Os03g0177400
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : EF-1 alpha.
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Os03g0177400 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : EF-1 alpha.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = radiation,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 48.31 | 0.327 | 15.2 | 1.52 | 0.752 | 0.336 | 0.489 | -0.552 | 0.39 | 19.6 | 20 | 1434 | -- | -- |
| 48.93 | 0.326 | 15.2 | 1.47 | 0.75 | 0.338 | 0.465 | -- | 0.377 | 19.7 | 17.85 | 1434 | -- | -- |
| 48.97 | 0.326 | 15.2 | 1.52 | 0.749 | 0.336 | -- | -0.58 | 0.393 | 19.6 | 20 | 1428 | -- | -- |
| 49.59 | 0.328 | 15.2 | 1.45 | 0.753 | 0.319 | -- | -- | 0.365 | 19.7 | 19.67 | 1431 | -- | -- |
| 76.83 | 0.41 | 15.2 | 1.38 | -- | 0.259 | -- | -0.0437 | 0.276 | -- | 8.585 | 1497 | -- | -- |
| 52.49 | 0.34 | 15.2 | 1.41 | 0.752 | -- | 0.485 | -- | 0.284 | 19.5 | -- | -- | -- | -- |
| 53.14 | 0.341 | 15.2 | 1.4 | 0.752 | -- | -- | -- | 0.284 | 19.6 | -- | -- | -- | -- |
| 76.68 | 0.41 | 15.2 | 1.38 | -- | 0.262 | -- | -- | 0.277 | -- | 8.16 | 1507 | -- | -- |
| 89.01 | 0.439 | 15.2 | -- | 0.75 | 0.806 | -- | -- | 0.133 | 19.6 | 101.9 | 47520 | -- | -- |
| 83.44 | 0.427 | 15.2 | 1.39 | -- | -- | -- | -- | 0.273 | -- | -- | -- | -- | -- |
| 104.83 | 0.479 | 15.2 | -- | 0.74 | -- | -- | -- | 0.128 | 19.7 | -- | -- | -- | -- |
| 119.22 | 0.509 | 15.2 | -- | -- | 0.788 | -- | -- | 0.123 | -- | 90.78 | 47520 | -- | -- |
| 134.37 | 0.541 | 15.2 | -- | -- | -- | -- | -- | 0.119 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 43.43 | atmosphere | 1005.0 | 90 | > th | dose dependent | rect. | 3 | 6 |
| 2 | 43.68 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 6 |
| 4 | 43.81 | atmosphere | 1005.0 | 10 | > th | dose dependent | rect. | 3 | 6 |
| 15 | 44.62 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 3 | 3 |
| 17 | 44.66 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 2 |
| 20 | 44.76 | atmosphere | 1005.0 | 270 | > th | dose dependent | rect. | 4 | 1 |
| 31 | 45.24 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 6 |
| 41 | 45.38 | radiation | 10.0 | 1440 | > th | dose independent | rect. | 11 | 2 |
| 44 | 45.43 | radiation | 20.0 | 1440 | < th | dose independent | rect. | 11 | 2 |
| 46 | 45.46 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 12 | 4 |
| 50 | 45.53 | temperature | 25.0 | 10 | > th | dose independent | rect. | 1 | 8 |
| 86 | 45.92 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 24 | 10 |
| 89 | 45.94 | wind | 3.0 | 4320 | > th | dose independent | rect. | 8 | 1 |
| 101 | 46.04 | radiation | 1.0 | 1440 | < th | dose independent | rect. | 11 | 1 |
| 107 | 46.07 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 15 |
| 113 | 46.08 | radiation | 10.0 | 1440 | < th | dose independent | rect. | 11 | 11 |
| 123 | 46.10 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 1 | 8 |
| 137 | 46.17 | wind | 3.0 | 4320 | < th | dose independent | rect. | 8 | 1 |
| 186 | 46.34 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 8 |
| 187 | 46.34 | humidity | 90.0 | 10 | < th | dose dependent | rect. | 3 | 6 |
| 203 | 46.41 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 20 |
| 204 | 46.43 | temperature | 10.0 | 43200 | > th | dose independent | rect. | 10 | 6 |
| 207 | 46.44 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 18 |
