR-QLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDES 309
PR N+ GHVD+GKST+ G LL A G + +++M + A+ D S
Sbjct: 235 PRPHYNVVFCGHVDAGKSTINGDLLIAHGAVDEREMQKLKREAEMNHREGWEKAYVFDLS 294
Query: 310 ADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSF 369
+ER +G T G YF+T N V +LD+PGHK FVP+MI GATQ+D +++VI A G F
Sbjct: 295 EEERAKGKTHETGAGYFETANRRVTVLDAPGHKAFVPSMIGGATQADLSVMVISARRGEF 354
Query: 370 EAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQLGAFLRSCGY 429
EAG NG GQT+EH+ L+R+ GV +I ++NKMD E+S+ER++ I +L F + G+
Sbjct: 355 EAGFE-NG-GQTREHTTLLRTCGVKYMICIINKMDDCEWSQERYDEIVGKLSPFFKQNGF 412
Query: 430 KDSAVAWVPISAMENENLMTTASDTRLSS----WYDGNCLLKAIDTLP-PPSRDVSKPLR 484
+ ++ M L+ + S WY G C+L I+ L P +R L
Sbjct: 413 VEKK----NLTFMPGAGLLGLGIAKPIPSGACPWYKGPCMLDFINQLTLPETRSDKDVLC 468
Query: 485 LPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAGD 544
+P+ G+V GK+E G+ G +I V+P V I ++ A GD
Sbjct: 469 IPVVGCVKDD--GKVHACGKIESGSVAVGDEITVLPSKRTFTVDAILVENTEIEKAYVGD 526
Query: 545 NVAIGLQGIDPSHIMPGGVICHP----DYPVSVASCLELKILVLDITVPILVGLQFELHI 600
NV I ++G+D S PG V+ P D + + I++L++ I G++ LH
Sbjct: 527 NVHIRVKGLDESDFHPGFVMTQPGEVGDEKMRTCEFFQAVIMILEVENIISNGIKVMLHA 586
Query: 601 HHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALGR 660
H A+ K+L+ + KT K KK P F + + + +GR
Sbjct: 587 HAAQEEVVFDKMLAQCDPKTLKPIKKDPAFAKAGECVIARLELSQALTLAPQAEFDKMGR 646
Query: 661 VFLRSQGNTIAVGIVSRV 678
LR +G TIA+G V ++
Sbjct: 647 FMLRDKGRTIAIGRVLKL 664
>Os02g0456200 Similar to G1 to S phase transition protein 1 homolog
Length = 371
Score = 187 bits (475), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 119/321 (37%), Positives = 173/321 (53%), Gaps = 11/321 (3%)
Query: 307 DESADERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASI 366
D S +G T+ VG A+F+T+ +LD+PGHK +VPNMISGA+Q+D +LVI A
Sbjct: 7 DLSIKMEPKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARK 66
Query: 367 GSFEAGMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMD--SVEYSKERFNFIKSQLGAFL 424
G FE G GQT+EH L ++ GV L+VV+NKMD +V +SKER++ I+ ++ FL
Sbjct: 67 GEFETGYERG--GQTREHVLLAKTLGVSKLVVVINKMDESTVGWSKERYDEIEGKMVPFL 124
Query: 425 RSCGYK-DSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKPL 483
+S GY V ++PIS + N M T D SW+ G CL + +D + P RD P+
Sbjct: 125 KSSGYNVKKDVHFLPISGLLGTN-MKTRMDKSNCSWWSGPCLFEVLDCIQVPLRDPKGPV 183
Query: 484 RLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAG 543
R+PI D + +G V + GK+E G G +LVMP V ++ + A G
Sbjct: 184 RMPIIDKYKD--MGTVVM-GKIESGTISEGDNMLVMPNKANVKVISVHCDEDRVRSAAPG 240
Query: 544 DNVAIGLQGIDPSHIMPGGVICHPDYPVSVASCL--ELKILVLDITVPILVGLQFELHIH 601
+NV + L GI+ I G V+ PVS S +L+IL L G + LHIH
Sbjct: 241 ENVRVKLSGIEEDDITAGFVLSSIKNPVSAISEFRAQLQILELLDNAIFTAGYKAVLHIH 300
Query: 602 HAKVSASMVKILSLLEQKTGK 622
+V+++ ++ K K
Sbjct: 301 SVVEECEIVELIEEIDLKRRK 321
