Os04g0677800
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II
Description : Zinc finger, RanBP2-type domain containing protein.
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Os04g0677800 |
blastp(Os)/ blastp(At)/ coex/// RAP/ RiceXPro/ SALAD/ ATTED-II |
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Description : Zinc finger, RanBP2-type domain containing protein.
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log2(Expression) ~ Norm(μ, σ2)
μ = α + β1D + β2C + β3E + β4D*C + β5D*E + γ1N8
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Dependence on each variable
Residual plot
Process of the parameter reduction
(fixed parameters. wheather = temperature,
response mode = < th, dose dependency = dose dependent, type of G = no)
| deviance | σ | α | β1 | β2 | β3 | β4 | β5 | γ1 | peak time of C | threshold | memory length | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 18.21 | 0.2 | 8.57 | -0.614 | 0.572 | -0.524 | 0.202 | -0.421 | 0.0228 | 5.32 | 26.19 | 9 | -- | -- |
| 18.47 | 0.202 | 8.57 | -0.677 | 0.566 | -0.494 | 0.102 | -- | 0.0093 | 5.36 | 26.19 | 9 | -- | -- |
| 18.26 | 0.201 | 8.57 | -0.62 | 0.571 | -0.518 | -- | -0.365 | 0.0207 | 5.31 | 26.19 | 9 | -- | -- |
| 18.49 | 0.202 | 8.57 | -0.678 | 0.569 | -0.495 | -- | -- | 0.00791 | 5.33 | 26.33 | 6 | -- | -- |
| 32.75 | 0.268 | 8.57 | -0.591 | -- | -0.411 | -- | -0.315 | 0.0753 | -- | 23.99 | 6 | -- | -- |
| 22.12 | 0.221 | 8.55 | -0.564 | 0.501 | -- | 0.141 | -- | 0.116 | 6.15 | -- | -- | -- | -- |
| 22.17 | 0.221 | 8.55 | -0.562 | 0.502 | -- | -- | -- | 0.116 | 6.12 | -- | -- | -- | -- |
| 32.91 | 0.268 | 8.57 | -0.631 | -- | -0.385 | -- | -- | 0.0676 | -- | 23.9 | 2 | -- | -- |
| 29.54 | 0.255 | 8.54 | -- | 0.52 | -0.242 | -- | -- | 0.132 | 5.78 | 26.14 | 5 | -- | -- |
| 35.23 | 0.277 | 8.56 | -0.548 | -- | -- | -- | -- | 0.127 | -- | -- | -- | -- | -- |
| 30.5 | 0.258 | 8.53 | -- | 0.494 | -- | -- | -- | 0.178 | 6.18 | -- | -- | -- | -- |
| 42.65 | 0.305 | 8.55 | -- | -- | -0.18 | -- | -- | 0.167 | -- | 23.4 | 8 | -- | -- |
| 43.16 | 0.307 | 8.54 | -- | -- | -- | -- | -- | 0.188 | -- | -- | -- | -- | -- |
Results of the grid search
Summarized heatmap of deviance
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Histogram 
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Local optima within top1000 grid-points
| rank | deviance | wheather | threshold | memory length | response mode | dose dependency | type of G | peak or start time of G | open length of G |
|---|---|---|---|---|---|---|---|---|---|
| 1 | 17.31 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 9 | 19 |
| 44 | 17.68 | humidity | 50.0 | 43200 | < th | dose independent | rect. | 16 | 1 |
| 57 | 17.75 | humidity | 50.0 | 43200 | > th | dose independent | rect. | 16 | 1 |
| 59 | 17.76 | humidity | 50.0 | 14400 | < th | dose dependent | rect. | 9 | 4 |
| 131 | 17.85 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 11 | 2 |
| 137 | 17.86 | humidity | 50.0 | 14400 | < th | dose dependent | sin | 7 | NA |
| 138 | 17.87 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 139 | 17.87 | wind | 7.0 | 14400 | < th | dose dependent | rect. | 22 | 1 |
| 150 | 17.90 | wind | 1.0 | 14400 | < th | dose independent | rect. | 6 | 2 |
| 159 | 17.93 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 22 | 4 |