| 211 | 46.45 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 16 |
| 215 | 46.46 | radiation | 10.0 | 1440 | < th | dose dependent | rect. | 9 | 13 |
| 234 | 46.52 | wind | 5.0 | 4320 | < th | dose dependent | rect. | 8 | 1 |
| 241 | 46.54 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 18 |
| 252 | 46.56 | radiation | 20.0 | 1440 | < th | dose dependent | rect. | 11 | 14 |
| 293 | 46.62 | wind | 1.0 | 14400 | < th | dose independent | rect. | 24 | 2 |
| 332 | 46.71 | radiation | 10.0 | 1440 | < th | dose independent | sin | 17 | NA |
| 341 | 46.75 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 20 | 6 |
| 348 | 46.78 | wind | 1.0 | 4320 | > th | dose dependent | rect. | 8 | 1 |
| 352 | 46.80 | radiation | 10.0 | 30 | > th | dose independent | rect. | 6 | 3 |
| 374 | 46.82 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 9 | 1 |
| 398 | 46.85 | atmosphere | 1005.0 | 90 | > th | dose independent | rect. | 4 | 5 |
| 433 | 46.91 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 18 | 15 |
| 435 | 46.92 | wind | 1.0 | 4320 | > th | dose independent | rect. | 3 | 3 |
| 440 | 46.92 | radiation | 1.0 | 30 | > th | dose dependent | rect. | 5 | 4 |
| 462 | 46.95 | radiation | 10.0 | 1440 | < th | dose dependent | sin | 20 | NA |
| 467 | 46.96 | atmosphere | 1005.0 | 90 | < th | dose dependent | rect. | 3 | 6 |
| 472 | 46.98 | wind | 1.0 | 4320 | < th | dose independent | rect. | 3 | 3 |
| 493 | 46.99 | precipitation | 0.1 | 270 | > th | dose dependent | rect. | 2 | 2 |
| 499 | 47.00 | precipitation | 0.1 | 270 | > th | dose independent | rect. | 2 | 2 |
| 509 | 47.02 | wind | 1.0 | 14400 | > th | dose independent | rect. | 24 | 2 |
| 511 | 47.02 | humidity | 90.0 | 720 | > th | dose independent | rect. | 20 | 6 |
| 549 | 47.07 | temperature | 20.0 | 270 | > th | dose dependent | rect. | 8 | 4 |
| 584 | 47.13 | humidity | 90.0 | 720 | > th | dose dependent | rect. | 22 | 1 |
| 597 | 47.16 | temperature | 20.0 | 30 | > th | dose dependent | rect. | 4 | 5 |
| 600 | 47.17 | temperature | 25.0 | 270 | > th | dose independent | rect. | 9 | 2 |
| 616 | 47.20 | temperature | 10.0 | 270 | > th | dose dependent | rect. | 7 | 7 |
| 639 | 47.24 | atmosphere | 1000.0 | 270 | > th | dose independent | rect. | 19 | 8 |
| 642 | 47.25 | temperature | 15.0 | 90 | > th | dose dependent | rect. | 9 | 6 |
| 713 | 47.33 | humidity | 90.0 | 10 | < th | dose independent | rect. | 3 | 17 |
| 768 | 47.43 | atmosphere | 1005.0 | 10 | < th | dose dependent | rect. | 19 | 15 |
| 771 | 47.43 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 19 |
| 776 | 47.44 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 8 |
| 777 | 47.44 | humidity | 90.0 | 10 | < th | dose independent | rect. | 15 | 18 |
| 798 | 47.47 | wind | 5.0 | 270 | < th | dose independent | rect. | 3 | 4 |
| 803 | 47.48 | humidity | 50.0 | 270 | > th | dose dependent | rect. | 18 | 9 |
| 864 | 47.53 | temperature | 10.0 | 30 | > th | dose dependent | rect. | 9 | 8 |
| 869 | 47.54 | wind | 5.0 | 30 | < th | dose independent | rect. | 4 | 5 |
| 879 | 47.55 | atmosphere | 1000.0 | 30 | > th | dose independent | rect. | 20 | 10 |
| 888 | 47.56 | radiation | 10.0 | 1440 | > th | dose independent | sin | 20 | NA |
| 890 | 47.56 | temperature | 20.0 | 10 | > th | dose independent | rect. | 20 | 8 |