>AK110624
Length = 463
Score = 182 bits (462), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 130/460 (28%), Positives = 216/460 (46%), Gaps = 38/460 (8%)
Query: 252 RQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESAD 311
L++ I GHVDSGKST GRLL LG I ++++ SFA+A+ MD +
Sbjct: 6 EHLSIVICGHVDSGKSTTTGRLLFELGGIPERELEKLKEEAAALGKQSFAFAFYMDRQKE 65
Query: 312 ERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEA 371
ERERG+T+ F T +H ++D+PGH+DF+ NMISGA Q+D +L++ A G+F
Sbjct: 66 ERERGVTIACTTKEFFTDKWHYTIIDAPGHRDFIKNMISGAAQADVCLLMVPAD-GNFTT 124
Query: 372 GM------GINGIGQTKEHSQLVRSFGVDNLIVVVNKMDS--VEYSKERFNFIKSQLGAF 423
+ GQT++H++L+ GV LI VNKMDS Y +ER+ I+ ++
Sbjct: 125 AIQKGDHKAAEIQGQTRQHARLINLLGVKQLICGVNKMDSDVAGYKEERYVEIRDEMKHM 184
Query: 424 LRSCGYK----DSAVAWVPISAMENENLMTTASDTRLSSWYDG-------------NCLL 466
L G+K + +V +PIS +NL+ + + + W++G LL
Sbjct: 185 LTRVGWKADFVEKSVPIIPISGWMGDNLIKKSENMK---WWNGMDVTGLNKEKVHIETLL 241
Query: 467 KAI-DTLPPPSRDVSKPLRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELA 525
A+ D + P R P+R+PI + +G V + G+VE G + G +++ +P A
Sbjct: 242 NALNDMVIVPERKTDAPMRVPISGAYKIKGVGDV-LAGRVEQGVVKPGDEVIFLPTHTAA 300
Query: 526 -----VVKTIERNSSSCNLARAGDNVAIGLQGIDPSHIMPGG--VICHPDYPVSVASCLE 578
V T+E + + A GDNV + ++G+D ++ G +I D +
Sbjct: 301 NPCVGKVFTVEMHHKRVDKAGPGDNVGMNIKGLDKGNMPRTGDVMILKSDQTLKPCQNFT 360
Query: 579 LKILVLDITVPILVGLQFELHIHHAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAX 638
+I LDI + G + + + + +I + ++TG + P L + + A
Sbjct: 361 AQIQTLDIPGEVKKGYSPIGFVRCGRAACKITEIKWKVGKETGNKKLEEPHGLKANEMAE 420
Query: 639 XXXXXXXXXXXXXFSNLKALGRVFLRSQGNTIAVGIVSRV 678
F + + L R+ + +G V V
Sbjct: 421 VVFEPCQPLVVDSFKSCEGLSRIAFLDGNTAVMLGKVVAV 460
>AK110735
Length = 330
Score = 146 bits (369), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/315 (29%), Positives = 147/315 (46%), Gaps = 17/315 (5%)
Query: 379 GQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQLGAFLRSCGYKDSAVAWVP 438
GQT+E + L + GV LIV VNKMDSV++ K RF I + F++ GY V +VP
Sbjct: 3 GQTREPALLAYTLGVRQLIVAVNKMDSVKWDKNRFEEIIKETSNFVKKVGYNPKTVPFVP 62
Query: 439 ISAMENENLMTTASDTRLSSWYD------------GNCLLKAIDTLPPPSRDVSKPLRLP 486
IS +N++ +++ WY G LL+AID + PP R KPLRLP
Sbjct: 63 ISGWNGDNMIEASTN---CPWYKGWEKETKAGKSTGKTLLEAIDAIEPPQRPTDKPLRLP 119
Query: 487 ICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARAGDNV 546
+ DV+ +G V + G+VE G ++G + P G VK++E + GDNV
Sbjct: 120 LQDVYKIGGIGTVPV-GRVETGIIKAGMVVTFAPAGVTTEVKSVEMHHEQLVEGVPGDNV 178
Query: 547 AIGLQGIDPSHIMPGGVICH-PDYPVSVASCLELKILVLDITVPILVGLQFELHIHHAKV 605
++ + I G V + P +++VL+ I G L H A +
Sbjct: 179 GFNVKNVSVKEIRRGNVCGDSKNDPPKGCDSFTAQVIVLNHPGQISAGYSPVLDCHTAHI 238
Query: 606 SASMVKILSLLEQKTGKASKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALGRVFLRS 665
+ +L ++++TGK + P+F+ S + F++ LGR +R