| 169 | 17.96 | wind | 1.0 | 14400 | > th | dose independent | rect. | 6 | 2 |
| 171 | 17.96 | wind | 1.0 | 14400 | > th | dose dependent | rect. | 22 | 1 |
| 197 | 17.99 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 11 | 13 |
| 202 | 18.00 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 12 | 11 |
| 209 | 18.01 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 2 |
| 214 | 18.02 | atmosphere | 1015.0 | 4320 | < th | dose independent | rect. | 15 | 6 |
| 219 | 18.03 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 14 | 7 |
| 221 | 18.03 | atmosphere | 1015.0 | 4320 | > th | dose dependent | rect. | 13 | 9 |
| 237 | 18.06 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 9 |
| 248 | 18.07 | atmosphere | 1015.0 | 4320 | > th | dose dependent | sin | 19 | NA |
| 300 | 18.10 | humidity | 60.0 | 14400 | < th | dose independent | rect. | 8 | 1 |
| 321 | 18.10 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 6 | 22 |
| 336 | 18.12 | humidity | 50.0 | 14400 | < th | dose dependent | no | NA | NA |
| 482 | 18.15 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 11 | 3 |
| 485 | 18.15 | temperature | 25.0 | 30 | < th | dose dependent | sin | 17 | NA |
| 498 | 18.16 | humidity | 50.0 | 14400 | < th | dose independent | rect. | 8 | 5 |
| 537 | 18.16 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 6 | 6 |
| 559 | 18.17 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 13 | 1 |
| 593 | 18.18 | humidity | 60.0 | 14400 | < th | dose dependent | rect. | 8 | 1 |
| 638 | 18.21 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 18 | 21 |
| 641 | 18.21 | wind | 3.0 | 14400 | < th | dose dependent | rect. | 1 | 1 |
| 677 | 18.23 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 8 | 7 |
| 689 | 18.23 | humidity | 50.0 | 14400 | > th | dose independent | rect. | 22 | 17 |
| 731 | 18.26 | precipitation | 0.1 | 14400 | > th | dose independent | rect. | 7 | 1 |
| 748 | 18.26 | precipitation | 0.1 | 14400 | > th | dose dependent | rect. | 7 | 1 |
| 760 | 18.26 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 23 | 23 |
| 761 | 18.27 | atmosphere | 1015.0 | 4320 | > th | dose independent | sin | 19 | NA |
| 777 | 18.28 | atmosphere | 1015.0 | 4320 | < th | dose independent | sin | 19 | NA |
| 790 | 18.28 | wind | 1.0 | 14400 | < th | dose dependent | rect. | 20 | 16 |
| 800 | 18.29 | temperature | 25.0 | 10 | < th | dose dependent | no | NA | NA |
| 862 | 18.30 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 17 | 23 |
| 863 | 18.30 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 19 | 23 |
| 865 | 18.31 | precipitation | 0.1 | 14400 | < th | dose independent | rect. | 7 | 1 |
| 872 | 18.31 | precipitation | 0.1 | 14400 | < th | dose dependent | rect. | 7 | 1 |
| 886 | 18.31 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 15 | 23 |
| 887 | 18.32 | humidity | 50.0 | 14400 | < th | dose independent | sin | 7 | NA |
| 906 | 18.32 | temperature | 30.0 | 90 | < th | dose dependent | rect. | 15 | 13 |
| 944 | 18.34 | humidity | 50.0 | 14400 | > th | dose independent | sin | 7 | NA |
| 946 | 18.34 | wind | 1.0 | 14400 | > th | dose independent | rect. | 1 | 1 |
| 948 | 18.34 | atmosphere | 1015.0 | 4320 | > th | dose independent | rect. | 13 | 4 |
| 980 | 18.34 | temperature | 25.0 | 10 | < th | dose dependent | rect. | 13 | 23 |