Sbjct: 239 ACKFDTLLEKIDRRTGKKMEDNPKFVKSGDASIVKMVPSKPMCVEAFTDYPPLGRFAVRD 298
Query: 666 QGNTIAVGIVSRVRE 680
T+AVG++ V +
Sbjct: 299 MRQTVAVGVIKSVEK 313
>Os02g0595700 Chloroplast translational elongation factor Tu
Length = 467
Score = 128 bits (321), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 100/321 (31%), Positives = 148/321 (46%), Gaps = 32/321 (9%)
Query: 253 QLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESADE 312
+N+ +GHVD GK+TL L L + +D + +E
Sbjct: 70 HVNIGTIGHVDHGKTTLTAALTMVLASVGGSAPKKYDE---------------IDAAPEE 114
Query: 313 RERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEAG 372
R RGIT+ ++T+ H +D PGH D+V NMI+GA Q D AILV+ + G
Sbjct: 115 RARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMP-- 172
Query: 373 MGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQLGAFLRSCGYKDS 432
QTKEH L + GV ++V +NK D V+ +E ++ ++ L S Y
Sbjct: 173 -------QTKEHILLAKQVGVPKIVVFLNKKDQVD-DEELLQLVELEVRELLSSYEYDGD 224
Query: 433 AVAWVPISAMEN-ENLMTTASDTRL-SSWYDG-NCLLKAIDT-LPPPSRDVSKPLRLPIC 488
V V SA++ ENLM + R W DG L+ ++D +P P R P L +
Sbjct: 225 EVPIVAGSALKALENLMANPAIKRGDDEWVDGIFSLIDSVDNYIPVPQRQTDLPFLLAVE 284
Query: 489 DVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGEL--AVVKTIERNSSSCNLARAGDNV 546
DVFS G VA G++E G + G + ++ E V +E + + A AGDNV
Sbjct: 285 DVFSITGRGTVAT-GRIERGTVKVGDTVDIVGIRETRNCTVTGVEMFQKTMDDAMAGDNV 343
Query: 547 AIGLQGIDPSHIMPGGVICHP 567
+ L+G+ I G V+ P
Sbjct: 344 GLLLRGMQKDDIERGMVLAKP 364
>Os03g0851100 Similar to Translational elongation factor EF-TuM
Length = 453
Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 102/343 (29%), Positives = 155/343 (45%), Gaps = 49/343 (14%)
Query: 253 QLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAW-AMDESAD 311
+N+ +GHVD GK+TL + L K + A A+ +D++ +
Sbjct: 67 HVNVGTIGHVDHGKTTLTAAITKVLAEAGKAK----------------AVAFDEIDKAPE 110
Query: 312 ERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEA 371
E+ RGIT+ ++T H +D PGH D+V NMI+GA Q D ILV+ A G
Sbjct: 111 EKARGITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMP- 169
Query: 372 GMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVE--YSKERFNFIKSQLGAFLRSCGY 429
QTKEH L R GV +L+ +NK+D+V+ E +L +F + G
Sbjct: 170 --------QTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGD 221
Query: 430 KDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDT----LPPPSRDVSKPLRL 485
+ + +SA++ N N +LK +D +P P R + K +
Sbjct: 222 EIPIIRGSALSALQGTN-----------DEIGKNAILKLMDAVDEYIPDPVRQLDKSFLM 270
Query: 486 PICDVFSSHKLGQVAIGGKVEVGATRSGSKILVM---PFGEL-AVVKTIERNSSSCNLAR 541
PI DVFS G V + G+VE G ++G + ++ P G L V +E +
Sbjct: 271 PIEDVFSIQGRGTV-VTGRVEQGTIKTGEDVEILGLTPSGPLKTTVTGVEMFKKILDHGE 329
Query: 542 AGDNVAIGLQGIDPSHIMPGGVICHPDYPVSVASCLELKILVL 584
AGDNV + L+G+ + G V+C P V E +I VL
Sbjct: 330 AGDNVGLLLRGLKRGDVQRGQVVCKPGT-VKTYQKFEAEIYVL 371
>AK108374
Length = 276
Score = 119 bits (299), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 124/260 (47%), Gaps = 5/260 (1%)
Query: 423 FLRSCGYKDSAVAWVPISAMENENLMTTASDTRLSSWYDGNCLLKAIDTLPPPSRDVSKP 482
F++ GY + V +VPIS +N++ + W+ G L+ A+D +PPP R V KP
Sbjct: 6 FVKKIGYNPANVPFVPISGWNGDNMLEKSDKM---PWWKGPTLIDALDAMPPPVRPVEKP 62
Query: 483 LRLPICDVFSSHKLGQVAIGGKVEVGATRSGSKILVMPFGELAVVKTIERNSSSCNLARA 542
LR+P+ DV+ +G V + G+VE G + G + P VK++E + A
Sbjct: 63 LRIPLQDVYKIGGIGTVPV-GRVETGVLKPGMVVTFAPVNLTTEVKSVEMHHEQLQSAVP 121
Query: 543 GDNVAIGLQGIDPSHIMPGGVIC-HPDYPVSVASCLELKILVLDITVPILVGLQFELHIH 601
GDNV ++ + I G V + P ++++L+ I G + H
Sbjct: 122 GDNVGFNVKNVSIKDIRRGNVASDSTNDPAFECEFFNAQVIILNHPGQIHAGYSPVVDCH 181
Query: 602 HAKVSASMVKILSLLEQKTGKASKKIPRFLTSRQTAXXXXXXXXXXXXXXFSNLKALGRV 661
A ++ +I+S ++++TGK ++ P+F+ S + A F+N LGR
Sbjct: 182 TAHIACRWKEIVSKIDRRTGKVIEETPKFVKSGEAAMVNMYPQKPLCVETFANYAPLGRF 241
Query: 662 FLRSQGNTIAVGIVSRVREQ 681
+R T+AVG++ V ++
Sbjct: 242 AVRDMRQTVAVGVIKAVTKK 261
>Os01g0752700 Similar to GTP-binding protein
Length = 673
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 68/267 (25%), Positives = 117/267 (43%), Gaps = 32/267 (11%)
Query: 252 RQLNLAIVGHVDSGKSTLCGRLLHALGRISKKQMHXXXXXXXXXXXXSFAYAWAMDESAD 311
R N+A++ HVD GK+TL RLL G + AMD +
Sbjct: 63 RIRNVAVIAHVDHGKTTLMDRLLRQCG-------------------ADIPHERAMDSISL 103
Query: 312 ERERGITMTVGVAYFDTKNYHVVLLDSPGHKDFVPNMISGATQSDAAILVIDASIGSFEA 371
ERERGIT+ V K + ++D+PGH DF + + A+LV+DA G
Sbjct: 104 ERERGITIASKVTSVSWKENELNMVDTPGHADFGGEVERVVGMVEGAVLVVDAGEGP--- 160
Query: 372 GMGINGIGQTKEHSQLVRSFGVDNLIVVVNKMDSVEYSKERFNFIKSQLGAFLRSCGYKD 431
+ QTK +G+ I+++NK+D S+E N ++S + + G +
Sbjct: 161 ------LAQTKFVLSKALKYGL-RPILLLNKVDRPSVSEETCNEVESLVFDLFANLGATE 213
Query: 432 SAVAWVPISAMENENLMTTA-SDTRLSSWYDGNCLLKAI-DTLPPPSRDVSKPLRLPICD 489
+ + + A E + + + + + + LL +I +P P D+ P ++ +
Sbjct: 214 EQLDFPVLYASAKEGWASLEFTKSPPDNAKNMSALLDSILQHVPSPKADLEAPFQMLVSM 273
Query: 490 VFSSHKLGQVAIGGKVEVGATRSGSKI 516
+ LG++ + G+V G R G K+
Sbjct: 274 MERDFYLGRI-LTGRVRSGVVRVGDKV 299
Database: rap3
Posted date: Nov 19, 2010 6:03 PM
Number of letters in database: 17,035,801
Number of sequences in database: 52,214
Lambda K H
0.317 0.132 0.384
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 52214
Number of Hits to DB: 21,372,138
Number of extensions: 862291
Number of successful extensions: 2138
Number of sequences better than 1.0e-10: 16
Number of HSP's gapped: 2094
Number of HSP's successfully gapped: 16
Length of query: 682
Length of database: 17,035,801
Length adjustment: 108
Effective length of query: 574
Effective length of database: 11,396,689
Effective search space: 6541699486
Effective search space used: 6541699486
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 159 (65.9 bits)